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MusaeumScythia

Mongolia_LBA

MusaeumScythia
Dec 7th, 2024
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  1. oldmode set: terminating
  2. ##end of qpAdm: 33.681 seconds cpu 1628.684 Mbytes in use
  3. qpAdm: parameter file: BER002.qpAdm.par
  4. ### THE INPUT PARAMETERS
  5. ##PARAMETER NAME: VALUE
  6. genotypename: v54.1_1240K.geno
  7. snpname: v54.1_1240K.snp
  8. indivname: v54.1_1240K.ind
  9. popleft: BER002_leftlist.txt
  10. popright: rightlist
  11. details: YES
  12. ## qpAdm -p BER002.qpAdm.par
  13. ## qpAdm version: 2050
  14. seed: 16967006
  15. allsnps set NO. It is recommended that allsnps be set explicitly
  16. *** recommended that inbreed be explicitly set ***
  17. inbreed set NO
  18. read 1073741824 bytes
  19. read 2147483648 bytes
  20. read 3221225472 bytes
  21. read 3467232556 bytes
  22. packed geno read OK
  23. end of inpack
  24.  
  25. left pops:
  26. BER002 1
  27. Russia_MLBA_Sintashta 36
  28. Russia_Tyumen_HG 1
  29. Mongolia_North_N 5
  30. Iran_C_TepeHissar 13
  31.  
  32. right pops:
  33. Cameroon_SMA.SG 2
  34. Turkey_N.SG 3
  35. Italy_Mesolithic.SG 3
  36. CHG 2
  37. Iran_TepeAbdulHosein_N.SG 3
  38. Russia_Arkhangelsk_Veretye_Mesolithic.SG 1
  39. Russia_DevilsCave_N.SG 4
  40. South_Africa_400BP.SG 4
  41. Nepal_Mebrak_2125BP.SG 2
  42. Russia_Sunghir_UP.SG 4
  43. Russia_Kostenki14.SG 1
  44. Kazakhstan_Botai_Eneolithic.SG 3
  45. Switzerland_Bichon.SG 1
  46. Spain_HG.SG 3
  47.  
  48. jackknife block size: 0.050
  49. snps: 1150466 indivs: 92
  50. number of blocks for block jackknife: 714
  51. ## ncols: 1150466
  52. coverage: BER002 591497
  53. coverage: Russia_MLBA_Sintashta 1128313
  54. coverage: Russia_Tyumen_HG 805560
  55. coverage: Mongolia_North_N 1057835
  56. coverage: Iran_C_TepeHissar 987000
  57. coverage: Cameroon_SMA.SG 1148928
  58. coverage: Turkey_N.SG 1150163
  59. coverage: Italy_Mesolithic.SG 1141404
  60. coverage: CHG 1147700
  61. coverage: Iran_TepeAbdulHosein_N.SG 1061042
  62. coverage: Russia_Arkhangelsk_Veretye_Mesolithic.SG 1088577
  63. coverage: Russia_DevilsCave_N.SG 1148318
  64. coverage: South_Africa_400BP.SG 1150181
  65. coverage: Nepal_Mebrak_2125BP.SG 594658
  66. coverage: Russia_Sunghir_UP.SG 1150000
  67. coverage: Russia_Kostenki14.SG 1048972
  68. coverage: Kazakhstan_Botai_Eneolithic.SG 1149621
  69. coverage: Switzerland_Bichon.SG 1140092
  70. coverage: Spain_HG.SG 1101680
  71. Effective number of blocks: 630.826
  72. numsnps used: 317947
  73. codimension 1
  74. f4info:
  75. f4rank: 3 dof: 10 chisq: 12.848 tail: 0.23229804 dofdiff: 12 chisqdiff: -12.848 taildiff: 1
  76. B:
  77. scale 1.000 1.000 1.000
  78. Turkey_N.SG 0.890 -0.318 1.085
  79. Italy_Mesolithic.SG 0.995 0.787 1.550
  80. CHG 0.867 -0.501 -0.110
  81. Iran_TepeAbdulHosein_N.SG 0.687 -0.886 -0.996
  82. Russia_Arkhangelsk_Veretye_Mesolithic.SG 1.025 1.660 -0.764
  83. Russia_DevilsCave_N.SG -2.014 1.211 0.978
  84. South_Africa_400BP.SG -0.007 -0.040 0.052
  85. Nepal_Mebrak_2125BP.SG -1.661 1.093 0.451
  86. Russia_Sunghir_UP.SG 0.391 0.519 0.199
  87. Russia_Kostenki14.SG 0.421 0.450 -0.141
  88. Kazakhstan_Botai_Eneolithic.SG 0.536 2.069 -1.876
  89. Switzerland_Bichon.SG 0.920 0.714 1.415
  90. Spain_HG.SG 0.814 0.748 1.044
  91. A:
  92. scale 378.429 539.151 939.688
  93. Russia_MLBA_Sintashta 0.988 -0.185 0.435
  94. Russia_Tyumen_HG 0.650 1.164 -1.652
  95. Mongolia_North_N -1.570 -0.038 -0.367
  96. Iran_C_TepeHissar 0.369 -1.615 -0.973
  97.  
  98.  
  99. full rank
  100. f4info:
  101. f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 12.848 taildiff: 0.23229804
  102. B:
  103. scale 376.378 301.095 239.053 294.931
  104. Turkey_N.SG 1.082 -0.331 -1.013 0.173
  105. Italy_Mesolithic.SG 1.221 0.268 -1.099 -0.840
  106. CHG 0.883 0.186 -0.850 0.695
  107. Iran_TepeAbdulHosein_N.SG 0.624 0.305 -0.573 1.276
  108. Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.806 2.153 -0.888 -0.846
  109. Russia_DevilsCave_N.SG -2.004 -0.814 1.856 -1.992
  110. South_Africa_400BP.SG -0.121 -0.171 -0.094 -0.092
  111. Nepal_Mebrak_2125BP.SG -1.600 -0.310 1.649 -1.543
  112. Russia_Sunghir_UP.SG 0.283 0.374 -0.475 -0.477
  113. Russia_Kostenki14.SG 0.319 0.578 -0.428 -0.264
  114. Kazakhstan_Botai_Eneolithic.SG -0.122 2.586 -0.452 -1.164
  115. Switzerland_Bichon.SG 1.091 0.217 -1.048 -0.807
  116. Spain_HG.SG 0.735 0.243 -1.021 -0.881
  117. A:
  118. scale 2.000 2.000 2.000 2.000
  119. Russia_MLBA_Sintashta 2.000 0.000 0.000 0.000
  120. Russia_Tyumen_HG 0.000 2.000 0.000 0.000
  121. Mongolia_North_N 0.000 0.000 2.000 0.000
  122. Iran_C_TepeHissar 0.000 0.000 0.000 2.000
  123.  
  124.  
  125. best coefficients: 0.563 0.075 0.381 -0.019
  126. Jackknife mean: 0.563113472 0.075011066 0.381118281 -0.019242819
  127. std. errors: 0.046 0.025 0.019 0.037
  128.  
  129. error covariance (* 1,000,000)
  130. 2098 -675 -10 -1414
  131. -675 601 -147 221
  132. -10 -147 347 -189
  133. -1414 221 -189 1382
  134.  
  135.  
  136. summ: BER002 4 0.232298 0.563 0.075 0.381 -0.019 2098 -675 -10 -1414 601 ...
  137. -147 221 347 -189 1382
  138.  
  139. fixed pat wt dof chisq tail prob
  140. 0000 0 10 12.848 0.232298 0.563 0.075 0.381 -0.019 infeasible
  141. 0001 1 11 15.738 0.151128 0.539 0.085 0.376 0.000
  142. 0010 1 11 400.977 0 0.584 0.256 0.000 0.160
  143. 0100 1 11 21.954 0.0247316 0.646 0.000 0.400 -0.046 infeasible
  144. 1000 1 11 145.213 1.41365e-25 0.000 0.274 0.389 0.336
  145. 0011 2 12 416.559 0 0.771 0.229 0.000 0.000
  146. 0101 2 12 24.189 0.0191724 0.604 0.000 0.396 0.000
  147. 0110 2 12 478.288 0 0.909 0.000 0.000 0.091
  148. 1001 2 12 357.423 0 0.000 0.504 0.496 0.000
  149. 1010 2 12 490.269 0 0.000 0.515 0.000 0.485
  150. 1100 2 12 299.857 0 0.000 0.000 0.494 0.506
  151. 0111 3 13 483.028 0 1.000 0.000 0.000 0.000
  152. 1011 3 13 745.280 0 0.000 1.000 0.000 0.000
  153. 1101 3 13 939.889 0 0.000 0.000 1.000 0.000
  154. 1110 3 13 935.669 0 0.000 0.000 0.000 1.000
  155. best pat: 0000 0.232298 - -
  156. best pat: 0001 0.151128 chi(nested): 2.890 p-value for nested model: 0.0891123
  157. best pat: 0101 0.0191724 chi(nested): 8.450 p-value for nested model: 0.0036499
  158. best pat: 0111 5.87034e-95 chi(nested): 458.840 p-value for nested model: 8.61633e-102
  159.  
  160. coeffs: 0.563 0.075 0.381 -0.019
  161.  
  162. ## dscore:: f_4(Base, Fit, Rbase, right2)
  163. ## genstat:: f_4(Base, Fit, right1, right2)
  164.  
  165. details: Russia_MLBA_Sintashta Turkey_N.SG 0.002875 8.819618
  166. details: Russia_Tyumen_HG Turkey_N.SG -0.001099 -2.383607
  167. details: Mongolia_North_N Turkey_N.SG -0.004238 -12.063265
  168. details: Iran_C_TepeHissar Turkey_N.SG 0.000587 1.676942
  169. dscore: Turkey_N.SG f4: -0.000090 Z: -0.289227
  170.  
  171. details: Russia_MLBA_Sintashta Italy_Mesolithic.SG 0.003245 8.289409
  172. details: Russia_Tyumen_HG Italy_Mesolithic.SG 0.000890 1.718658
  173. details: Mongolia_North_N Italy_Mesolithic.SG -0.004597 -10.477382
  174. details: Iran_C_TepeHissar Italy_Mesolithic.SG -0.002848 -6.964308
  175. dscore: Italy_Mesolithic.SG f4: 0.000198 Z: 0.518220
  176.  
  177. details: Russia_MLBA_Sintashta CHG 0.002347 6.374905
  178. details: Russia_Tyumen_HG CHG 0.000618 1.207121
  179. details: Mongolia_North_N CHG -0.003558 -8.762811
  180. details: Iran_C_TepeHissar CHG 0.002356 5.800906
  181. dscore: CHG f4: -0.000033 Z: -0.094367
  182.  
  183. details: Russia_MLBA_Sintashta Iran_TepeAbdulHosein_N.SG 0.001658 4.778705
  184. details: Russia_Tyumen_HG Iran_TepeAbdulHosein_N.SG 0.001014 2.099547
  185. details: Mongolia_North_N Iran_TepeAbdulHosein_N.SG -0.002396 -6.365128
  186. details: Iran_C_TepeHissar Iran_TepeAbdulHosein_N.SG 0.004326 11.535696
  187. dscore: Iran_TepeAbdulHosein_N.SG f4: 0.000013 Z: 0.037494
  188.  
  189. details: Russia_MLBA_Sintashta Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.002140 5.093264
  190. details: Russia_Tyumen_HG Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.007152 11.786947
  191. details: Mongolia_North_N Russia_Arkhangelsk_Veretye_Mesolithic.SG -0.003713 -7.897240
  192. details: Iran_C_TepeHissar Russia_Arkhangelsk_Veretye_Mesolithic.SG -0.002870 -6.181511
  193. dscore: Russia_Arkhangelsk_Veretye_Mesolithic.SG f4: 0.000382 Z: 0.940368
  194.  
  195. details: Russia_MLBA_Sintashta Russia_DevilsCave_N.SG -0.005324 -13.448531
  196. details: Russia_Tyumen_HG Russia_DevilsCave_N.SG -0.002705 -5.145487
  197. details: Mongolia_North_N Russia_DevilsCave_N.SG 0.007764 17.904875
  198. details: Iran_C_TepeHissar Russia_DevilsCave_N.SG -0.006755 -15.811898
  199. dscore: Russia_DevilsCave_N.SG f4: -0.000111 Z: -0.290948
  200.  
  201. details: Russia_MLBA_Sintashta South_Africa_400BP.SG -0.000321 -1.355434
  202. details: Russia_Tyumen_HG South_Africa_400BP.SG -0.000567 -1.734235
  203. details: Mongolia_North_N South_Africa_400BP.SG -0.000392 -1.502092
  204. details: Iran_C_TepeHissar South_Africa_400BP.SG -0.000312 -1.215843
  205. dscore: South_Africa_400BP.SG f4: -0.000367 Z: -1.582184
  206.  
  207. details: Russia_MLBA_Sintashta Nepal_Mebrak_2125BP.SG -0.004251 -9.832383
  208. details: Russia_Tyumen_HG Nepal_Mebrak_2125BP.SG -0.001028 -1.786615
  209. details: Mongolia_North_N Nepal_Mebrak_2125BP.SG 0.006900 14.544342
  210. details: Iran_C_TepeHissar Nepal_Mebrak_2125BP.SG -0.005231 -11.491357
  211. dscore: Nepal_Mebrak_2125BP.SG f4: 0.000260 Z: 0.624180
  212.  
  213. details: Russia_MLBA_Sintashta Russia_Sunghir_UP.SG 0.000753 2.246698
  214. details: Russia_Tyumen_HG Russia_Sunghir_UP.SG 0.001242 2.624748
  215. details: Mongolia_North_N Russia_Sunghir_UP.SG -0.001985 -5.356026
  216. details: Iran_C_TepeHissar Russia_Sunghir_UP.SG -0.001618 -4.342311
  217. dscore: Russia_Sunghir_UP.SG f4: -0.000208 Z: -0.648686
  218.  
  219. details: Russia_MLBA_Sintashta Russia_Kostenki14.SG 0.000848 2.108851
  220. details: Russia_Tyumen_HG Russia_Kostenki14.SG 0.001919 3.352214
  221. details: Mongolia_North_N Russia_Kostenki14.SG -0.001789 -3.886834
  222. details: Iran_C_TepeHissar Russia_Kostenki14.SG -0.000895 -2.023643
  223. dscore: Russia_Kostenki14.SG f4: -0.000043 Z: -0.108388
  224.  
  225. details: Russia_MLBA_Sintashta Kazakhstan_Botai_Eneolithic.SG -0.000324 -0.907538
  226. details: Russia_Tyumen_HG Kazakhstan_Botai_Eneolithic.SG 0.008587 17.516501
  227. details: Mongolia_North_N Kazakhstan_Botai_Eneolithic.SG -0.001892 -4.754847
  228. details: Iran_C_TepeHissar Kazakhstan_Botai_Eneolithic.SG -0.003948 -10.085888
  229. dscore: Kazakhstan_Botai_Eneolithic.SG f4: -0.000183 Z: -0.529249
  230.  
  231. details: Russia_MLBA_Sintashta Switzerland_Bichon.SG 0.002899 6.375668
  232. details: Russia_Tyumen_HG Switzerland_Bichon.SG 0.000720 1.171225
  233. details: Mongolia_North_N Switzerland_Bichon.SG -0.004384 -8.805122
  234. details: Iran_C_TepeHissar Switzerland_Bichon.SG -0.002735 -5.695063
  235. dscore: Switzerland_Bichon.SG f4: 0.000069 Z: 0.156220
  236.  
  237. details: Russia_MLBA_Sintashta Spain_HG.SG 0.001954 5.649927
  238. details: Russia_Tyumen_HG Spain_HG.SG 0.000807 1.709671
  239. details: Mongolia_North_N Spain_HG.SG -0.004271 -11.153607
  240. details: Iran_C_TepeHissar Spain_HG.SG -0.002986 -8.033721
  241. dscore: Spain_HG.SG f4: -0.000409 Z: -1.233757
  242.  
  243. gendstat: Cameroon_SMA.SG Turkey_N.SG -0.289
  244. gendstat: Cameroon_SMA.SG Italy_Mesolithic.SG 0.518
  245. gendstat: Cameroon_SMA.SG CHG -0.094
  246. gendstat: Cameroon_SMA.SG Iran_TepeAbdulHosein_N.SG 0.037
  247. gendstat: Cameroon_SMA.SG Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.940
  248. gendstat: Cameroon_SMA.SG Russia_DevilsCave_N.SG -0.291
  249. gendstat: Cameroon_SMA.SG South_Africa_400BP.SG -1.582
  250. gendstat: Cameroon_SMA.SG Nepal_Mebrak_2125BP.SG 0.624
  251. gendstat: Cameroon_SMA.SG Russia_Sunghir_UP.SG -0.649
  252. gendstat: Cameroon_SMA.SG Russia_Kostenki14.SG -0.108
  253. gendstat: Cameroon_SMA.SG Kazakhstan_Botai_Eneolithic.SG -0.529
  254. gendstat: Cameroon_SMA.SG Switzerland_Bichon.SG 0.156
  255. gendstat: Cameroon_SMA.SG Spain_HG.SG -1.234
  256. gendstat: Turkey_N.SG Italy_Mesolithic.SG 0.842
  257. gendstat: Turkey_N.SG CHG 0.178
  258. gendstat: Turkey_N.SG Iran_TepeAbdulHosein_N.SG 0.337
  259. gendstat: Turkey_N.SG Russia_Arkhangelsk_Veretye_Mesolithic.SG 1.242
  260. gendstat: Turkey_N.SG Russia_DevilsCave_N.SG -0.052
  261. gendstat: Turkey_N.SG South_Africa_400BP.SG -0.905
  262. gendstat: Turkey_N.SG Nepal_Mebrak_2125BP.SG 0.784
  263. gendstat: Turkey_N.SG Russia_Sunghir_UP.SG -0.398
  264. gendstat: Turkey_N.SG Russia_Kostenki14.SG 0.124
  265. gendstat: Turkey_N.SG Kazakhstan_Botai_Eneolithic.SG -0.282
  266. gendstat: Turkey_N.SG Switzerland_Bichon.SG 0.405
  267. gendstat: Turkey_N.SG Spain_HG.SG -1.063
  268. gendstat: Italy_Mesolithic.SG CHG -0.611
  269. gendstat: Italy_Mesolithic.SG Iran_TepeAbdulHosein_N.SG -0.473
  270. gendstat: Italy_Mesolithic.SG Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.460
  271. gendstat: Italy_Mesolithic.SG Russia_DevilsCave_N.SG -0.683
  272. gendstat: Italy_Mesolithic.SG South_Africa_400BP.SG -1.541
  273. gendstat: Italy_Mesolithic.SG Nepal_Mebrak_2125BP.SG 0.131
  274. gendstat: Italy_Mesolithic.SG Russia_Sunghir_UP.SG -1.202
  275. gendstat: Italy_Mesolithic.SG Russia_Kostenki14.SG -0.584
  276. gendstat: Italy_Mesolithic.SG Kazakhstan_Botai_Eneolithic.SG -1.052
  277. gendstat: Italy_Mesolithic.SG Switzerland_Bichon.SG -0.388
  278. gendstat: Italy_Mesolithic.SG Spain_HG.SG -2.106
  279. gendstat: CHG Iran_TepeAbdulHosein_N.SG 0.138
  280. gendstat: CHG Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.998
  281. gendstat: CHG Russia_DevilsCave_N.SG -0.179
  282. gendstat: CHG South_Africa_400BP.SG -0.961
  283. gendstat: CHG Nepal_Mebrak_2125BP.SG 0.622
  284. gendstat: CHG Russia_Sunghir_UP.SG -0.506
  285. gendstat: CHG Russia_Kostenki14.SG -0.022
  286. gendstat: CHG Kazakhstan_Botai_Eneolithic.SG -0.415
  287. gendstat: CHG Switzerland_Bichon.SG 0.237
  288. gendstat: CHG Spain_HG.SG -1.104
  289. gendstat: Iran_TepeAbdulHosein_N.SG Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.904
  290. gendstat: Iran_TepeAbdulHosein_N.SG Russia_DevilsCave_N.SG -0.301
  291. gendstat: Iran_TepeAbdulHosein_N.SG South_Africa_400BP.SG -1.155
  292. gendstat: Iran_TepeAbdulHosein_N.SG Nepal_Mebrak_2125BP.SG 0.562
  293. gendstat: Iran_TepeAbdulHosein_N.SG Russia_Sunghir_UP.SG -0.675
  294. gendstat: Iran_TepeAbdulHosein_N.SG Russia_Kostenki14.SG -0.135
  295. gendstat: Iran_TepeAbdulHosein_N.SG Kazakhstan_Botai_Eneolithic.SG -0.588
  296. gendstat: Iran_TepeAbdulHosein_N.SG Switzerland_Bichon.SG 0.131
  297. gendstat: Iran_TepeAbdulHosein_N.SG Spain_HG.SG -1.207
  298. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Russia_DevilsCave_N.SG -1.056
  299. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG South_Africa_400BP.SG -1.804
  300. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Nepal_Mebrak_2125BP.SG -0.253
  301. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Russia_Sunghir_UP.SG -1.561
  302. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Russia_Kostenki14.SG -0.938
  303. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Kazakhstan_Botai_Eneolithic.SG -1.521
  304. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Switzerland_Bichon.SG -0.694
  305. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Spain_HG.SG -2.117
  306. gendstat: Russia_DevilsCave_N.SG South_Africa_400BP.SG -0.690
  307. gendstat: Russia_DevilsCave_N.SG Nepal_Mebrak_2125BP.SG 0.981
  308. gendstat: Russia_DevilsCave_N.SG Russia_Sunghir_UP.SG -0.261
  309. gendstat: Russia_DevilsCave_N.SG Russia_Kostenki14.SG 0.159
  310. gendstat: Russia_DevilsCave_N.SG Kazakhstan_Botai_Eneolithic.SG -0.194
  311. gendstat: Russia_DevilsCave_N.SG Switzerland_Bichon.SG 0.360
  312. gendstat: Russia_DevilsCave_N.SG Spain_HG.SG -0.696
  313. gendstat: South_Africa_400BP.SG Nepal_Mebrak_2125BP.SG 1.534
  314. gendstat: South_Africa_400BP.SG Russia_Sunghir_UP.SG 0.516
  315. gendstat: South_Africa_400BP.SG Russia_Kostenki14.SG 0.842
  316. gendstat: South_Africa_400BP.SG Kazakhstan_Botai_Eneolithic.SG 0.559
  317. gendstat: South_Africa_400BP.SG Switzerland_Bichon.SG 1.027
  318. gendstat: South_Africa_400BP.SG Spain_HG.SG -0.128
  319. gendstat: Nepal_Mebrak_2125BP.SG Russia_Sunghir_UP.SG -1.120
  320. gendstat: Nepal_Mebrak_2125BP.SG Russia_Kostenki14.SG -0.636
  321. gendstat: Nepal_Mebrak_2125BP.SG Kazakhstan_Botai_Eneolithic.SG -1.072
  322. gendstat: Nepal_Mebrak_2125BP.SG Switzerland_Bichon.SG -0.365
  323. gendstat: Nepal_Mebrak_2125BP.SG Spain_HG.SG -1.489
  324. gendstat: Russia_Sunghir_UP.SG Russia_Kostenki14.SG 0.471
  325. gendstat: Russia_Sunghir_UP.SG Kazakhstan_Botai_Eneolithic.SG 0.082
  326. gendstat: Russia_Sunghir_UP.SG Switzerland_Bichon.SG 0.696
  327. gendstat: Russia_Sunghir_UP.SG Spain_HG.SG -0.658
  328. gendstat: Russia_Kostenki14.SG Kazakhstan_Botai_Eneolithic.SG -0.352
  329. gendstat: Russia_Kostenki14.SG Switzerland_Bichon.SG 0.237
  330. gendstat: Russia_Kostenki14.SG Spain_HG.SG -0.980
  331. gendstat: Kazakhstan_Botai_Eneolithic.SG Switzerland_Bichon.SG 0.602
  332. gendstat: Kazakhstan_Botai_Eneolithic.SG Spain_HG.SG -0.684
  333. gendstat: Switzerland_Bichon.SG Spain_HG.SG -1.364
  334.  
  335. worst Z-score with right hand mix
  336. f4(Target, Fit, Base, mix of Right pops; Z: -3.495 sum: 1.000
  337. Turkey_N.SG 0.030
  338. Italy_Mesolithic.SG -1.042
  339. CHG -0.172
  340. Iran_TepeAbdulHosein_N.SG -0.334
  341. Russia_Arkhangelsk_Veretye_Mesolithic.SG -0.763
  342. Russia_DevilsCave_N.SG 0.181
  343. South_Africa_400BP.SG 1.402
  344. Nepal_Mebrak_2125BP.SG -0.553
  345. Russia_Sunghir_UP.SG 0.496
  346. Russia_Kostenki14.SG -0.227
  347. Kazakhstan_Botai_Eneolithic.SG 0.469
  348. Switzerland_Bichon.SG -0.218
  349. Spain_HG.SG 1.728
  350.  
  351. oldmode set: terminating
  352. ##end of qpAdm: 33.318 seconds cpu 1628.684 Mbytes in use
  353. qpAdm: parameter file: SBG001.qpAdm.par
  354. ### THE INPUT PARAMETERS
  355. ##PARAMETER NAME: VALUE
  356. genotypename: v54.1_1240K.geno
  357. snpname: v54.1_1240K.snp
  358. indivname: v54.1_1240K.ind
  359. popleft: SBG001_leftlist.txt
  360. popright: rightlist
  361. details: YES
  362. ## qpAdm -p SBG001.qpAdm.par
  363. ## qpAdm version: 2050
  364. seed: 19198322
  365. allsnps set NO. It is recommended that allsnps be set explicitly
  366. *** recommended that inbreed be explicitly set ***
  367. inbreed set NO
  368. read 1073741824 bytes
  369. read 2147483648 bytes
  370. read 3221225472 bytes
  371. read 3467232556 bytes
  372. packed geno read OK
  373. end of inpack
  374.  
  375. left pops:
  376. SBG001 1
  377. Russia_MLBA_Sintashta 36
  378. Russia_Tyumen_HG 1
  379. Mongolia_North_N 5
  380. Iran_C_TepeHissar 13
  381.  
  382. right pops:
  383. Cameroon_SMA.SG 2
  384. Turkey_N.SG 3
  385. Italy_Mesolithic.SG 3
  386. CHG 2
  387. Iran_TepeAbdulHosein_N.SG 3
  388. Russia_Arkhangelsk_Veretye_Mesolithic.SG 1
  389. Russia_DevilsCave_N.SG 4
  390. South_Africa_400BP.SG 4
  391. Nepal_Mebrak_2125BP.SG 2
  392. Russia_Sunghir_UP.SG 4
  393. Russia_Kostenki14.SG 1
  394. Kazakhstan_Botai_Eneolithic.SG 3
  395. Switzerland_Bichon.SG 1
  396. Spain_HG.SG 3
  397.  
  398. jackknife block size: 0.050
  399. snps: 1150466 indivs: 92
  400. number of blocks for block jackknife: 714
  401. ## ncols: 1150466
  402. coverage: SBG001 708050
  403. coverage: Russia_MLBA_Sintashta 1128313
  404. coverage: Russia_Tyumen_HG 805560
  405. coverage: Mongolia_North_N 1057835
  406. coverage: Iran_C_TepeHissar 987000
  407. coverage: Cameroon_SMA.SG 1148928
  408. coverage: Turkey_N.SG 1150163
  409. coverage: Italy_Mesolithic.SG 1141404
  410. coverage: CHG 1147700
  411. coverage: Iran_TepeAbdulHosein_N.SG 1061042
  412. coverage: Russia_Arkhangelsk_Veretye_Mesolithic.SG 1088577
  413. coverage: Russia_DevilsCave_N.SG 1148318
  414. coverage: South_Africa_400BP.SG 1150181
  415. coverage: Nepal_Mebrak_2125BP.SG 594658
  416. coverage: Russia_Sunghir_UP.SG 1150000
  417. coverage: Russia_Kostenki14.SG 1048972
  418. coverage: Kazakhstan_Botai_Eneolithic.SG 1149621
  419. coverage: Switzerland_Bichon.SG 1140092
  420. coverage: Spain_HG.SG 1101680
  421. Effective number of blocks: 630.334
  422. numsnps used: 377425
  423. codimension 1
  424. f4info:
  425. f4rank: 3 dof: 10 chisq: 12.003 tail: 0.284858854 dofdiff: 12 chisqdiff: -12.003 taildiff: 1
  426. B:
  427. scale 1.000 1.000 1.000
  428. Turkey_N.SG 0.899 -0.348 1.093
  429. Italy_Mesolithic.SG 0.984 0.734 1.567
  430. CHG 0.891 -0.473 -0.116
  431. Iran_TepeAbdulHosein_N.SG 0.691 -0.868 -0.992
  432. Russia_Arkhangelsk_Veretye_Mesolithic.SG 1.025 1.638 -0.704
  433. Russia_DevilsCave_N.SG -2.010 1.154 1.003
  434. South_Africa_400BP.SG 0.006 -0.023 0.032
  435. Nepal_Mebrak_2125BP.SG -1.664 1.137 0.524
  436. Russia_Sunghir_UP.SG 0.382 0.515 0.262
  437. Russia_Kostenki14.SG 0.395 0.488 -0.037
  438. Kazakhstan_Botai_Eneolithic.SG 0.534 2.108 -1.895
  439. Switzerland_Bichon.SG 0.927 0.732 1.392
  440. Spain_HG.SG 0.804 0.759 0.990
  441. A:
  442. scale 361.666 521.910 1053.669
  443. Russia_MLBA_Sintashta 1.042 -0.178 0.758
  444. Russia_Tyumen_HG 0.700 1.174 -1.593
  445. Mongolia_North_N -1.497 -0.046 -0.156
  446. Iran_C_TepeHissar 0.428 -1.609 -0.929
  447.  
  448.  
  449. full rank
  450. f4info:
  451. f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 12.003 taildiff: 0.284858854
  452. B:
  453. scale 335.250 288.620 241.464 288.333
  454. Turkey_N.SG 1.193 -0.163 -0.940 0.336
  455. Italy_Mesolithic.SG 1.343 0.436 -0.993 -0.645
  456. CHG 0.970 0.334 -0.811 0.811
  457. Iran_TepeAbdulHosein_N.SG 0.651 0.365 -0.554 1.336
  458. Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.731 2.095 -0.962 -0.855
  459. Russia_DevilsCave_N.SG -1.777 -0.745 1.984 -1.942
  460. South_Africa_400BP.SG -0.050 -0.086 -0.064 -0.057
  461. Nepal_Mebrak_2125BP.SG -1.547 -0.346 1.693 -1.677
  462. Russia_Sunghir_UP.SG 0.415 0.498 -0.387 -0.376
  463. Russia_Kostenki14.SG 0.291 0.554 -0.425 -0.318
  464. Kazakhstan_Botai_Eneolithic.SG -0.145 2.546 -0.482 -1.195
  465. Switzerland_Bichon.SG 0.996 0.245 -1.114 -0.832
  466. Spain_HG.SG 1.026 0.608 -0.795 -0.592
  467. A:
  468. scale 2.000 2.000 2.000 2.000
  469. Russia_MLBA_Sintashta 2.000 0.000 0.000 0.000
  470. Russia_Tyumen_HG 0.000 2.000 0.000 0.000
  471. Mongolia_North_N 0.000 0.000 2.000 0.000
  472. Iran_C_TepeHissar 0.000 0.000 0.000 2.000
  473.  
  474.  
  475. best coefficients: 0.432 0.142 0.380 0.045
  476. Jackknife mean: 0.432310355 0.142162544 0.380468254 0.045058847
  477. std. errors: 0.045 0.025 0.019 0.035
  478.  
  479. error covariance (* 1,000,000)
  480. 2044 -707 -8 -1329
  481. -707 638 -177 246
  482. -8 -177 358 -173
  483. -1329 246 -173 1256
  484.  
  485.  
  486. summ: SBG001 4 0.284859 0.432 0.142 0.380 0.045 2044 -707 -8 -1329 638 ...
  487. -177 246 358 -173 1256
  488.  
  489. fixed pat wt dof chisq tail prob
  490. 0000 0 10 12.003 0.284859 0.432 0.142 0.380 0.045
  491. 0001 1 11 14.752 0.194122 0.480 0.133 0.388 0.000
  492. 0010 1 11 385.394 0 0.359 0.387 0.000 0.254
  493. 0100 1 11 44.045 7.13358e-06 0.581 0.000 0.422 -0.002 infeasible
  494. 1000 1 11 95.823 1.195e-15 0.000 0.299 0.377 0.324
  495. 0011 2 12 421.856 0 0.660 0.340 0.000 0.000
  496. 0101 2 12 43.595 1.78998e-05 0.582 0.000 0.418 0.000
  497. 0110 2 12 543.966 0 0.910 0.000 0.000 0.090
  498. 1001 2 12 308.431 0 0.000 0.522 0.478 0.000
  499. 1010 2 12 418.123 0 0.000 0.546 0.000 0.454
  500. 1100 2 12 289.125 0 0.000 0.000 0.531 0.469
  501. 0111 3 13 546.363 0 1.000 0.000 0.000 0.000
  502. 1011 3 13 679.517 0 0.000 1.000 0.000 0.000
  503. 1101 3 13 891.361 0 0.000 0.000 1.000 0.000
  504. 1110 3 13 1019.745 0 0.000 0.000 0.000 1.000
  505. best pat: 0000 0.284859 - -
  506. best pat: 0001 0.194122 chi(nested): 2.749 p-value for nested model: 0.0972963
  507. best pat: 0101 1.78998e-05 chi(nested): 28.842 p-value for nested model: 7.85158e-08
  508. best pat: 0111 2.03595e-108 chi(nested): 502.769 p-value for nested model: 2.37907e-111
  509.  
  510. coeffs: 0.432 0.142 0.380 0.045
  511.  
  512. ## dscore:: f_4(Base, Fit, Rbase, right2)
  513. ## genstat:: f_4(Base, Fit, right1, right2)
  514.  
  515. details: Russia_MLBA_Sintashta Turkey_N.SG 0.003557 10.441607
  516. details: Russia_Tyumen_HG Turkey_N.SG -0.000563 -1.264087
  517. details: Mongolia_North_N Turkey_N.SG -0.003891 -10.449866
  518. details: Iran_C_TepeHissar Turkey_N.SG 0.001165 3.303568
  519. dscore: Turkey_N.SG f4: 0.000030 Z: 0.092178
  520.  
  521. details: Russia_MLBA_Sintashta Italy_Mesolithic.SG 0.004005 10.203427
  522. details: Russia_Tyumen_HG Italy_Mesolithic.SG 0.001509 2.891718
  523. details: Mongolia_North_N Italy_Mesolithic.SG -0.004112 -9.889405
  524. details: Iran_C_TepeHissar Italy_Mesolithic.SG -0.002237 -5.488410
  525. dscore: Italy_Mesolithic.SG f4: 0.000282 Z: 0.753402
  526.  
  527. details: Russia_MLBA_Sintashta CHG 0.002892 7.330278
  528. details: Russia_Tyumen_HG CHG 0.001158 2.228821
  529. details: Mongolia_North_N CHG -0.003357 -7.598054
  530. details: Iran_C_TepeHissar CHG 0.002812 6.873857
  531. dscore: CHG f4: 0.000264 Z: 0.681420
  532.  
  533. details: Russia_MLBA_Sintashta Iran_TepeAbdulHosein_N.SG 0.001942 5.624946
  534. details: Russia_Tyumen_HG Iran_TepeAbdulHosein_N.SG 0.001265 2.650024
  535. details: Mongolia_North_N Iran_TepeAbdulHosein_N.SG -0.002295 -5.871927
  536. details: Iran_C_TepeHissar Iran_TepeAbdulHosein_N.SG 0.004633 12.857337
  537. dscore: Iran_TepeAbdulHosein_N.SG f4: 0.000355 Z: 1.029802
  538.  
  539. details: Russia_MLBA_Sintashta Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.002181 4.776756
  540. details: Russia_Tyumen_HG Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.007260 11.714772
  541. details: Mongolia_North_N Russia_Arkhangelsk_Veretye_Mesolithic.SG -0.003985 -8.325577
  542. details: Iran_C_TepeHissar Russia_Arkhangelsk_Veretye_Mesolithic.SG -0.002964 -6.256792
  543. dscore: Russia_Arkhangelsk_Veretye_Mesolithic.SG f4: 0.000326 Z: 0.747898
  544.  
  545. details: Russia_MLBA_Sintashta Russia_DevilsCave_N.SG -0.005302 -12.848410
  546. details: Russia_Tyumen_HG Russia_DevilsCave_N.SG -0.002582 -4.916235
  547. details: Mongolia_North_N Russia_DevilsCave_N.SG 0.008216 18.757415
  548. details: Iran_C_TepeHissar Russia_DevilsCave_N.SG -0.006735 -15.448888
  549. dscore: Russia_DevilsCave_N.SG f4: 0.000163 Z: 0.415695
  550.  
  551. details: Russia_MLBA_Sintashta South_Africa_400BP.SG -0.000149 -0.639265
  552. details: Russia_Tyumen_HG South_Africa_400BP.SG -0.000297 -0.962053
  553. details: Mongolia_North_N South_Africa_400BP.SG -0.000266 -1.041313
  554. details: Iran_C_TepeHissar South_Africa_400BP.SG -0.000199 -0.812408
  555. dscore: South_Africa_400BP.SG f4: -0.000217 Z: -0.953960
  556.  
  557. details: Russia_MLBA_Sintashta Nepal_Mebrak_2125BP.SG -0.004614 -10.367521
  558. details: Russia_Tyumen_HG Nepal_Mebrak_2125BP.SG -0.001199 -2.045486
  559. details: Mongolia_North_N Nepal_Mebrak_2125BP.SG 0.007011 14.505464
  560. details: Iran_C_TepeHissar Nepal_Mebrak_2125BP.SG -0.005816 -12.413260
  561. dscore: Nepal_Mebrak_2125BP.SG f4: 0.000241 Z: 0.560412
  562.  
  563. details: Russia_MLBA_Sintashta Russia_Sunghir_UP.SG 0.001238 3.698558
  564. details: Russia_Tyumen_HG Russia_Sunghir_UP.SG 0.001724 3.644306
  565. details: Mongolia_North_N Russia_Sunghir_UP.SG -0.001601 -4.233824
  566. details: Iran_C_TepeHissar Russia_Sunghir_UP.SG -0.001303 -3.616686
  567. dscore: Russia_Sunghir_UP.SG f4: 0.000113 Z: 0.346715
  568.  
  569. details: Russia_MLBA_Sintashta Russia_Kostenki14.SG 0.000867 2.076725
  570. details: Russia_Tyumen_HG Russia_Kostenki14.SG 0.001918 3.421252
  571. details: Mongolia_North_N Russia_Kostenki14.SG -0.001762 -3.844278
  572. details: Iran_C_TepeHissar Russia_Kostenki14.SG -0.001104 -2.543976
  573. dscore: Russia_Kostenki14.SG f4: -0.000072 Z: -0.181282
  574.  
  575. details: Russia_MLBA_Sintashta Kazakhstan_Botai_Eneolithic.SG -0.000433 -1.121157
  576. details: Russia_Tyumen_HG Kazakhstan_Botai_Eneolithic.SG 0.008821 16.737050
  577. details: Mongolia_North_N Kazakhstan_Botai_Eneolithic.SG -0.001997 -4.833081
  578. details: Iran_C_TepeHissar Kazakhstan_Botai_Eneolithic.SG -0.004145 -10.544348
  579. dscore: Kazakhstan_Botai_Eneolithic.SG f4: 0.000121 Z: 0.325146
  580.  
  581. details: Russia_MLBA_Sintashta Switzerland_Bichon.SG 0.002970 6.578641
  582. details: Russia_Tyumen_HG Switzerland_Bichon.SG 0.000851 1.407362
  583. details: Mongolia_North_N Switzerland_Bichon.SG -0.004612 -9.432770
  584. details: Iran_C_TepeHissar Switzerland_Bichon.SG -0.002884 -6.262711
  585. dscore: Switzerland_Bichon.SG f4: -0.000479 Z: -1.101053
  586.  
  587. details: Russia_MLBA_Sintashta Spain_HG.SG 0.003060 8.265933
  588. details: Russia_Tyumen_HG Spain_HG.SG 0.002107 4.283388
  589. details: Mongolia_North_N Spain_HG.SG -0.003294 -8.358108
  590. details: Iran_C_TepeHissar Spain_HG.SG -0.002053 -5.350916
  591. dscore: Spain_HG.SG f4: 0.000277 Z: 0.786489
  592.  
  593. gendstat: Cameroon_SMA.SG Turkey_N.SG 0.092
  594. gendstat: Cameroon_SMA.SG Italy_Mesolithic.SG 0.753
  595. gendstat: Cameroon_SMA.SG CHG 0.681
  596. gendstat: Cameroon_SMA.SG Iran_TepeAbdulHosein_N.SG 1.030
  597. gendstat: Cameroon_SMA.SG Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.748
  598. gendstat: Cameroon_SMA.SG Russia_DevilsCave_N.SG 0.416
  599. gendstat: Cameroon_SMA.SG South_Africa_400BP.SG -0.954
  600. gendstat: Cameroon_SMA.SG Nepal_Mebrak_2125BP.SG 0.560
  601. gendstat: Cameroon_SMA.SG Russia_Sunghir_UP.SG 0.347
  602. gendstat: Cameroon_SMA.SG Russia_Kostenki14.SG -0.181
  603. gendstat: Cameroon_SMA.SG Kazakhstan_Botai_Eneolithic.SG 0.325
  604. gendstat: Cameroon_SMA.SG Switzerland_Bichon.SG -1.101
  605. gendstat: Cameroon_SMA.SG Spain_HG.SG 0.786
  606. gendstat: Turkey_N.SG Italy_Mesolithic.SG 0.747
  607. gendstat: Turkey_N.SG CHG 0.684
  608. gendstat: Turkey_N.SG Iran_TepeAbdulHosein_N.SG 1.028
  609. gendstat: Turkey_N.SG Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.745
  610. gendstat: Turkey_N.SG Russia_DevilsCave_N.SG 0.318
  611. gendstat: Turkey_N.SG South_Africa_400BP.SG -0.788
  612. gendstat: Turkey_N.SG Nepal_Mebrak_2125BP.SG 0.470
  613. gendstat: Turkey_N.SG Russia_Sunghir_UP.SG 0.279
  614. gendstat: Turkey_N.SG Russia_Kostenki14.SG -0.269
  615. gendstat: Turkey_N.SG Kazakhstan_Botai_Eneolithic.SG 0.264
  616. gendstat: Turkey_N.SG Switzerland_Bichon.SG -1.316
  617. gendstat: Turkey_N.SG Spain_HG.SG 0.801
  618. gendstat: Italy_Mesolithic.SG CHG -0.045
  619. gendstat: Italy_Mesolithic.SG Iran_TepeAbdulHosein_N.SG 0.196
  620. gendstat: Italy_Mesolithic.SG Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.109
  621. gendstat: Italy_Mesolithic.SG Russia_DevilsCave_N.SG -0.255
  622. gendstat: Italy_Mesolithic.SG South_Africa_400BP.SG -1.404
  623. gendstat: Italy_Mesolithic.SG Nepal_Mebrak_2125BP.SG -0.084
  624. gendstat: Italy_Mesolithic.SG Russia_Sunghir_UP.SG -0.524
  625. gendstat: Italy_Mesolithic.SG Russia_Kostenki14.SG -0.876
  626. gendstat: Italy_Mesolithic.SG Kazakhstan_Botai_Eneolithic.SG -0.436
  627. gendstat: Italy_Mesolithic.SG Switzerland_Bichon.SG -2.352
  628. gendstat: Italy_Mesolithic.SG Spain_HG.SG -0.016
  629. gendstat: CHG Iran_TepeAbdulHosein_N.SG 0.268
  630. gendstat: CHG Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.149
  631. gendstat: CHG Russia_DevilsCave_N.SG -0.224
  632. gendstat: CHG South_Africa_400BP.SG -1.313
  633. gendstat: CHG Nepal_Mebrak_2125BP.SG -0.050
  634. gendstat: CHG Russia_Sunghir_UP.SG -0.434
  635. gendstat: CHG Russia_Kostenki14.SG -0.782
  636. gendstat: CHG Kazakhstan_Botai_Eneolithic.SG -0.391
  637. gendstat: CHG Switzerland_Bichon.SG -1.677
  638. gendstat: CHG Spain_HG.SG 0.036
  639. gendstat: Iran_TepeAbdulHosein_N.SG Russia_Arkhangelsk_Veretye_Mesolithic.SG -0.070
  640. gendstat: Iran_TepeAbdulHosein_N.SG Russia_DevilsCave_N.SG -0.468
  641. gendstat: Iran_TepeAbdulHosein_N.SG South_Africa_400BP.SG -1.793
  642. gendstat: Iran_TepeAbdulHosein_N.SG Nepal_Mebrak_2125BP.SG -0.258
  643. gendstat: Iran_TepeAbdulHosein_N.SG Russia_Sunghir_UP.SG -0.756
  644. gendstat: Iran_TepeAbdulHosein_N.SG Russia_Kostenki14.SG -1.074
  645. gendstat: Iran_TepeAbdulHosein_N.SG Kazakhstan_Botai_Eneolithic.SG -0.703
  646. gendstat: Iran_TepeAbdulHosein_N.SG Switzerland_Bichon.SG -1.950
  647. gendstat: Iran_TepeAbdulHosein_N.SG Spain_HG.SG -0.229
  648. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Russia_DevilsCave_N.SG -0.334
  649. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG South_Africa_400BP.SG -1.322
  650. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Nepal_Mebrak_2125BP.SG -0.164
  651. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Russia_Sunghir_UP.SG -0.540
  652. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Russia_Kostenki14.SG -0.891
  653. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Kazakhstan_Botai_Eneolithic.SG -0.544
  654. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Switzerland_Bichon.SG -1.779
  655. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Spain_HG.SG -0.133
  656. gendstat: Russia_DevilsCave_N.SG South_Africa_400BP.SG -0.999
  657. gendstat: Russia_DevilsCave_N.SG Nepal_Mebrak_2125BP.SG 0.209
  658. gendstat: Russia_DevilsCave_N.SG Russia_Sunghir_UP.SG -0.130
  659. gendstat: Russia_DevilsCave_N.SG Russia_Kostenki14.SG -0.517
  660. gendstat: Russia_DevilsCave_N.SG Kazakhstan_Botai_Eneolithic.SG -0.108
  661. gendstat: Russia_DevilsCave_N.SG Switzerland_Bichon.SG -1.263
  662. gendstat: Russia_DevilsCave_N.SG Spain_HG.SG 0.268
  663. gendstat: South_Africa_400BP.SG Nepal_Mebrak_2125BP.SG 1.084
  664. gendstat: South_Africa_400BP.SG Russia_Sunghir_UP.SG 1.085
  665. gendstat: South_Africa_400BP.SG Russia_Kostenki14.SG 0.370
  666. gendstat: South_Africa_400BP.SG Kazakhstan_Botai_Eneolithic.SG 0.950
  667. gendstat: South_Africa_400BP.SG Switzerland_Bichon.SG -0.627
  668. gendstat: South_Africa_400BP.SG Spain_HG.SG 1.487
  669. gendstat: Nepal_Mebrak_2125BP.SG Russia_Sunghir_UP.SG -0.300
  670. gendstat: Nepal_Mebrak_2125BP.SG Russia_Kostenki14.SG -0.644
  671. gendstat: Nepal_Mebrak_2125BP.SG Kazakhstan_Botai_Eneolithic.SG -0.284
  672. gendstat: Nepal_Mebrak_2125BP.SG Switzerland_Bichon.SG -1.379
  673. gendstat: Nepal_Mebrak_2125BP.SG Spain_HG.SG 0.081
  674. gendstat: Russia_Sunghir_UP.SG Russia_Kostenki14.SG -0.531
  675. gendstat: Russia_Sunghir_UP.SG Kazakhstan_Botai_Eneolithic.SG 0.026
  676. gendstat: Russia_Sunghir_UP.SG Switzerland_Bichon.SG -1.523
  677. gendstat: Russia_Sunghir_UP.SG Spain_HG.SG 0.548
  678. gendstat: Russia_Kostenki14.SG Kazakhstan_Botai_Eneolithic.SG 0.496
  679. gendstat: Russia_Kostenki14.SG Switzerland_Bichon.SG -0.892
  680. gendstat: Russia_Kostenki14.SG Spain_HG.SG 0.904
  681. gendstat: Kazakhstan_Botai_Eneolithic.SG Switzerland_Bichon.SG -1.445
  682. gendstat: Kazakhstan_Botai_Eneolithic.SG Spain_HG.SG 0.467
  683. gendstat: Switzerland_Bichon.SG Spain_HG.SG 2.242
  684.  
  685. worst Z-score with right hand mix
  686. f4(Target, Fit, Base, mix of Right pops; Z: -3.370 sum: 1.000
  687. Turkey_N.SG 0.678
  688. Italy_Mesolithic.SG -2.732
  689. CHG -0.431
  690. Iran_TepeAbdulHosein_N.SG -2.065
  691. Russia_Arkhangelsk_Veretye_Mesolithic.SG -0.901
  692. Russia_DevilsCave_N.SG -0.217
  693. South_Africa_400BP.SG 3.963
  694. Nepal_Mebrak_2125BP.SG -0.619
  695. Russia_Sunghir_UP.SG -0.222
  696. Russia_Kostenki14.SG 0.936
  697. Kazakhstan_Botai_Eneolithic.SG 0.711
  698. Switzerland_Bichon.SG 3.690
  699. Spain_HG.SG -1.792
  700.  
  701. oldmode set: terminating
  702. ##end of qpAdm: 29.236 seconds cpu 1628.684 Mbytes in use
  703. qpAdm: parameter file: ULI001.qpAdm.par
  704. ### THE INPUT PARAMETERS
  705. ##PARAMETER NAME: VALUE
  706. genotypename: v54.1_1240K.geno
  707. snpname: v54.1_1240K.snp
  708. indivname: v54.1_1240K.ind
  709. popleft: ULI001_leftlist.txt
  710. popright: rightlist
  711. details: YES
  712. ## qpAdm -p ULI001.qpAdm.par
  713. ## qpAdm version: 2050
  714. seed: 9010155
  715. allsnps set NO. It is recommended that allsnps be set explicitly
  716. *** recommended that inbreed be explicitly set ***
  717. inbreed set NO
  718. read 1073741824 bytes
  719. read 2147483648 bytes
  720. read 3221225472 bytes
  721. read 3467232556 bytes
  722. packed geno read OK
  723. end of inpack
  724.  
  725. left pops:
  726. ULI001 1
  727. Russia_MLBA_Sintashta 36
  728. Russia_Tyumen_HG 1
  729. Mongolia_North_N 5
  730. Iran_C_TepeHissar 13
  731.  
  732. right pops:
  733. Cameroon_SMA.SG 2
  734. Turkey_N.SG 3
  735. Italy_Mesolithic.SG 3
  736. CHG 2
  737. Iran_TepeAbdulHosein_N.SG 3
  738. Russia_Arkhangelsk_Veretye_Mesolithic.SG 1
  739. Russia_DevilsCave_N.SG 4
  740. South_Africa_400BP.SG 4
  741. Nepal_Mebrak_2125BP.SG 2
  742. Russia_Sunghir_UP.SG 4
  743. Russia_Kostenki14.SG 1
  744. Kazakhstan_Botai_Eneolithic.SG 3
  745. Switzerland_Bichon.SG 1
  746. Spain_HG.SG 3
  747.  
  748. jackknife block size: 0.050
  749. snps: 1150466 indivs: 92
  750. number of blocks for block jackknife: 714
  751. ## ncols: 1150466
  752. coverage: ULI001 1009584
  753. coverage: Russia_MLBA_Sintashta 1128313
  754. coverage: Russia_Tyumen_HG 805560
  755. coverage: Mongolia_North_N 1057835
  756. coverage: Iran_C_TepeHissar 987000
  757. coverage: Cameroon_SMA.SG 1148928
  758. coverage: Turkey_N.SG 1150163
  759. coverage: Italy_Mesolithic.SG 1141404
  760. coverage: CHG 1147700
  761. coverage: Iran_TepeAbdulHosein_N.SG 1061042
  762. coverage: Russia_Arkhangelsk_Veretye_Mesolithic.SG 1088577
  763. coverage: Russia_DevilsCave_N.SG 1148318
  764. coverage: South_Africa_400BP.SG 1150181
  765. coverage: Nepal_Mebrak_2125BP.SG 594658
  766. coverage: Russia_Sunghir_UP.SG 1150000
  767. coverage: Russia_Kostenki14.SG 1048972
  768. coverage: Kazakhstan_Botai_Eneolithic.SG 1149621
  769. coverage: Switzerland_Bichon.SG 1140092
  770. coverage: Spain_HG.SG 1101680
  771. Effective number of blocks: 630.649
  772. numsnps used: 462775
  773. codimension 1
  774. f4info:
  775. f4rank: 3 dof: 10 chisq: 9.094 tail: 0.523225147 dofdiff: 12 chisqdiff: -9.094 taildiff: 1
  776. B:
  777. scale 1.000 1.000 1.000
  778. Turkey_N.SG 0.941 -0.319 1.091
  779. Italy_Mesolithic.SG 1.065 0.792 1.421
  780. CHG 0.848 -0.545 -0.101
  781. Iran_TepeAbdulHosein_N.SG 0.607 -0.961 -0.931
  782. Russia_Arkhangelsk_Veretye_Mesolithic.SG 1.033 1.545 -0.869
  783. Russia_DevilsCave_N.SG -1.947 1.263 1.027
  784. South_Africa_400BP.SG 0.008 -0.042 0.055
  785. Nepal_Mebrak_2125BP.SG -1.638 1.229 0.444
  786. Russia_Sunghir_UP.SG 0.406 0.510 0.187
  787. Russia_Kostenki14.SG 0.403 0.437 -0.127
  788. Kazakhstan_Botai_Eneolithic.SG 0.508 1.975 -2.138
  789. Switzerland_Bichon.SG 1.015 0.790 1.207
  790. Spain_HG.SG 0.858 0.760 0.908
  791. A:
  792. scale 355.986 511.063 961.473
  793. Russia_MLBA_Sintashta 0.877 -0.179 0.535
  794. Russia_Tyumen_HG 0.510 1.089 -1.747
  795. Mongolia_North_N -1.713 0.017 -0.076
  796. Iran_C_TepeHissar 0.198 -1.668 -0.810
  797.  
  798.  
  799. full rank
  800. f4info:
  801. f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 9.094 taildiff: 0.523225147
  802. B:
  803. scale 400.173 319.611 203.048 273.191
  804. Turkey_N.SG 1.029 -0.560 -1.048 0.035
  805. Italy_Mesolithic.SG 1.168 0.120 -1.116 -0.959
  806. CHG 0.750 -0.035 -0.906 0.526
  807. Iran_TepeAbdulHosein_N.SG 0.432 0.090 -0.645 1.071
  808. Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.654 2.102 -0.965 -1.013
  809. Russia_DevilsCave_N.SG -1.957 -0.694 1.854 -1.739
  810. South_Africa_400BP.SG -0.022 -0.092 -0.036 -0.023
  811. Nepal_Mebrak_2125BP.SG -1.916 -0.396 1.484 -1.623
  812. Russia_Sunghir_UP.SG 0.182 0.267 -0.507 -0.587
  813. Russia_Kostenki14.SG 0.085 0.365 -0.516 -0.473
  814. Kazakhstan_Botai_Eneolithic.SG -0.405 2.700 -0.542 -1.320
  815. Switzerland_Bichon.SG 1.008 0.150 -1.092 -0.957
  816. Spain_HG.SG 0.822 0.289 -0.916 -0.862
  817. A:
  818. scale 2.000 2.000 2.000 2.000
  819. Russia_MLBA_Sintashta 2.000 0.000 0.000 0.000
  820. Russia_Tyumen_HG 0.000 2.000 0.000 0.000
  821. Mongolia_North_N 0.000 0.000 2.000 0.000
  822. Iran_C_TepeHissar 0.000 0.000 0.000 2.000
  823.  
  824.  
  825. best coefficients: 0.524 0.132 0.311 0.033
  826. Jackknife mean: 0.523811774 0.131787773 0.311255602 0.033144851
  827. std. errors: 0.044 0.025 0.018 0.034
  828.  
  829. error covariance (* 1,000,000)
  830. 1935 -647 -15 -1273
  831. -647 603 -173 217
  832. -15 -173 316 -129
  833. -1273 217 -129 1185
  834.  
  835.  
  836. summ: ULI001 4 0.523225 0.524 0.132 0.311 0.033 1935 -647 -15 -1273 603 ...
  837. -173 217 316 -129 1185
  838.  
  839. fixed pat wt dof chisq tail prob
  840. 0000 0 10 9.094 0.523225 0.524 0.132 0.311 0.033
  841. 0001 1 11 12.471 0.329305 0.563 0.126 0.311 0.000
  842. 0010 1 11 292.114 0 0.518 0.337 0.000 0.145
  843. 0100 1 11 37.282 0.000103352 0.664 0.000 0.349 -0.013 infeasible
  844. 1000 1 11 137.386 5.53659e-24 0.000 0.318 0.312 0.370
  845. 0011 2 12 306.708 0 0.683 0.317 0.000 0.000
  846. 0101 2 12 39.683 8.11529e-05 0.655 0.000 0.345 0.000
  847. 0110 2 12 440.894 0 0.972 0.000 0.000 0.028
  848. 1001 2 12 431.989 0 0.000 0.601 0.399 0.000
  849. 1010 2 12 376.931 0 0.000 0.557 0.000 0.443
  850. 1100 2 12 358.258 0 0.000 0.000 0.458 0.542
  851. 0111 3 13 441.046 0 1.000 0.000 0.000 0.000
  852. 1011 3 13 665.028 0 0.000 1.000 0.000 0.000
  853. 1101 3 13 1186.946 0 0.000 0.000 1.000 0.000
  854. 1110 3 13 1028.765 0 0.000 0.000 0.000 1.000
  855. best pat: 0000 0.523225 - -
  856. best pat: 0001 0.329305 chi(nested): 3.377 p-value for nested model: 0.0661071
  857. best pat: 0101 8.11529e-05 chi(nested): 27.212 p-value for nested model: 1.82298e-07
  858. best pat: 0111 4.66481e-86 chi(nested): 401.363 p-value for nested model: 2.78875e-89
  859.  
  860. coeffs: 0.524 0.132 0.311 0.033
  861.  
  862. ## dscore:: f_4(Base, Fit, Rbase, right2)
  863. ## genstat:: f_4(Base, Fit, right1, right2)
  864.  
  865. details: Russia_MLBA_Sintashta Turkey_N.SG 0.002572 7.740617
  866. details: Russia_Tyumen_HG Turkey_N.SG -0.001752 -3.995013
  867. details: Mongolia_North_N Turkey_N.SG -0.005160 -14.041999
  868. details: Iran_C_TepeHissar Turkey_N.SG 0.000129 0.368583
  869. dscore: Turkey_N.SG f4: -0.000485 Z: -1.518038
  870.  
  871. details: Russia_MLBA_Sintashta Italy_Mesolithic.SG 0.002919 7.136561
  872. details: Russia_Tyumen_HG Italy_Mesolithic.SG 0.000376 0.712808
  873. details: Mongolia_North_N Italy_Mesolithic.SG -0.005495 -12.342459
  874. details: Iran_C_TepeHissar Italy_Mesolithic.SG -0.003512 -8.358632
  875. dscore: Italy_Mesolithic.SG f4: -0.000247 Z: -0.623563
  876.  
  877. details: Russia_MLBA_Sintashta CHG 0.001874 5.052048
  878. details: Russia_Tyumen_HG CHG -0.000110 -0.223652
  879. details: Mongolia_North_N CHG -0.004462 -10.576897
  880. details: Iran_C_TepeHissar CHG 0.001924 4.788468
  881. dscore: CHG f4: -0.000358 Z: -0.987111
  882.  
  883. details: Russia_MLBA_Sintashta Iran_TepeAbdulHosein_N.SG 0.001080 3.262568
  884. details: Russia_Tyumen_HG Iran_TepeAbdulHosein_N.SG 0.000282 0.623352
  885. details: Mongolia_North_N Iran_TepeAbdulHosein_N.SG -0.003174 -8.541045
  886. details: Iran_C_TepeHissar Iran_TepeAbdulHosein_N.SG 0.003920 11.070724
  887. dscore: Iran_TepeAbdulHosein_N.SG f4: -0.000256 Z: -0.789833
  888.  
  889. details: Russia_MLBA_Sintashta Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.001635 3.790406
  890. details: Russia_Tyumen_HG Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.006576 10.932118
  891. details: Mongolia_North_N Russia_Arkhangelsk_Veretye_Mesolithic.SG -0.004750 -9.655456
  892. details: Iran_C_TepeHissar Russia_Arkhangelsk_Veretye_Mesolithic.SG -0.003707 -8.021767
  893. dscore: Russia_Arkhangelsk_Veretye_Mesolithic.SG f4: 0.000123 Z: 0.289131
  894.  
  895. details: Russia_MLBA_Sintashta Russia_DevilsCave_N.SG -0.004890 -13.090117
  896. details: Russia_Tyumen_HG Russia_DevilsCave_N.SG -0.002171 -4.487680
  897. details: Mongolia_North_N Russia_DevilsCave_N.SG 0.009131 21.213053
  898. details: Iran_C_TepeHissar Russia_DevilsCave_N.SG -0.006366 -16.127686
  899. dscore: Russia_DevilsCave_N.SG f4: -0.000216 Z: -0.595526
  900.  
  901. details: Russia_MLBA_Sintashta South_Africa_400BP.SG -0.000054 -0.237465
  902. details: Russia_Tyumen_HG South_Africa_400BP.SG -0.000289 -0.970480
  903. details: Mongolia_North_N South_Africa_400BP.SG -0.000177 -0.709019
  904. details: Iran_C_TepeHissar South_Africa_400BP.SG -0.000083 -0.337197
  905. dscore: South_Africa_400BP.SG f4: -0.000124 Z: -0.560968
  906.  
  907. details: Russia_MLBA_Sintashta Nepal_Mebrak_2125BP.SG -0.004789 -11.996683
  908. details: Russia_Tyumen_HG Nepal_Mebrak_2125BP.SG -0.001238 -2.255305
  909. details: Mongolia_North_N Nepal_Mebrak_2125BP.SG 0.007309 15.517844
  910. details: Iran_C_TepeHissar Nepal_Mebrak_2125BP.SG -0.005939 -14.118735
  911. dscore: Nepal_Mebrak_2125BP.SG f4: -0.000593 Z: -1.504060
  912.  
  913. details: Russia_MLBA_Sintashta Russia_Sunghir_UP.SG 0.000455 1.396728
  914. details: Russia_Tyumen_HG Russia_Sunghir_UP.SG 0.000835 1.801281
  915. details: Mongolia_North_N Russia_Sunghir_UP.SG -0.002495 -6.574077
  916. details: Iran_C_TepeHissar Russia_Sunghir_UP.SG -0.002150 -6.060958
  917. dscore: Russia_Sunghir_UP.SG f4: -0.000499 Z: -1.561702
  918.  
  919. details: Russia_MLBA_Sintashta Russia_Kostenki14.SG 0.000213 0.550131
  920. details: Russia_Tyumen_HG Russia_Kostenki14.SG 0.001141 1.984394
  921. details: Mongolia_North_N Russia_Kostenki14.SG -0.002542 -5.405927
  922. details: Iran_C_TepeHissar Russia_Kostenki14.SG -0.001733 -4.058236
  923. dscore: Russia_Kostenki14.SG f4: -0.000586 Z: -1.500720
  924.  
  925. details: Russia_MLBA_Sintashta Kazakhstan_Botai_Eneolithic.SG -0.001012 -2.988763
  926. details: Russia_Tyumen_HG Kazakhstan_Botai_Eneolithic.SG 0.008447 17.453348
  927. details: Mongolia_North_N Kazakhstan_Botai_Eneolithic.SG -0.002668 -6.660914
  928. details: Iran_C_TepeHissar Kazakhstan_Botai_Eneolithic.SG -0.004833 -13.293612
  929. dscore: Kazakhstan_Botai_Eneolithic.SG f4: -0.000407 Z: -1.210866
  930.  
  931. details: Russia_MLBA_Sintashta Switzerland_Bichon.SG 0.002519 5.778045
  932. details: Russia_Tyumen_HG Switzerland_Bichon.SG 0.000469 0.784499
  933. details: Mongolia_North_N Switzerland_Bichon.SG -0.005380 -10.983228
  934. details: Iran_C_TepeHissar Switzerland_Bichon.SG -0.003503 -7.687935
  935. dscore: Switzerland_Bichon.SG f4: -0.000408 Z: -0.955776
  936.  
  937. details: Russia_MLBA_Sintashta Spain_HG.SG 0.002055 5.633340
  938. details: Russia_Tyumen_HG Spain_HG.SG 0.000905 1.809091
  939. details: Mongolia_North_N Spain_HG.SG -0.004512 -10.839753
  940. details: Iran_C_TepeHissar Spain_HG.SG -0.003156 -8.176445
  941. dscore: Spain_HG.SG f4: -0.000312 Z: -0.864615
  942.  
  943. gendstat: Cameroon_SMA.SG Turkey_N.SG -1.518
  944. gendstat: Cameroon_SMA.SG Italy_Mesolithic.SG -0.624
  945. gendstat: Cameroon_SMA.SG CHG -0.987
  946. gendstat: Cameroon_SMA.SG Iran_TepeAbdulHosein_N.SG -0.790
  947. gendstat: Cameroon_SMA.SG Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.289
  948. gendstat: Cameroon_SMA.SG Russia_DevilsCave_N.SG -0.596
  949. gendstat: Cameroon_SMA.SG South_Africa_400BP.SG -0.561
  950. gendstat: Cameroon_SMA.SG Nepal_Mebrak_2125BP.SG -1.504
  951. gendstat: Cameroon_SMA.SG Russia_Sunghir_UP.SG -1.562
  952. gendstat: Cameroon_SMA.SG Russia_Kostenki14.SG -1.501
  953. gendstat: Cameroon_SMA.SG Kazakhstan_Botai_Eneolithic.SG -1.211
  954. gendstat: Cameroon_SMA.SG Switzerland_Bichon.SG -0.956
  955. gendstat: Cameroon_SMA.SG Spain_HG.SG -0.865
  956. gendstat: Turkey_N.SG Italy_Mesolithic.SG 0.704
  957. gendstat: Turkey_N.SG CHG 0.392
  958. gendstat: Turkey_N.SG Iran_TepeAbdulHosein_N.SG 0.759
  959. gendstat: Turkey_N.SG Russia_Arkhangelsk_Veretye_Mesolithic.SG 1.531
  960. gendstat: Turkey_N.SG Russia_DevilsCave_N.SG 0.680
  961. gendstat: Turkey_N.SG South_Africa_400BP.SG 1.199
  962. gendstat: Turkey_N.SG Nepal_Mebrak_2125BP.SG -0.240
  963. gendstat: Turkey_N.SG Russia_Sunghir_UP.SG -0.046
  964. gendstat: Turkey_N.SG Russia_Kostenki14.SG -0.272
  965. gendstat: Turkey_N.SG Kazakhstan_Botai_Eneolithic.SG 0.237
  966. gendstat: Turkey_N.SG Switzerland_Bichon.SG 0.197
  967. gendstat: Turkey_N.SG Spain_HG.SG 0.560
  968. gendstat: Italy_Mesolithic.SG CHG -0.283
  969. gendstat: Italy_Mesolithic.SG Iran_TepeAbdulHosein_N.SG -0.024
  970. gendstat: Italy_Mesolithic.SG Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.913
  971. gendstat: Italy_Mesolithic.SG Russia_DevilsCave_N.SG 0.066
  972. gendstat: Italy_Mesolithic.SG South_Africa_400BP.SG 0.322
  973. gendstat: Italy_Mesolithic.SG Nepal_Mebrak_2125BP.SG -0.695
  974. gendstat: Italy_Mesolithic.SG Russia_Sunghir_UP.SG -0.731
  975. gendstat: Italy_Mesolithic.SG Russia_Kostenki14.SG -0.812
  976. gendstat: Italy_Mesolithic.SG Kazakhstan_Botai_Eneolithic.SG -0.425
  977. gendstat: Italy_Mesolithic.SG Switzerland_Bichon.SG -0.517
  978. gendstat: Italy_Mesolithic.SG Spain_HG.SG -0.239
  979. gendstat: CHG Iran_TepeAbdulHosein_N.SG 0.310
  980. gendstat: CHG Russia_Arkhangelsk_Veretye_Mesolithic.SG 1.160
  981. gendstat: CHG Russia_DevilsCave_N.SG 0.324
  982. gendstat: CHG South_Africa_400BP.SG 0.678
  983. gendstat: CHG Nepal_Mebrak_2125BP.SG -0.490
  984. gendstat: CHG Russia_Sunghir_UP.SG -0.400
  985. gendstat: CHG Russia_Kostenki14.SG -0.570
  986. gendstat: CHG Kazakhstan_Botai_Eneolithic.SG -0.131
  987. gendstat: CHG Switzerland_Bichon.SG -0.118
  988. gendstat: CHG Spain_HG.SG 0.123
  989. gendstat: Iran_TepeAbdulHosein_N.SG Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.954
  990. gendstat: Iran_TepeAbdulHosein_N.SG Russia_DevilsCave_N.SG 0.101
  991. gendstat: Iran_TepeAbdulHosein_N.SG South_Africa_400BP.SG 0.439
  992. gendstat: Iran_TepeAbdulHosein_N.SG Nepal_Mebrak_2125BP.SG -0.772
  993. gendstat: Iran_TepeAbdulHosein_N.SG Russia_Sunghir_UP.SG -0.760
  994. gendstat: Iran_TepeAbdulHosein_N.SG Russia_Kostenki14.SG -0.864
  995. gendstat: Iran_TepeAbdulHosein_N.SG Kazakhstan_Botai_Eneolithic.SG -0.452
  996. gendstat: Iran_TepeAbdulHosein_N.SG Switzerland_Bichon.SG -0.361
  997. gendstat: Iran_TepeAbdulHosein_N.SG Spain_HG.SG -0.167
  998. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Russia_DevilsCave_N.SG -0.715
  999. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG South_Africa_400BP.SG -0.609
  1000. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Nepal_Mebrak_2125BP.SG -1.399
  1001. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Russia_Sunghir_UP.SG -1.640
  1002. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Russia_Kostenki14.SG -1.586
  1003. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Kazakhstan_Botai_Eneolithic.SG -1.466
  1004. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Switzerland_Bichon.SG -1.216
  1005. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Spain_HG.SG -1.119
  1006. gendstat: Russia_DevilsCave_N.SG South_Africa_400BP.SG 0.253
  1007. gendstat: Russia_DevilsCave_N.SG Nepal_Mebrak_2125BP.SG -1.008
  1008. gendstat: Russia_DevilsCave_N.SG Russia_Sunghir_UP.SG -0.737
  1009. gendstat: Russia_DevilsCave_N.SG Russia_Kostenki14.SG -0.824
  1010. gendstat: Russia_DevilsCave_N.SG Kazakhstan_Botai_Eneolithic.SG -0.487
  1011. gendstat: Russia_DevilsCave_N.SG Switzerland_Bichon.SG -0.384
  1012. gendstat: Russia_DevilsCave_N.SG Spain_HG.SG -0.223
  1013. gendstat: South_Africa_400BP.SG Nepal_Mebrak_2125BP.SG -1.209
  1014. gendstat: South_Africa_400BP.SG Russia_Sunghir_UP.SG -1.219
  1015. gendstat: South_Africa_400BP.SG Russia_Kostenki14.SG -1.204
  1016. gendstat: South_Africa_400BP.SG Kazakhstan_Botai_Eneolithic.SG -0.847
  1017. gendstat: South_Africa_400BP.SG Switzerland_Bichon.SG -0.686
  1018. gendstat: South_Africa_400BP.SG Spain_HG.SG -0.555
  1019. gendstat: Nepal_Mebrak_2125BP.SG Russia_Sunghir_UP.SG 0.223
  1020. gendstat: Nepal_Mebrak_2125BP.SG Russia_Kostenki14.SG 0.015
  1021. gendstat: Nepal_Mebrak_2125BP.SG Kazakhstan_Botai_Eneolithic.SG 0.443
  1022. gendstat: Nepal_Mebrak_2125BP.SG Switzerland_Bichon.SG 0.357
  1023. gendstat: Nepal_Mebrak_2125BP.SG Spain_HG.SG 0.612
  1024. gendstat: Russia_Sunghir_UP.SG Russia_Kostenki14.SG -0.250
  1025. gendstat: Russia_Sunghir_UP.SG Kazakhstan_Botai_Eneolithic.SG 0.290
  1026. gendstat: Russia_Sunghir_UP.SG Switzerland_Bichon.SG 0.239
  1027. gendstat: Russia_Sunghir_UP.SG Spain_HG.SG 0.593
  1028. gendstat: Russia_Kostenki14.SG Kazakhstan_Botai_Eneolithic.SG 0.455
  1029. gendstat: Russia_Kostenki14.SG Switzerland_Bichon.SG 0.401
  1030. gendstat: Russia_Kostenki14.SG Spain_HG.SG 0.720
  1031. gendstat: Kazakhstan_Botai_Eneolithic.SG Switzerland_Bichon.SG -0.004
  1032. gendstat: Kazakhstan_Botai_Eneolithic.SG Spain_HG.SG 0.281
  1033. gendstat: Switzerland_Bichon.SG Spain_HG.SG 0.285
  1034.  
  1035. worst Z-score with right hand mix
  1036. f4(Target, Fit, Base, mix of Right pops; Z: -2.870 sum: 1.000
  1037. Turkey_N.SG 0.639
  1038. Italy_Mesolithic.SG -0.281
  1039. CHG 0.137
  1040. Iran_TepeAbdulHosein_N.SG -0.123
  1041. Russia_Arkhangelsk_Veretye_Mesolithic.SG -0.777
  1042. Russia_DevilsCave_N.SG -0.310
  1043. South_Africa_400BP.SG -0.246
  1044. Nepal_Mebrak_2125BP.SG 0.530
  1045. Russia_Sunghir_UP.SG 0.564
  1046. Russia_Kostenki14.SG 0.338
  1047. Kazakhstan_Botai_Eneolithic.SG 0.441
  1048. Switzerland_Bichon.SG 0.209
  1049. Spain_HG.SG -0.121
  1050.  
  1051. oldmode set: terminating
  1052. ##end of qpAdm: 29.813 seconds cpu 1628.684 Mbytes in use
  1053. qpAdm: parameter file: I7033.qpAdm.par
  1054. ### THE INPUT PARAMETERS
  1055. ##PARAMETER NAME: VALUE
  1056. genotypename: v54.1_1240K.geno
  1057. snpname: v54.1_1240K.snp
  1058. indivname: v54.1_1240K.ind
  1059. popleft: I7033_leftlist.txt
  1060. popright: rightlist
  1061. details: YES
  1062. ## qpAdm -p I7033.qpAdm.par
  1063. ## qpAdm version: 2050
  1064. seed: 11404964
  1065. allsnps set NO. It is recommended that allsnps be set explicitly
  1066. *** recommended that inbreed be explicitly set ***
  1067. inbreed set NO
  1068. read 1073741824 bytes
  1069. read 2147483648 bytes
  1070. read 3221225472 bytes
  1071. read 3467232556 bytes
  1072. packed geno read OK
  1073. end of inpack
  1074.  
  1075. left pops:
  1076. I7033 1
  1077. Russia_MLBA_Sintashta 36
  1078. Russia_Tyumen_HG 1
  1079. Mongolia_North_N 5
  1080. Iran_C_TepeHissar 13
  1081.  
  1082. right pops:
  1083. Cameroon_SMA.SG 2
  1084. Turkey_N.SG 3
  1085. Italy_Mesolithic.SG 3
  1086. CHG 2
  1087. Iran_TepeAbdulHosein_N.SG 3
  1088. Russia_Arkhangelsk_Veretye_Mesolithic.SG 1
  1089. Russia_DevilsCave_N.SG 4
  1090. South_Africa_400BP.SG 4
  1091. Nepal_Mebrak_2125BP.SG 2
  1092. Russia_Sunghir_UP.SG 4
  1093. Russia_Kostenki14.SG 1
  1094. Kazakhstan_Botai_Eneolithic.SG 3
  1095. Switzerland_Bichon.SG 1
  1096. Spain_HG.SG 3
  1097.  
  1098. jackknife block size: 0.050
  1099. snps: 1150467 indivs: 92
  1100. number of blocks for block jackknife: 714
  1101. ## ncols: 1150467
  1102. coverage: I7033 865334
  1103. coverage: Russia_MLBA_Sintashta 1128313
  1104. coverage: Russia_Tyumen_HG 805560
  1105. coverage: Mongolia_North_N 1057835
  1106. coverage: Iran_C_TepeHissar 987000
  1107. coverage: Cameroon_SMA.SG 1148928
  1108. coverage: Turkey_N.SG 1150163
  1109. coverage: Italy_Mesolithic.SG 1141404
  1110. coverage: CHG 1147700
  1111. coverage: Iran_TepeAbdulHosein_N.SG 1061042
  1112. coverage: Russia_Arkhangelsk_Veretye_Mesolithic.SG 1088577
  1113. coverage: Russia_DevilsCave_N.SG 1148318
  1114. coverage: South_Africa_400BP.SG 1150181
  1115. coverage: Nepal_Mebrak_2125BP.SG 594658
  1116. coverage: Russia_Sunghir_UP.SG 1150000
  1117. coverage: Russia_Kostenki14.SG 1048972
  1118. coverage: Kazakhstan_Botai_Eneolithic.SG 1149621
  1119. coverage: Switzerland_Bichon.SG 1140092
  1120. coverage: Spain_HG.SG 1101680
  1121. Effective number of blocks: 631.175
  1122. numsnps used: 439543
  1123. codimension 1
  1124. f4info:
  1125. f4rank: 3 dof: 10 chisq: 13.320 tail: 0.206338401 dofdiff: 12 chisqdiff: -13.320 taildiff: 1
  1126. B:
  1127. scale 1.000 1.000 1.000
  1128. Turkey_N.SG 0.931 -0.348 1.063
  1129. Italy_Mesolithic.SG 1.026 0.725 1.500
  1130. CHG 0.864 -0.532 -0.139
  1131. Iran_TepeAbdulHosein_N.SG 0.632 -0.902 -0.990
  1132. Russia_Arkhangelsk_Veretye_Mesolithic.SG 1.011 1.594 -0.656
  1133. Russia_DevilsCave_N.SG -1.984 1.159 1.129
  1134. South_Africa_400BP.SG 0.006 -0.044 0.034
  1135. Nepal_Mebrak_2125BP.SG -1.659 1.162 0.591
  1136. Russia_Sunghir_UP.SG 0.393 0.515 0.239
  1137. Russia_Kostenki14.SG 0.406 0.483 -0.118
  1138. Kazakhstan_Botai_Eneolithic.SG 0.504 2.096 -1.932
  1139. Switzerland_Bichon.SG 0.977 0.753 1.327
  1140. Spain_HG.SG 0.834 0.748 1.000
  1141. A:
  1142. scale 356.837 515.554 1012.465
  1143. Russia_MLBA_Sintashta 0.926 -0.125 0.654
  1144. Russia_Tyumen_HG 0.544 1.240 -1.631
  1145. Mongolia_North_N -1.665 0.044 -0.073
  1146. Iran_C_TepeHissar 0.276 -1.564 -0.952
  1147.  
  1148.  
  1149. full rank
  1150. f4info:
  1151. f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 13.320 taildiff: 0.206338401
  1152. B:
  1153. scale 385.664 302.170 210.027 293.483
  1154. Turkey_N.SG 1.168 -0.388 -0.977 0.163
  1155. Italy_Mesolithic.SG 1.306 0.236 -1.045 -0.878
  1156. CHG 0.740 -0.031 -0.935 0.585
  1157. Iran_TepeAbdulHosein_N.SG 0.448 0.092 -0.646 1.183
  1158. Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.850 2.143 -0.878 -0.914
  1159. Russia_DevilsCave_N.SG -1.912 -0.700 1.882 -1.896
  1160. South_Africa_400BP.SG -0.019 -0.080 -0.041 -0.013
  1161. Nepal_Mebrak_2125BP.SG -1.539 -0.115 1.700 -1.523
  1162. Russia_Sunghir_UP.SG 0.293 0.355 -0.452 -0.538
  1163. Russia_Kostenki14.SG 0.455 0.691 -0.329 -0.234
  1164. Kazakhstan_Botai_Eneolithic.SG -0.284 2.627 -0.497 -1.331
  1165. Switzerland_Bichon.SG 1.078 0.203 -1.069 -0.954
  1166. Spain_HG.SG 0.947 0.371 -0.868 -0.828
  1167. A:
  1168. scale 2.000 2.000 2.000 2.000
  1169. Russia_MLBA_Sintashta 2.000 0.000 0.000 0.000
  1170. Russia_Tyumen_HG 0.000 2.000 0.000 0.000
  1171. Mongolia_North_N 0.000 0.000 2.000 0.000
  1172. Iran_C_TepeHissar 0.000 0.000 0.000 2.000
  1173.  
  1174.  
  1175. best coefficients: 0.474 0.132 0.319 0.075
  1176. Jackknife mean: 0.474004816 0.131551434 0.319146637 0.075297112
  1177. std. errors: 0.046 0.024 0.018 0.036
  1178.  
  1179. error covariance (* 1,000,000)
  1180. 2107 -656 -23 -1427
  1181. -656 568 -160 248
  1182. -23 -160 312 -129
  1183. -1427 248 -129 1309
  1184.  
  1185.  
  1186. summ: I7033 4 0.206338 0.474 0.132 0.319 0.075 2107 -656 -23-1427 568 ...
  1187. -160 248 312 -129 1309
  1188.  
  1189. fixed pat wt dof chisq tail prob
  1190. 0000 0 10 13.320 0.206338 0.474 0.132 0.319 0.075
  1191. 0001 1 11 18.857 0.0637011 0.555 0.121 0.323 0.000
  1192. 0010 1 11 307.668 0 0.471 0.325 0.000 0.204
  1193. 0100 1 11 43.848 7.72363e-06 0.624 0.000 0.355 0.020
  1194. 1000 1 11 115.968 1.17016e-19 0.000 0.284 0.318 0.398
  1195. 0011 2 12 331.795 0 0.718 0.282 0.000 0.000
  1196. 0101 2 12 43.453 1.89183e-05 0.643 0.000 0.357 0.000
  1197. 0110 2 12 457.112 0 0.966 0.000 0.000 0.034
  1198. 1001 2 12 446.201 0 0.000 0.581 0.419 0.000
  1199. 1010 2 12 372.641 0 0.000 0.492 0.000 0.508
  1200. 1100 2 12 298.053 0 0.000 0.000 0.442 0.558
  1201. 0111 3 13 458.042 0 1.000 0.000 0.000 0.000
  1202. 1011 3 13 728.385 0 0.000 1.000 0.000 0.000
  1203. 1101 3 13 1206.398 0 0.000 0.000 1.000 0.000
  1204. 1110 3 13 874.117 0 0.000 0.000 0.000 1.000
  1205. best pat: 0000 0.206338 - -
  1206. best pat: 0001 0.0637011 chi(nested): 5.538 p-value for nested model: 0.0186114
  1207. best pat: 0101 1.89183e-05 chi(nested): 24.596 p-value for nested model: 7.07097e-07
  1208. best pat: 0111 1.16963e-89 chi(nested): 414.589 p-value for nested model: 3.68385e-92
  1209.  
  1210. coeffs: 0.474 0.132 0.319 0.075
  1211.  
  1212. ## dscore:: f_4(Base, Fit, Rbase, right2)
  1213. ## genstat:: f_4(Base, Fit, right1, right2)
  1214.  
  1215. details: Russia_MLBA_Sintashta Turkey_N.SG 0.003029 8.441453
  1216. details: Russia_Tyumen_HG Turkey_N.SG -0.001284 -2.808586
  1217. details: Mongolia_North_N Turkey_N.SG -0.004650 -12.445238
  1218. details: Iran_C_TepeHissar Turkey_N.SG 0.000555 1.499847
  1219. dscore: Turkey_N.SG f4: -0.000175 Z: -0.517391
  1220.  
  1221. details: Russia_MLBA_Sintashta Italy_Mesolithic.SG 0.003385 8.071053
  1222. details: Russia_Tyumen_HG Italy_Mesolithic.SG 0.000782 1.442126
  1223. details: Mongolia_North_N Italy_Mesolithic.SG -0.004974 -11.077366
  1224. details: Iran_C_TepeHissar Italy_Mesolithic.SG -0.002993 -7.060077
  1225. dscore: Italy_Mesolithic.SG f4: -0.000106 Z: -0.261472
  1226.  
  1227. details: Russia_MLBA_Sintashta CHG 0.001920 5.086713
  1228. details: Russia_Tyumen_HG CHG -0.000102 -0.204320
  1229. details: Mongolia_North_N CHG -0.004450 -10.393669
  1230. details: Iran_C_TepeHissar CHG 0.001992 4.922735
  1231. dscore: CHG f4: -0.000373 Z: -1.011272
  1232.  
  1233. details: Russia_MLBA_Sintashta Iran_TepeAbdulHosein_N.SG 0.001162 3.350317
  1234. details: Russia_Tyumen_HG Iran_TepeAbdulHosein_N.SG 0.000303 0.661194
  1235. details: Mongolia_North_N Iran_TepeAbdulHosein_N.SG -0.003076 -8.075813
  1236. details: Iran_C_TepeHissar Iran_TepeAbdulHosein_N.SG 0.004031 10.661283
  1237. dscore: Iran_TepeAbdulHosein_N.SG f4: -0.000087 Z: -0.258902
  1238.  
  1239. details: Russia_MLBA_Sintashta Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.002204 5.001389
  1240. details: Russia_Tyumen_HG Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.007093 11.747901
  1241. details: Mongolia_North_N Russia_Arkhangelsk_Veretye_Mesolithic.SG -0.004181 -8.551476
  1242. details: Iran_C_TepeHissar Russia_Arkhangelsk_Veretye_Mesolithic.SG -0.003114 -6.528253
  1243. dscore: Russia_Arkhangelsk_Veretye_Mesolithic.SG f4: 0.000409 Z: 0.955017
  1244.  
  1245. details: Russia_MLBA_Sintashta Russia_DevilsCave_N.SG -0.004959 -12.622054
  1246. details: Russia_Tyumen_HG Russia_DevilsCave_N.SG -0.002315 -4.489061
  1247. details: Mongolia_North_N Russia_DevilsCave_N.SG 0.008962 20.564084
  1248. details: Iran_C_TepeHissar Russia_DevilsCave_N.SG -0.006459 -15.387970
  1249. dscore: Russia_DevilsCave_N.SG f4: -0.000281 Z: -0.739941
  1250.  
  1251. details: Russia_MLBA_Sintashta South_Africa_400BP.SG -0.000050 -0.228132
  1252. details: Russia_Tyumen_HG South_Africa_400BP.SG -0.000264 -0.885685
  1253. details: Mongolia_North_N South_Africa_400BP.SG -0.000195 -0.771275
  1254. details: Iran_C_TepeHissar South_Africa_400BP.SG -0.000043 -0.179594
  1255. dscore: South_Africa_400BP.SG f4: -0.000124 Z: -0.568864
  1256.  
  1257. details: Russia_MLBA_Sintashta Nepal_Mebrak_2125BP.SG -0.003990 -9.890035
  1258. details: Russia_Tyumen_HG Nepal_Mebrak_2125BP.SG -0.000382 -0.683876
  1259. details: Mongolia_North_N Nepal_Mebrak_2125BP.SG 0.008096 17.392151
  1260. details: Iran_C_TepeHissar Nepal_Mebrak_2125BP.SG -0.005190 -12.110721
  1261. dscore: Nepal_Mebrak_2125BP.SG f4: 0.000252 Z: 0.636557
  1262.  
  1263. details: Russia_MLBA_Sintashta Russia_Sunghir_UP.SG 0.000759 2.197539
  1264. details: Russia_Tyumen_HG Russia_Sunghir_UP.SG 0.001174 2.505633
  1265. details: Mongolia_North_N Russia_Sunghir_UP.SG -0.002151 -5.692784
  1266. details: Iran_C_TepeHissar Russia_Sunghir_UP.SG -0.001832 -4.996284
  1267. dscore: Russia_Sunghir_UP.SG f4: -0.000310 Z: -0.939632
  1268.  
  1269. details: Russia_MLBA_Sintashta Russia_Kostenki14.SG 0.001180 2.845170
  1270. details: Russia_Tyumen_HG Russia_Kostenki14.SG 0.002288 4.159614
  1271. details: Mongolia_North_N Russia_Kostenki14.SG -0.001567 -3.272014
  1272. details: Iran_C_TepeHissar Russia_Kostenki14.SG -0.000799 -1.844421
  1273. dscore: Russia_Kostenki14.SG f4: 0.000300 Z: 0.745751
  1274.  
  1275. details: Russia_MLBA_Sintashta Kazakhstan_Botai_Eneolithic.SG -0.000735 -2.042931
  1276. details: Russia_Tyumen_HG Kazakhstan_Botai_Eneolithic.SG 0.008693 17.863915
  1277. details: Mongolia_North_N Kazakhstan_Botai_Eneolithic.SG -0.002368 -5.930071
  1278. details: Iran_C_TepeHissar Kazakhstan_Botai_Eneolithic.SG -0.004535 -11.762236
  1279. dscore: Kazakhstan_Botai_Eneolithic.SG f4: -0.000302 Z: -0.867521
  1280.  
  1281. details: Russia_MLBA_Sintashta Switzerland_Bichon.SG 0.002796 6.471069
  1282. details: Russia_Tyumen_HG Switzerland_Bichon.SG 0.000672 1.134192
  1283. details: Mongolia_North_N Switzerland_Bichon.SG -0.005090 -10.445728
  1284. details: Iran_C_TepeHissar Switzerland_Bichon.SG -0.003251 -7.276985
  1285. dscore: Switzerland_Bichon.SG f4: -0.000456 Z: -1.082644
  1286.  
  1287. details: Russia_MLBA_Sintashta Spain_HG.SG 0.002456 6.281184
  1288. details: Russia_Tyumen_HG Spain_HG.SG 0.001227 2.462844
  1289. details: Mongolia_North_N Spain_HG.SG -0.004134 -10.184037
  1290. details: Iran_C_TepeHissar Spain_HG.SG -0.002823 -6.952677
  1291. dscore: Spain_HG.SG f4: -0.000207 Z: -0.557716
  1292.  
  1293. gendstat: Cameroon_SMA.SG Turkey_N.SG -0.517
  1294. gendstat: Cameroon_SMA.SG Italy_Mesolithic.SG -0.261
  1295. gendstat: Cameroon_SMA.SG CHG -1.011
  1296. gendstat: Cameroon_SMA.SG Iran_TepeAbdulHosein_N.SG -0.259
  1297. gendstat: Cameroon_SMA.SG Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.955
  1298. gendstat: Cameroon_SMA.SG Russia_DevilsCave_N.SG -0.740
  1299. gendstat: Cameroon_SMA.SG South_Africa_400BP.SG -0.569
  1300. gendstat: Cameroon_SMA.SG Nepal_Mebrak_2125BP.SG 0.637
  1301. gendstat: Cameroon_SMA.SG Russia_Sunghir_UP.SG -0.940
  1302. gendstat: Cameroon_SMA.SG Russia_Kostenki14.SG 0.746
  1303. gendstat: Cameroon_SMA.SG Kazakhstan_Botai_Eneolithic.SG -0.868
  1304. gendstat: Cameroon_SMA.SG Switzerland_Bichon.SG -1.083
  1305. gendstat: Cameroon_SMA.SG Spain_HG.SG -0.558
  1306. gendstat: Turkey_N.SG Italy_Mesolithic.SG 0.204
  1307. gendstat: Turkey_N.SG CHG -0.606
  1308. gendstat: Turkey_N.SG Iran_TepeAbdulHosein_N.SG 0.283
  1309. gendstat: Turkey_N.SG Russia_Arkhangelsk_Veretye_Mesolithic.SG 1.470
  1310. gendstat: Turkey_N.SG Russia_DevilsCave_N.SG -0.255
  1311. gendstat: Turkey_N.SG South_Africa_400BP.SG 0.164
  1312. gendstat: Turkey_N.SG Nepal_Mebrak_2125BP.SG 0.985
  1313. gendstat: Turkey_N.SG Russia_Sunghir_UP.SG -0.459
  1314. gendstat: Turkey_N.SG Russia_Kostenki14.SG 1.289
  1315. gendstat: Turkey_N.SG Kazakhstan_Botai_Eneolithic.SG -0.387
  1316. gendstat: Turkey_N.SG Switzerland_Bichon.SG -0.730
  1317. gendstat: Turkey_N.SG Spain_HG.SG -0.097
  1318. gendstat: Italy_Mesolithic.SG CHG -0.690
  1319. gendstat: Italy_Mesolithic.SG Iran_TepeAbdulHosein_N.SG 0.047
  1320. gendstat: Italy_Mesolithic.SG Russia_Arkhangelsk_Veretye_Mesolithic.SG 1.310
  1321. gendstat: Italy_Mesolithic.SG Russia_DevilsCave_N.SG -0.382
  1322. gendstat: Italy_Mesolithic.SG South_Africa_400BP.SG -0.047
  1323. gendstat: Italy_Mesolithic.SG Nepal_Mebrak_2125BP.SG 0.744
  1324. gendstat: Italy_Mesolithic.SG Russia_Sunghir_UP.SG -0.609
  1325. gendstat: Italy_Mesolithic.SG Russia_Kostenki14.SG 0.994
  1326. gendstat: Italy_Mesolithic.SG Kazakhstan_Botai_Eneolithic.SG -0.539
  1327. gendstat: Italy_Mesolithic.SG Switzerland_Bichon.SG -1.060
  1328. gendstat: Italy_Mesolithic.SG Spain_HG.SG -0.377
  1329. gendstat: CHG Iran_TepeAbdulHosein_N.SG 0.862
  1330. gendstat: CHG Russia_Arkhangelsk_Veretye_Mesolithic.SG 1.870
  1331. gendstat: CHG Russia_DevilsCave_N.SG 0.214
  1332. gendstat: CHG South_Africa_400BP.SG 0.732
  1333. gendstat: CHG Nepal_Mebrak_2125BP.SG 1.413
  1334. gendstat: CHG Russia_Sunghir_UP.SG 0.178
  1335. gendstat: CHG Russia_Kostenki14.SG 1.592
  1336. gendstat: CHG Kazakhstan_Botai_Eneolithic.SG 0.205
  1337. gendstat: CHG Switzerland_Bichon.SG -0.191
  1338. gendstat: CHG Spain_HG.SG 0.457
  1339. gendstat: Iran_TepeAbdulHosein_N.SG Russia_Arkhangelsk_Veretye_Mesolithic.SG 1.230
  1340. gendstat: Iran_TepeAbdulHosein_N.SG Russia_DevilsCave_N.SG -0.485
  1341. gendstat: Iran_TepeAbdulHosein_N.SG South_Africa_400BP.SG -0.116
  1342. gendstat: Iran_TepeAbdulHosein_N.SG Nepal_Mebrak_2125BP.SG 0.826
  1343. gendstat: Iran_TepeAbdulHosein_N.SG Russia_Sunghir_UP.SG -0.666
  1344. gendstat: Iran_TepeAbdulHosein_N.SG Russia_Kostenki14.SG 0.951
  1345. gendstat: Iran_TepeAbdulHosein_N.SG Kazakhstan_Botai_Eneolithic.SG -0.656
  1346. gendstat: Iran_TepeAbdulHosein_N.SG Switzerland_Bichon.SG -0.865
  1347. gendstat: Iran_TepeAbdulHosein_N.SG Spain_HG.SG -0.329
  1348. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Russia_DevilsCave_N.SG -1.464
  1349. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG South_Africa_400BP.SG -1.281
  1350. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Nepal_Mebrak_2125BP.SG -0.323
  1351. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Russia_Sunghir_UP.SG -1.820
  1352. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Russia_Kostenki14.SG -0.236
  1353. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Kazakhstan_Botai_Eneolithic.SG -2.010
  1354. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Switzerland_Bichon.SG -1.972
  1355. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Spain_HG.SG -1.587
  1356. gendstat: Russia_DevilsCave_N.SG South_Africa_400BP.SG 0.439
  1357. gendstat: Russia_DevilsCave_N.SG Nepal_Mebrak_2125BP.SG 1.544
  1358. gendstat: Russia_DevilsCave_N.SG Russia_Sunghir_UP.SG -0.074
  1359. gendstat: Russia_DevilsCave_N.SG Russia_Kostenki14.SG 1.345
  1360. gendstat: Russia_DevilsCave_N.SG Kazakhstan_Botai_Eneolithic.SG -0.053
  1361. gendstat: Russia_DevilsCave_N.SG Switzerland_Bichon.SG -0.362
  1362. gendstat: Russia_DevilsCave_N.SG Spain_HG.SG 0.176
  1363. gendstat: South_Africa_400BP.SG Nepal_Mebrak_2125BP.SG 1.001
  1364. gendstat: South_Africa_400BP.SG Russia_Sunghir_UP.SG -0.600
  1365. gendstat: South_Africa_400BP.SG Russia_Kostenki14.SG 1.084
  1366. gendstat: South_Africa_400BP.SG Kazakhstan_Botai_Eneolithic.SG -0.549
  1367. gendstat: South_Africa_400BP.SG Switzerland_Bichon.SG -0.813
  1368. gendstat: South_Africa_400BP.SG Spain_HG.SG -0.232
  1369. gendstat: Nepal_Mebrak_2125BP.SG Russia_Sunghir_UP.SG -1.343
  1370. gendstat: Nepal_Mebrak_2125BP.SG Russia_Kostenki14.SG 0.107
  1371. gendstat: Nepal_Mebrak_2125BP.SG Kazakhstan_Botai_Eneolithic.SG -1.363
  1372. gendstat: Nepal_Mebrak_2125BP.SG Switzerland_Bichon.SG -1.393
  1373. gendstat: Nepal_Mebrak_2125BP.SG Spain_HG.SG -1.021
  1374. gendstat: Russia_Sunghir_UP.SG Russia_Kostenki14.SG 1.795
  1375. gendstat: Russia_Sunghir_UP.SG Kazakhstan_Botai_Eneolithic.SG 0.027
  1376. gendstat: Russia_Sunghir_UP.SG Switzerland_Bichon.SG -0.380
  1377. gendstat: Russia_Sunghir_UP.SG Spain_HG.SG 0.346
  1378. gendstat: Russia_Kostenki14.SG Kazakhstan_Botai_Eneolithic.SG -1.547
  1379. gendstat: Russia_Kostenki14.SG Switzerland_Bichon.SG -1.680
  1380. gendstat: Russia_Kostenki14.SG Spain_HG.SG -1.316
  1381. gendstat: Kazakhstan_Botai_Eneolithic.SG Switzerland_Bichon.SG -0.379
  1382. gendstat: Kazakhstan_Botai_Eneolithic.SG Spain_HG.SG 0.294
  1383. gendstat: Switzerland_Bichon.SG Spain_HG.SG 0.769
  1384.  
  1385. worst Z-score with right hand mix
  1386. f4(Target, Fit, Base, mix of Right pops; Z: -3.543 sum: 1.000
  1387. Turkey_N.SG 0.052
  1388. Italy_Mesolithic.SG -0.564
  1389. CHG 1.297
  1390. Iran_TepeAbdulHosein_N.SG -0.362
  1391. Russia_Arkhangelsk_Veretye_Mesolithic.SG -2.377
  1392. Russia_DevilsCave_N.SG 1.450
  1393. South_Africa_400BP.SG 0.114
  1394. Nepal_Mebrak_2125BP.SG -1.624
  1395. Russia_Sunghir_UP.SG 1.799
  1396. Russia_Kostenki14.SG -1.974
  1397. Kazakhstan_Botai_Eneolithic.SG 1.909
  1398. Switzerland_Bichon.SG 1.450
  1399. Spain_HG.SG -0.169
  1400.  
  1401. oldmode set: terminating
  1402. ##end of qpAdm: 30.363 seconds cpu 1628.684 Mbytes in use
  1403. qpAdm: parameter file: I6363.qpAdm.par
  1404. ### THE INPUT PARAMETERS
  1405. ##PARAMETER NAME: VALUE
  1406. genotypename: v54.1_1240K.geno
  1407. snpname: v54.1_1240K.snp
  1408. indivname: v54.1_1240K.ind
  1409. popleft: I6363_leftlist.txt
  1410. popright: rightlist
  1411. details: YES
  1412. ## qpAdm -p I6363.qpAdm.par
  1413. ## qpAdm version: 2050
  1414. seed: 13963662
  1415. allsnps set NO. It is recommended that allsnps be set explicitly
  1416. *** recommended that inbreed be explicitly set ***
  1417. inbreed set NO
  1418. read 1073741824 bytes
  1419. read 2147483648 bytes
  1420. read 3221225472 bytes
  1421. read 3467232556 bytes
  1422. packed geno read OK
  1423. end of inpack
  1424.  
  1425. left pops:
  1426. I6363 1
  1427. Russia_MLBA_Sintashta 36
  1428. Russia_Tyumen_HG 1
  1429. Mongolia_North_N 5
  1430. Iran_C_TepeHissar 13
  1431.  
  1432. right pops:
  1433. Cameroon_SMA.SG 2
  1434. Turkey_N.SG 3
  1435. Italy_Mesolithic.SG 3
  1436. CHG 2
  1437. Iran_TepeAbdulHosein_N.SG 3
  1438. Russia_Arkhangelsk_Veretye_Mesolithic.SG 1
  1439. Russia_DevilsCave_N.SG 4
  1440. South_Africa_400BP.SG 4
  1441. Nepal_Mebrak_2125BP.SG 2
  1442. Russia_Sunghir_UP.SG 4
  1443. Russia_Kostenki14.SG 1
  1444. Kazakhstan_Botai_Eneolithic.SG 3
  1445. Switzerland_Bichon.SG 1
  1446. Spain_HG.SG 3
  1447.  
  1448. jackknife block size: 0.050
  1449. snps: 1150467 indivs: 92
  1450. number of blocks for block jackknife: 714
  1451. ## ncols: 1150467
  1452. coverage: I6363 814575
  1453. coverage: Russia_MLBA_Sintashta 1128313
  1454. coverage: Russia_Tyumen_HG 805560
  1455. coverage: Mongolia_North_N 1057835
  1456. coverage: Iran_C_TepeHissar 987000
  1457. coverage: Cameroon_SMA.SG 1148928
  1458. coverage: Turkey_N.SG 1150163
  1459. coverage: Italy_Mesolithic.SG 1141404
  1460. coverage: CHG 1147700
  1461. coverage: Iran_TepeAbdulHosein_N.SG 1061042
  1462. coverage: Russia_Arkhangelsk_Veretye_Mesolithic.SG 1088577
  1463. coverage: Russia_DevilsCave_N.SG 1148318
  1464. coverage: South_Africa_400BP.SG 1150181
  1465. coverage: Nepal_Mebrak_2125BP.SG 594658
  1466. coverage: Russia_Sunghir_UP.SG 1150000
  1467. coverage: Russia_Kostenki14.SG 1048972
  1468. coverage: Kazakhstan_Botai_Eneolithic.SG 1149621
  1469. coverage: Switzerland_Bichon.SG 1140092
  1470. coverage: Spain_HG.SG 1101680
  1471. Effective number of blocks: 631.447
  1472. numsnps used: 432607
  1473. codimension 1
  1474. f4info:
  1475. f4rank: 3 dof: 10 chisq: 7.398 tail: 0.68743295 dofdiff: 12 chisqdiff: -7.398 taildiff: 1
  1476. B:
  1477. scale 1.000 1.000 1.000
  1478. Turkey_N.SG 0.946 -0.373 1.067
  1479. Italy_Mesolithic.SG 1.024 0.737 1.500
  1480. CHG 0.861 -0.546 -0.159
  1481. Iran_TepeAbdulHosein_N.SG 0.647 -0.948 -1.031
  1482. Russia_Arkhangelsk_Veretye_Mesolithic.SG 1.019 1.597 -0.690
  1483. Russia_DevilsCave_N.SG -1.974 1.157 1.087
  1484. South_Africa_400BP.SG 0.015 -0.066 0.015
  1485. Nepal_Mebrak_2125BP.SG -1.659 1.166 0.538
  1486. Russia_Sunghir_UP.SG 0.396 0.491 0.254
  1487. Russia_Kostenki14.SG 0.403 0.445 -0.037
  1488. Kazakhstan_Botai_Eneolithic.SG 0.491 2.085 -1.952
  1489. Switzerland_Bichon.SG 0.975 0.737 1.329
  1490. Spain_HG.SG 0.835 0.735 0.967
  1491. A:
  1492. scale 357.119 514.587 1016.337
  1493. Russia_MLBA_Sintashta 0.903 -0.129 0.666
  1494. Russia_Tyumen_HG 0.523 1.230 -1.646
  1495. Mongolia_North_N -1.687 0.016 -0.053
  1496. Iran_C_TepeHissar 0.258 -1.572 -0.920
  1497.  
  1498.  
  1499. full rank
  1500. f4info:
  1501. f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 7.398 taildiff: 0.68743295
  1502. B:
  1503. scale 379.343 307.556 212.139 293.328
  1504. Turkey_N.SG 1.148 -0.420 -1.009 0.187
  1505. Italy_Mesolithic.SG 1.303 0.253 -1.046 -0.851
  1506. CHG 0.851 0.068 -0.867 0.702
  1507. Iran_TepeAbdulHosein_N.SG 0.449 0.093 -0.660 1.222
  1508. Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.761 2.101 -0.950 -0.970
  1509. Russia_DevilsCave_N.SG -1.737 -0.596 1.971 -1.762
  1510. South_Africa_400BP.SG 0.123 0.037 0.037 0.121
  1511. Nepal_Mebrak_2125BP.SG -1.716 -0.296 1.581 -1.670
  1512. Russia_Sunghir_UP.SG 0.405 0.429 -0.398 -0.435
  1513. Russia_Kostenki14.SG 0.244 0.451 -0.459 -0.392
  1514. Kazakhstan_Botai_Eneolithic.SG -0.248 2.697 -0.492 -1.298
  1515. Switzerland_Bichon.SG 1.165 0.267 -1.014 -0.859
  1516. Spain_HG.SG 0.929 0.392 -0.879 -0.798
  1517. A:
  1518. scale 2.000 2.000 2.000 2.000
  1519. Russia_MLBA_Sintashta 2.000 0.000 0.000 0.000
  1520. Russia_Tyumen_HG 0.000 2.000 0.000 0.000
  1521. Mongolia_North_N 0.000 0.000 2.000 0.000
  1522. Iran_C_TepeHissar 0.000 0.000 0.000 2.000
  1523.  
  1524.  
  1525. best coefficients: 0.475 0.141 0.310 0.074
  1526. Jackknife mean: 0.475256955 0.140734438 0.309543369 0.074465238
  1527. std. errors: 0.043 0.024 0.017 0.034
  1528.  
  1529. error covariance (* 1,000,000)
  1530. 1827 -592 -24 -1212
  1531. -592 579 -155 168
  1532. -24 -155 283 -104
  1533. -1212 168 -104 1149
  1534.  
  1535.  
  1536. summ: I6363 4 0.687433 0.475 0.141 0.310 0.074 1827 -592 -24-1212 579 ...
  1537. -155 168 283 -104 1149
  1538.  
  1539. fixed pat wt dof chisq tail prob
  1540. 0000 0 10 7.398 0.687433 0.475 0.141 0.310 0.074
  1541. 0001 1 11 11.540 0.399156 0.553 0.129 0.317 0.000
  1542. 0010 1 11 316.231 0 0.466 0.352 0.000 0.182
  1543. 0100 1 11 40.735 2.67676e-05 0.611 0.000 0.346 0.043
  1544. 1000 1 11 115.929 1.19145e-19 0.000 0.312 0.309 0.379
  1545. 0011 2 12 338.791 0 0.680 0.320 0.000 0.000
  1546. 0101 2 12 41.487 4.06164e-05 0.650 0.000 0.350 0.000
  1547. 0110 2 12 2366.413 0 -11.543 0.000 0.000 12.543 infeasible
  1548. 1001 2 12 436.246 0 0.000 0.614 0.386 0.000
  1549. 1010 2 12 381.904 0 0.000 0.552 0.000 0.448
  1550. 1100 2 12 318.374 0 0.000 0.000 0.439 0.561
  1551. 0111 3 13 483.384 0 1.000 0.000 0.000 0.000
  1552. 1011 3 13 677.937 0 0.000 1.000 0.000 0.000
  1553. 1101 3 13 1259.331 0 0.000 0.000 1.000 0.000
  1554. 1110 3 13 999.976 0 0.000 0.000 0.000 1.000
  1555. best pat: 0000 0.687433 - -
  1556. best pat: 0001 0.399156 chi(nested): 4.143 p-value for nested model: 0.0418151
  1557. best pat: 0101 4.06164e-05 chi(nested): 29.946 p-value for nested model: 4.44162e-08
  1558. best pat: 0111 4.93468e-95 chi(nested): 441.897 p-value for nested model: 4.19386e-98
  1559.  
  1560. coeffs: 0.475 0.141 0.310 0.074
  1561.  
  1562. ## dscore:: f_4(Base, Fit, Rbase, right2)
  1563. ## genstat:: f_4(Base, Fit, right1, right2)
  1564.  
  1565. details: Russia_MLBA_Sintashta Turkey_N.SG 0.003025 9.269029
  1566. details: Russia_Tyumen_HG Turkey_N.SG -0.001366 -3.135239
  1567. details: Mongolia_North_N Turkey_N.SG -0.004755 -13.065302
  1568. details: Iran_C_TepeHissar Turkey_N.SG 0.000638 1.832937
  1569. dscore: Turkey_N.SG f4: -0.000179 Z: -0.567533
  1570.  
  1571. details: Russia_MLBA_Sintashta Italy_Mesolithic.SG 0.003434 8.543383
  1572. details: Russia_Tyumen_HG Italy_Mesolithic.SG 0.000823 1.546212
  1573. details: Mongolia_North_N Italy_Mesolithic.SG -0.004928 -11.076406
  1574. details: Iran_C_TepeHissar Italy_Mesolithic.SG -0.002901 -7.032138
  1575. dscore: Italy_Mesolithic.SG f4: 0.000007 Z: 0.018764
  1576.  
  1577. details: Russia_MLBA_Sintashta CHG 0.002243 6.125881
  1578. details: Russia_Tyumen_HG CHG 0.000221 0.448285
  1579. details: Mongolia_North_N CHG -0.004089 -9.899725
  1580. details: Iran_C_TepeHissar CHG 0.002393 5.970821
  1581. dscore: CHG f4: 0.000010 Z: 0.027176
  1582.  
  1583. details: Russia_MLBA_Sintashta Iran_TepeAbdulHosein_N.SG 0.001183 3.624291
  1584. details: Russia_Tyumen_HG Iran_TepeAbdulHosein_N.SG 0.000303 0.657826
  1585. details: Mongolia_North_N Iran_TepeAbdulHosein_N.SG -0.003113 -8.342957
  1586. details: Iran_C_TepeHissar Iran_TepeAbdulHosein_N.SG 0.004168 11.914761
  1587. dscore: Iran_TepeAbdulHosein_N.SG f4: -0.000049 Z: -0.151599
  1588.  
  1589. details: Russia_MLBA_Sintashta Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.002006 4.666546
  1590. details: Russia_Tyumen_HG Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.006831 11.499955
  1591. details: Mongolia_North_N Russia_Arkhangelsk_Veretye_Mesolithic.SG -0.004476 -8.946878
  1592. details: Iran_C_TepeHissar Russia_Arkhangelsk_Veretye_Mesolithic.SG -0.003309 -7.065060
  1593. dscore: Russia_Arkhangelsk_Veretye_Mesolithic.SG f4: 0.000284 Z: 0.669281
  1594.  
  1595. details: Russia_MLBA_Sintashta Russia_DevilsCave_N.SG -0.004579 -12.655420
  1596. details: Russia_Tyumen_HG Russia_DevilsCave_N.SG -0.001937 -3.966700
  1597. details: Mongolia_North_N Russia_DevilsCave_N.SG 0.009292 22.008457
  1598. details: Iran_C_TepeHissar Russia_DevilsCave_N.SG -0.006007 -15.421898
  1599. dscore: Russia_DevilsCave_N.SG f4: -0.000020 Z: -0.055503
  1600.  
  1601. details: Russia_MLBA_Sintashta South_Africa_400BP.SG 0.000325 1.395516
  1602. details: Russia_Tyumen_HG South_Africa_400BP.SG 0.000120 0.404738
  1603. details: Mongolia_North_N South_Africa_400BP.SG 0.000174 0.686000
  1604. details: Iran_C_TepeHissar South_Africa_400BP.SG 0.000412 1.640224
  1605. dscore: South_Africa_400BP.SG f4: 0.000256 Z: 1.135521
  1606.  
  1607. details: Russia_MLBA_Sintashta Nepal_Mebrak_2125BP.SG -0.004523 -11.147008
  1608. details: Russia_Tyumen_HG Nepal_Mebrak_2125BP.SG -0.000963 -1.722664
  1609. details: Mongolia_North_N Nepal_Mebrak_2125BP.SG 0.007452 15.427652
  1610. details: Iran_C_TepeHissar Nepal_Mebrak_2125BP.SG -0.005695 -13.215102
  1611. dscore: Nepal_Mebrak_2125BP.SG f4: -0.000402 Z: -0.997194
  1612.  
  1613. details: Russia_MLBA_Sintashta Russia_Sunghir_UP.SG 0.001068 3.230360
  1614. details: Russia_Tyumen_HG Russia_Sunghir_UP.SG 0.001395 3.012092
  1615. details: Mongolia_North_N Russia_Sunghir_UP.SG -0.001876 -5.048796
  1616. details: Iran_C_TepeHissar Russia_Sunghir_UP.SG -0.001482 -4.155204
  1617. dscore: Russia_Sunghir_UP.SG f4: 0.000013 Z: 0.040927
  1618.  
  1619. details: Russia_MLBA_Sintashta Russia_Kostenki14.SG 0.000642 1.650023
  1620. details: Russia_Tyumen_HG Russia_Kostenki14.SG 0.001468 2.586015
  1621. details: Mongolia_North_N Russia_Kostenki14.SG -0.002164 -4.638908
  1622. details: Iran_C_TepeHissar Russia_Kostenki14.SG -0.001338 -3.156271
  1623. dscore: Russia_Kostenki14.SG f4: -0.000258 Z: -0.662669
  1624.  
  1625. details: Russia_MLBA_Sintashta Kazakhstan_Botai_Eneolithic.SG -0.000654 -1.942801
  1626. details: Russia_Tyumen_HG Kazakhstan_Botai_Eneolithic.SG 0.008770 18.408113
  1627. details: Mongolia_North_N Kazakhstan_Botai_Eneolithic.SG -0.002318 -5.685247
  1628. details: Iran_C_TepeHissar Kazakhstan_Botai_Eneolithic.SG -0.004425 -12.100864
  1629. dscore: Kazakhstan_Botai_Eneolithic.SG f4: -0.000123 Z: -0.367045
  1630.  
  1631. details: Russia_MLBA_Sintashta Switzerland_Bichon.SG 0.003070 6.995214
  1632. details: Russia_Tyumen_HG Switzerland_Bichon.SG 0.000867 1.453932
  1633. details: Mongolia_North_N Switzerland_Bichon.SG -0.004781 -9.852659
  1634. details: Iran_C_TepeHissar Switzerland_Bichon.SG -0.002929 -6.188310
  1635. dscore: Switzerland_Bichon.SG f4: -0.000116 Z: -0.272879
  1636.  
  1637. details: Russia_MLBA_Sintashta Spain_HG.SG 0.002448 6.943261
  1638. details: Russia_Tyumen_HG Spain_HG.SG 0.001276 2.581048
  1639. details: Mongolia_North_N Spain_HG.SG -0.004145 -10.242724
  1640. details: Iran_C_TepeHissar Spain_HG.SG -0.002721 -7.274976
  1641. dscore: Spain_HG.SG f4: -0.000142 Z: -0.407800
  1642.  
  1643. gendstat: Cameroon_SMA.SG Turkey_N.SG -0.568
  1644. gendstat: Cameroon_SMA.SG Italy_Mesolithic.SG 0.019
  1645. gendstat: Cameroon_SMA.SG CHG 0.027
  1646. gendstat: Cameroon_SMA.SG Iran_TepeAbdulHosein_N.SG -0.152
  1647. gendstat: Cameroon_SMA.SG Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.669
  1648. gendstat: Cameroon_SMA.SG Russia_DevilsCave_N.SG -0.056
  1649. gendstat: Cameroon_SMA.SG South_Africa_400BP.SG 1.136
  1650. gendstat: Cameroon_SMA.SG Nepal_Mebrak_2125BP.SG -0.997
  1651. gendstat: Cameroon_SMA.SG Russia_Sunghir_UP.SG 0.041
  1652. gendstat: Cameroon_SMA.SG Russia_Kostenki14.SG -0.663
  1653. gendstat: Cameroon_SMA.SG Kazakhstan_Botai_Eneolithic.SG -0.367
  1654. gendstat: Cameroon_SMA.SG Switzerland_Bichon.SG -0.273
  1655. gendstat: Cameroon_SMA.SG Spain_HG.SG -0.408
  1656. gendstat: Turkey_N.SG Italy_Mesolithic.SG 0.557
  1657. gendstat: Turkey_N.SG CHG 0.576
  1658. gendstat: Turkey_N.SG Iran_TepeAbdulHosein_N.SG 0.439
  1659. gendstat: Turkey_N.SG Russia_Arkhangelsk_Veretye_Mesolithic.SG 1.152
  1660. gendstat: Turkey_N.SG Russia_DevilsCave_N.SG 0.423
  1661. gendstat: Turkey_N.SG South_Africa_400BP.SG 1.470
  1662. gendstat: Turkey_N.SG Nepal_Mebrak_2125BP.SG -0.515
  1663. gendstat: Turkey_N.SG Russia_Sunghir_UP.SG 0.649
  1664. gendstat: Turkey_N.SG Russia_Kostenki14.SG -0.210
  1665. gendstat: Turkey_N.SG Kazakhstan_Botai_Eneolithic.SG 0.166
  1666. gendstat: Turkey_N.SG Switzerland_Bichon.SG 0.157
  1667. gendstat: Turkey_N.SG Spain_HG.SG 0.118
  1668. gendstat: Italy_Mesolithic.SG CHG 0.006
  1669. gendstat: Italy_Mesolithic.SG Iran_TepeAbdulHosein_N.SG -0.152
  1670. gendstat: Italy_Mesolithic.SG Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.679
  1671. gendstat: Italy_Mesolithic.SG Russia_DevilsCave_N.SG -0.060
  1672. gendstat: Italy_Mesolithic.SG South_Africa_400BP.SG 0.666
  1673. gendstat: Italy_Mesolithic.SG Nepal_Mebrak_2125BP.SG -0.825
  1674. gendstat: Italy_Mesolithic.SG Russia_Sunghir_UP.SG 0.017
  1675. gendstat: Italy_Mesolithic.SG Russia_Kostenki14.SG -0.640
  1676. gendstat: Italy_Mesolithic.SG Kazakhstan_Botai_Eneolithic.SG -0.351
  1677. gendstat: Italy_Mesolithic.SG Switzerland_Bichon.SG -0.389
  1678. gendstat: Italy_Mesolithic.SG Spain_HG.SG -0.558
  1679. gendstat: CHG Iran_TepeAbdulHosein_N.SG -0.174
  1680. gendstat: CHG Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.655
  1681. gendstat: CHG Russia_DevilsCave_N.SG -0.069
  1682. gendstat: CHG South_Africa_400BP.SG 0.711
  1683. gendstat: CHG Nepal_Mebrak_2125BP.SG -0.862
  1684. gendstat: CHG Russia_Sunghir_UP.SG 0.010
  1685. gendstat: CHG Russia_Kostenki14.SG -0.657
  1686. gendstat: CHG Kazakhstan_Botai_Eneolithic.SG -0.351
  1687. gendstat: CHG Switzerland_Bichon.SG -0.286
  1688. gendstat: CHG Spain_HG.SG -0.406
  1689. gendstat: Iran_TepeAbdulHosein_N.SG Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.822
  1690. gendstat: Iran_TepeAbdulHosein_N.SG Russia_DevilsCave_N.SG 0.077
  1691. gendstat: Iran_TepeAbdulHosein_N.SG South_Africa_400BP.SG 1.026
  1692. gendstat: Iran_TepeAbdulHosein_N.SG Nepal_Mebrak_2125BP.SG -0.823
  1693. gendstat: Iran_TepeAbdulHosein_N.SG Russia_Sunghir_UP.SG 0.196
  1694. gendstat: Iran_TepeAbdulHosein_N.SG Russia_Kostenki14.SG -0.535
  1695. gendstat: Iran_TepeAbdulHosein_N.SG Kazakhstan_Botai_Eneolithic.SG -0.215
  1696. gendstat: Iran_TepeAbdulHosein_N.SG Switzerland_Bichon.SG -0.154
  1697. gendstat: Iran_TepeAbdulHosein_N.SG Spain_HG.SG -0.269
  1698. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Russia_DevilsCave_N.SG -0.653
  1699. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG South_Africa_400BP.SG -0.068
  1700. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Nepal_Mebrak_2125BP.SG -1.343
  1701. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Russia_Sunghir_UP.SG -0.681
  1702. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Russia_Kostenki14.SG -1.171
  1703. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Kazakhstan_Botai_Eneolithic.SG -1.087
  1704. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Switzerland_Bichon.SG -0.888
  1705. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Spain_HG.SG -1.093
  1706. gendstat: Russia_DevilsCave_N.SG South_Africa_400BP.SG 0.782
  1707. gendstat: Russia_DevilsCave_N.SG Nepal_Mebrak_2125BP.SG -1.022
  1708. gendstat: Russia_DevilsCave_N.SG Russia_Sunghir_UP.SG 0.088
  1709. gendstat: Russia_DevilsCave_N.SG Russia_Kostenki14.SG -0.553
  1710. gendstat: Russia_DevilsCave_N.SG Kazakhstan_Botai_Eneolithic.SG -0.276
  1711. gendstat: Russia_DevilsCave_N.SG Switzerland_Bichon.SG -0.195
  1712. gendstat: Russia_DevilsCave_N.SG Spain_HG.SG -0.291
  1713. gendstat: South_Africa_400BP.SG Nepal_Mebrak_2125BP.SG -1.638
  1714. gendstat: South_Africa_400BP.SG Russia_Sunghir_UP.SG -0.774
  1715. gendstat: South_Africa_400BP.SG Russia_Kostenki14.SG -1.348
  1716. gendstat: South_Africa_400BP.SG Kazakhstan_Botai_Eneolithic.SG -1.129
  1717. gendstat: South_Africa_400BP.SG Switzerland_Bichon.SG -0.869
  1718. gendstat: South_Africa_400BP.SG Spain_HG.SG -1.185
  1719. gendstat: Nepal_Mebrak_2125BP.SG Russia_Sunghir_UP.SG 0.999
  1720. gendstat: Nepal_Mebrak_2125BP.SG Russia_Kostenki14.SG 0.299
  1721. gendstat: Nepal_Mebrak_2125BP.SG Kazakhstan_Botai_Eneolithic.SG 0.650
  1722. gendstat: Nepal_Mebrak_2125BP.SG Switzerland_Bichon.SG 0.536
  1723. gendstat: Nepal_Mebrak_2125BP.SG Spain_HG.SG 0.565
  1724. gendstat: Russia_Sunghir_UP.SG Russia_Kostenki14.SG -0.758
  1725. gendstat: Russia_Sunghir_UP.SG Kazakhstan_Botai_Eneolithic.SG -0.425
  1726. gendstat: Russia_Sunghir_UP.SG Switzerland_Bichon.SG -0.324
  1727. gendstat: Russia_Sunghir_UP.SG Spain_HG.SG -0.492
  1728. gendstat: Russia_Kostenki14.SG Kazakhstan_Botai_Eneolithic.SG 0.333
  1729. gendstat: Russia_Kostenki14.SG Switzerland_Bichon.SG 0.309
  1730. gendstat: Russia_Kostenki14.SG Spain_HG.SG 0.298
  1731. gendstat: Kazakhstan_Botai_Eneolithic.SG Switzerland_Bichon.SG 0.016
  1732. gendstat: Kazakhstan_Botai_Eneolithic.SG Spain_HG.SG -0.055
  1733. gendstat: Switzerland_Bichon.SG Spain_HG.SG -0.076
  1734.  
  1735. worst Z-score with right hand mix
  1736. f4(Target, Fit, Base, mix of Right pops; Z: 2.575 sum: 1.000
  1737. Turkey_N.SG -1.831
  1738. Italy_Mesolithic.SG 0.895
  1739. CHG 0.195
  1740. Iran_TepeAbdulHosein_N.SG -0.521
  1741. Russia_Arkhangelsk_Veretye_Mesolithic.SG 1.586
  1742. Russia_DevilsCave_N.SG 0.804
  1743. South_Africa_400BP.SG 4.150
  1744. Nepal_Mebrak_2125BP.SG -1.768
  1745. Russia_Sunghir_UP.SG 1.256
  1746. Russia_Kostenki14.SG -1.176
  1747. Kazakhstan_Botai_Eneolithic.SG -0.990
  1748. Switzerland_Bichon.SG -0.384
  1749. Spain_HG.SG -1.216
  1750.  
  1751. oldmode set: terminating
  1752. ##end of qpAdm: 35.661 seconds cpu 1628.684 Mbytes in use
  1753. qpAdm: parameter file: I6362.qpAdm.par
  1754. ### THE INPUT PARAMETERS
  1755. ##PARAMETER NAME: VALUE
  1756. genotypename: v54.1_1240K.geno
  1757. snpname: v54.1_1240K.snp
  1758. indivname: v54.1_1240K.ind
  1759. popleft: I6362_leftlist.txt
  1760. popright: rightlist
  1761. details: YES
  1762. ## qpAdm -p I6362.qpAdm.par
  1763. ## qpAdm version: 2050
  1764. seed: 16326283
  1765. allsnps set NO. It is recommended that allsnps be set explicitly
  1766. *** recommended that inbreed be explicitly set ***
  1767. inbreed set NO
  1768. read 1073741824 bytes
  1769. read 2147483648 bytes
  1770. read 3221225472 bytes
  1771. read 3467232556 bytes
  1772. packed geno read OK
  1773. end of inpack
  1774.  
  1775. left pops:
  1776. I6362 1
  1777. Russia_MLBA_Sintashta 36
  1778. Russia_Tyumen_HG 1
  1779. Mongolia_North_N 5
  1780. Iran_C_TepeHissar 13
  1781.  
  1782. right pops:
  1783. Cameroon_SMA.SG 2
  1784. Turkey_N.SG 3
  1785. Italy_Mesolithic.SG 3
  1786. CHG 2
  1787. Iran_TepeAbdulHosein_N.SG 3
  1788. Russia_Arkhangelsk_Veretye_Mesolithic.SG 1
  1789. Russia_DevilsCave_N.SG 4
  1790. South_Africa_400BP.SG 4
  1791. Nepal_Mebrak_2125BP.SG 2
  1792. Russia_Sunghir_UP.SG 4
  1793. Russia_Kostenki14.SG 1
  1794. Kazakhstan_Botai_Eneolithic.SG 3
  1795. Switzerland_Bichon.SG 1
  1796. Spain_HG.SG 3
  1797.  
  1798. jackknife block size: 0.050
  1799. snps: 1150466 indivs: 92
  1800. number of blocks for block jackknife: 714
  1801. ## ncols: 1150466
  1802. coverage: I6362 871688
  1803. coverage: Russia_MLBA_Sintashta 1128313
  1804. coverage: Russia_Tyumen_HG 805560
  1805. coverage: Mongolia_North_N 1057835
  1806. coverage: Iran_C_TepeHissar 987000
  1807. coverage: Cameroon_SMA.SG 1148928
  1808. coverage: Turkey_N.SG 1150163
  1809. coverage: Italy_Mesolithic.SG 1141404
  1810. coverage: CHG 1147700
  1811. coverage: Iran_TepeAbdulHosein_N.SG 1061042
  1812. coverage: Russia_Arkhangelsk_Veretye_Mesolithic.SG 1088577
  1813. coverage: Russia_DevilsCave_N.SG 1148318
  1814. coverage: South_Africa_400BP.SG 1150181
  1815. coverage: Nepal_Mebrak_2125BP.SG 594658
  1816. coverage: Russia_Sunghir_UP.SG 1150000
  1817. coverage: Russia_Kostenki14.SG 1048972
  1818. coverage: Kazakhstan_Botai_Eneolithic.SG 1149621
  1819. coverage: Switzerland_Bichon.SG 1140092
  1820. coverage: Spain_HG.SG 1101680
  1821. Effective number of blocks: 630.848
  1822. numsnps used: 435097
  1823. codimension 1
  1824. f4info:
  1825. f4rank: 3 dof: 10 chisq: 21.768 tail: 0.0163290478 dofdiff: 12 chisqdiff: -21.768 taildiff: 1
  1826. B:
  1827. scale 1.000 1.000 1.000
  1828. Turkey_N.SG 0.936 -0.320 1.009
  1829. Italy_Mesolithic.SG 1.012 0.768 1.509
  1830. CHG 0.864 -0.536 -0.167
  1831. Iran_TepeAbdulHosein_N.SG 0.651 -0.890 -1.005
  1832. Russia_Arkhangelsk_Veretye_Mesolithic.SG 1.006 1.614 -0.743
  1833. Russia_DevilsCave_N.SG -2.000 1.133 1.103
  1834. South_Africa_400BP.SG -0.000 -0.056 0.047
  1835. Nepal_Mebrak_2125BP.SG -1.677 1.135 0.581
  1836. Russia_Sunghir_UP.SG 0.393 0.513 0.243
  1837. Russia_Kostenki14.SG 0.373 0.438 -0.057
  1838. Kazakhstan_Botai_Eneolithic.SG 0.473 2.105 -1.937
  1839. Switzerland_Bichon.SG 0.956 0.761 1.330
  1840. Spain_HG.SG 0.821 0.762 0.986
  1841. A:
  1842. scale 358.456 522.590 999.628
  1843. Russia_MLBA_Sintashta 0.942 -0.113 0.633
  1844. Russia_Tyumen_HG 0.540 1.242 -1.659
  1845. Mongolia_North_N -1.651 0.007 -0.105
  1846. Iran_C_TepeHissar 0.307 -1.564 -0.916
  1847.  
  1848.  
  1849. full rank
  1850. f4info:
  1851. f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 21.768 taildiff: 0.0163290478
  1852. B:
  1853. scale 369.699 307.377 215.695 289.873
  1854. Turkey_N.SG 0.939 -0.532 -1.099 0.040
  1855. Italy_Mesolithic.SG 1.264 0.251 -1.054 -0.862
  1856. CHG 0.886 0.090 -0.832 0.716
  1857. Iran_TepeAbdulHosein_N.SG 0.299 -0.013 -0.743 1.038
  1858. Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.609 1.995 -1.014 -1.037
  1859. Russia_DevilsCave_N.SG -1.854 -0.736 1.932 -1.866
  1860. South_Africa_400BP.SG 0.120 0.018 0.049 0.097
  1861. Nepal_Mebrak_2125BP.SG -1.754 -0.376 1.571 -1.717
  1862. Russia_Sunghir_UP.SG 0.501 0.512 -0.344 -0.363
  1863. Russia_Kostenki14.SG 0.366 0.608 -0.359 -0.265
  1864. Kazakhstan_Botai_Eneolithic.SG -0.265 2.665 -0.500 -1.301
  1865. Switzerland_Bichon.SG 1.194 0.312 -0.978 -0.803
  1866. Spain_HG.SG 0.931 0.383 -0.867 -0.780
  1867. A:
  1868. scale 2.000 2.000 2.000 2.000
  1869. Russia_MLBA_Sintashta 2.000 0.000 0.000 0.000
  1870. Russia_Tyumen_HG 0.000 2.000 0.000 0.000
  1871. Mongolia_North_N 0.000 0.000 2.000 0.000
  1872. Iran_C_TepeHissar 0.000 0.000 0.000 2.000
  1873.  
  1874.  
  1875. best coefficients: 0.480 0.126 0.327 0.067
  1876. Jackknife mean: 0.480191532 0.125789558 0.327352788 0.066666123
  1877. std. errors: 0.043 0.026 0.018 0.034
  1878.  
  1879. error covariance (* 1,000,000)
  1880. 1829 -674 40 -1195
  1881. -674 664 -199 209
  1882. 40 -199 322 -164
  1883. -1195 209 -164 1150
  1884.  
  1885.  
  1886. summ: I6362 4 0.016329 0.480 0.126 0.327 0.067 1829 -674 40-1195 664 ...
  1887. -199 209 322 -164 1150
  1888.  
  1889. fixed pat wt dof chisq tail prob
  1890. 0000 0 10 21.768 0.016329 0.480 0.126 0.327 0.067
  1891. 0001 1 11 26.258 0.0059391 0.550 0.115 0.335 0.000
  1892. 0010 1 11 320.596 0 0.412 0.374 0.000 0.214
  1893. 0100 1 11 45.972 3.26957e-06 0.607 0.000 0.365 0.028
  1894. 1000 1 11 134.384 2.25205e-23 0.000 0.305 0.320 0.375
  1895. 0011 2 12 356.218 0 0.648 0.352 0.000 0.000
  1896. 0101 2 12 46.331 6.08277e-06 0.634 0.000 0.366 0.000
  1897. 0110 2 12 508.057 0 0.882 0.000 0.000 0.118
  1898. 1001 2 12 423.395 0 0.000 0.584 0.416 0.000
  1899. 1010 2 12 380.006 0 0.000 0.540 0.000 0.460
  1900. 1100 2 12 338.953 0 0.000 0.000 0.459 0.541
  1901. 0111 3 13 518.888 0 1.000 0.000 0.000 0.000
  1902. 1011 3 13 693.387 0 0.000 1.000 0.000 0.000
  1903. 1101 3 13 1221.351 0 0.000 0.000 1.000 0.000
  1904. 1110 3 13 1077.968 0 0.000 0.000 0.000 1.000
  1905. best pat: 0000 0.016329 - -
  1906. best pat: 0001 0.0059391 chi(nested): 4.490 p-value for nested model: 0.0340941
  1907. best pat: 0101 6.08277e-06 chi(nested): 20.072 p-value for nested model: 7.45702e-06
  1908. best pat: 0111 1.41955e-102 chi(nested): 472.558 p-value for nested model: 8.91536e-105
  1909.  
  1910. coeffs: 0.480 0.126 0.327 0.067
  1911.  
  1912. ## dscore:: f_4(Base, Fit, Rbase, right2)
  1913. ## genstat:: f_4(Base, Fit, right1, right2)
  1914.  
  1915. details: Russia_MLBA_Sintashta Turkey_N.SG 0.002539 7.476793
  1916. details: Russia_Tyumen_HG Turkey_N.SG -0.001731 -3.858273
  1917. details: Mongolia_North_N Turkey_N.SG -0.005094 -13.961972
  1918. details: Iran_C_TepeHissar Turkey_N.SG 0.000138 0.394032
  1919. dscore: Turkey_N.SG f4: -0.000657 Z: -2.028880
  1920.  
  1921. details: Russia_MLBA_Sintashta Italy_Mesolithic.SG 0.003419 8.892865
  1922. details: Russia_Tyumen_HG Italy_Mesolithic.SG 0.000816 1.624290
  1923. details: Mongolia_North_N Italy_Mesolithic.SG -0.004885 -11.755767
  1924. details: Iran_C_TepeHissar Italy_Mesolithic.SG -0.002975 -7.434225
  1925. dscore: Italy_Mesolithic.SG f4: -0.000052 Z: -0.142942
  1926.  
  1927. details: Russia_MLBA_Sintashta CHG 0.002396 6.513710
  1928. details: Russia_Tyumen_HG CHG 0.000294 0.584627
  1929. details: Mongolia_North_N CHG -0.003859 -9.609262
  1930. details: Iran_C_TepeHissar CHG 0.002469 6.463349
  1931. dscore: CHG f4: 0.000089 Z: 0.252344
  1932.  
  1933. details: Russia_MLBA_Sintashta Iran_TepeAbdulHosein_N.SG 0.000810 2.384877
  1934. details: Russia_Tyumen_HG Iran_TepeAbdulHosein_N.SG -0.000044 -0.094070
  1935. details: Mongolia_North_N Iran_TepeAbdulHosein_N.SG -0.003445 -9.471759
  1936. details: Iran_C_TepeHissar Iran_TepeAbdulHosein_N.SG 0.003579 9.902536
  1937. dscore: Iran_TepeAbdulHosein_N.SG f4: -0.000506 Z: -1.542572
  1938.  
  1939. details: Russia_MLBA_Sintashta Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.001646 3.650481
  1940. details: Russia_Tyumen_HG Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.006491 10.851950
  1941. details: Mongolia_North_N Russia_Arkhangelsk_Veretye_Mesolithic.SG -0.004703 -9.419106
  1942. details: Iran_C_TepeHissar Russia_Arkhangelsk_Veretye_Mesolithic.SG -0.003578 -7.559312
  1943. dscore: Russia_Arkhangelsk_Veretye_Mesolithic.SG f4: -0.000171 Z: -0.392188
  1944.  
  1945. details: Russia_MLBA_Sintashta Russia_DevilsCave_N.SG -0.005015 -13.502857
  1946. details: Russia_Tyumen_HG Russia_DevilsCave_N.SG -0.002396 -4.621802
  1947. details: Mongolia_North_N Russia_DevilsCave_N.SG 0.008957 21.171713
  1948. details: Iran_C_TepeHissar Russia_DevilsCave_N.SG -0.006438 -16.449495
  1949. dscore: Russia_DevilsCave_N.SG f4: -0.000207 Z: -0.568341
  1950.  
  1951. details: Russia_MLBA_Sintashta South_Africa_400BP.SG 0.000323 1.385256
  1952. details: Russia_Tyumen_HG South_Africa_400BP.SG 0.000058 0.201334
  1953. details: Mongolia_North_N South_Africa_400BP.SG 0.000229 0.916546
  1954. details: Iran_C_TepeHissar South_Africa_400BP.SG 0.000334 1.354010
  1955. dscore: South_Africa_400BP.SG f4: 0.000260 Z: 1.165173
  1956.  
  1957. details: Russia_MLBA_Sintashta Nepal_Mebrak_2125BP.SG -0.004745 -11.368611
  1958. details: Russia_Tyumen_HG Nepal_Mebrak_2125BP.SG -0.001224 -2.208913
  1959. details: Mongolia_North_N Nepal_Mebrak_2125BP.SG 0.007284 15.584286
  1960. details: Iran_C_TepeHissar Nepal_Mebrak_2125BP.SG -0.005925 -13.843780
  1961. dscore: Nepal_Mebrak_2125BP.SG f4: -0.000443 Z: -1.100619
  1962.  
  1963. details: Russia_MLBA_Sintashta Russia_Sunghir_UP.SG 0.001354 4.130943
  1964. details: Russia_Tyumen_HG Russia_Sunghir_UP.SG 0.001667 3.589357
  1965. details: Mongolia_North_N Russia_Sunghir_UP.SG -0.001593 -4.180447
  1966. details: Iran_C_TepeHissar Russia_Sunghir_UP.SG -0.001254 -3.578748
  1967. dscore: Russia_Sunghir_UP.SG f4: 0.000255 Z: 0.792561
  1968.  
  1969. details: Russia_MLBA_Sintashta Russia_Kostenki14.SG 0.000991 2.412514
  1970. details: Russia_Tyumen_HG Russia_Kostenki14.SG 0.001979 3.483294
  1971. details: Mongolia_North_N Russia_Kostenki14.SG -0.001663 -3.524528
  1972. details: Iran_C_TepeHissar Russia_Kostenki14.SG -0.000916 -2.166841
  1973. dscore: Russia_Kostenki14.SG f4: 0.000120 Z: 0.298967
  1974.  
  1975. details: Russia_MLBA_Sintashta Kazakhstan_Botai_Eneolithic.SG -0.000716 -2.014430
  1976. details: Russia_Tyumen_HG Kazakhstan_Botai_Eneolithic.SG 0.008672 17.779711
  1977. details: Mongolia_North_N Kazakhstan_Botai_Eneolithic.SG -0.002318 -5.779388
  1978. details: Iran_C_TepeHissar Kazakhstan_Botai_Eneolithic.SG -0.004490 -12.268221
  1979. dscore: Kazakhstan_Botai_Eneolithic.SG f4: -0.000311 Z: -0.900914
  1980.  
  1981. details: Russia_MLBA_Sintashta Switzerland_Bichon.SG 0.003229 7.345744
  1982. details: Russia_Tyumen_HG Switzerland_Bichon.SG 0.001014 1.737786
  1983. details: Mongolia_North_N Switzerland_Bichon.SG -0.004533 -9.554305
  1984. details: Iran_C_TepeHissar Switzerland_Bichon.SG -0.002769 -6.017189
  1985. dscore: Switzerland_Bichon.SG f4: 0.000010 Z: 0.023656
  1986.  
  1987. details: Russia_MLBA_Sintashta Spain_HG.SG 0.002519 6.927950
  1988. details: Russia_Tyumen_HG Spain_HG.SG 0.001247 2.620416
  1989. details: Mongolia_North_N Spain_HG.SG -0.004020 -10.234973
  1990. details: Iran_C_TepeHissar Spain_HG.SG -0.002691 -7.180952
  1991. dscore: Spain_HG.SG f4: -0.000128 Z: -0.370961
  1992.  
  1993. gendstat: Cameroon_SMA.SG Turkey_N.SG -2.029
  1994. gendstat: Cameroon_SMA.SG Italy_Mesolithic.SG -0.143
  1995. gendstat: Cameroon_SMA.SG CHG 0.252
  1996. gendstat: Cameroon_SMA.SG Iran_TepeAbdulHosein_N.SG -1.543
  1997. gendstat: Cameroon_SMA.SG Russia_Arkhangelsk_Veretye_Mesolithic.SG -0.392
  1998. gendstat: Cameroon_SMA.SG Russia_DevilsCave_N.SG -0.568
  1999. gendstat: Cameroon_SMA.SG South_Africa_400BP.SG 1.165
  2000. gendstat: Cameroon_SMA.SG Nepal_Mebrak_2125BP.SG -1.101
  2001. gendstat: Cameroon_SMA.SG Russia_Sunghir_UP.SG 0.793
  2002. gendstat: Cameroon_SMA.SG Russia_Kostenki14.SG 0.299
  2003. gendstat: Cameroon_SMA.SG Kazakhstan_Botai_Eneolithic.SG -0.901
  2004. gendstat: Cameroon_SMA.SG Switzerland_Bichon.SG 0.024
  2005. gendstat: Cameroon_SMA.SG Spain_HG.SG -0.371
  2006. gendstat: Turkey_N.SG Italy_Mesolithic.SG 1.876
  2007. gendstat: Turkey_N.SG CHG 2.322
  2008. gendstat: Turkey_N.SG Iran_TepeAbdulHosein_N.SG 0.502
  2009. gendstat: Turkey_N.SG Russia_Arkhangelsk_Veretye_Mesolithic.SG 1.203
  2010. gendstat: Turkey_N.SG Russia_DevilsCave_N.SG 1.110
  2011. gendstat: Turkey_N.SG South_Africa_400BP.SG 3.035
  2012. gendstat: Turkey_N.SG Nepal_Mebrak_2125BP.SG 0.483
  2013. gendstat: Turkey_N.SG Russia_Sunghir_UP.SG 3.087
  2014. gendstat: Turkey_N.SG Russia_Kostenki14.SG 2.005
  2015. gendstat: Turkey_N.SG Kazakhstan_Botai_Eneolithic.SG 1.025
  2016. gendstat: Turkey_N.SG Switzerland_Bichon.SG 1.769
  2017. gendstat: Turkey_N.SG Spain_HG.SG 1.704
  2018. gendstat: Italy_Mesolithic.SG CHG 0.385
  2019. gendstat: Italy_Mesolithic.SG Iran_TepeAbdulHosein_N.SG -1.280
  2020. gendstat: Italy_Mesolithic.SG Russia_Arkhangelsk_Veretye_Mesolithic.SG -0.292
  2021. gendstat: Italy_Mesolithic.SG Russia_DevilsCave_N.SG -0.358
  2022. gendstat: Italy_Mesolithic.SG South_Africa_400BP.SG 0.900
  2023. gendstat: Italy_Mesolithic.SG Nepal_Mebrak_2125BP.SG -0.852
  2024. gendstat: Italy_Mesolithic.SG Russia_Sunghir_UP.SG 0.938
  2025. gendstat: Italy_Mesolithic.SG Russia_Kostenki14.SG 0.434
  2026. gendstat: Italy_Mesolithic.SG Kazakhstan_Botai_Eneolithic.SG -0.714
  2027. gendstat: Italy_Mesolithic.SG Switzerland_Bichon.SG 0.191
  2028. gendstat: Italy_Mesolithic.SG Spain_HG.SG -0.288
  2029. gendstat: CHG Iran_TepeAbdulHosein_N.SG -1.782
  2030. gendstat: CHG Russia_Arkhangelsk_Veretye_Mesolithic.SG -0.601
  2031. gendstat: CHG Russia_DevilsCave_N.SG -0.707
  2032. gendstat: CHG South_Africa_400BP.SG 0.486
  2033. gendstat: CHG Nepal_Mebrak_2125BP.SG -1.169
  2034. gendstat: CHG Russia_Sunghir_UP.SG 0.488
  2035. gendstat: CHG Russia_Kostenki14.SG 0.074
  2036. gendstat: CHG Kazakhstan_Botai_Eneolithic.SG -1.127
  2037. gendstat: CHG Switzerland_Bichon.SG -0.191
  2038. gendstat: CHG Spain_HG.SG -0.617
  2039. gendstat: Iran_TepeAbdulHosein_N.SG Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.789
  2040. gendstat: Iran_TepeAbdulHosein_N.SG Russia_DevilsCave_N.SG 0.753
  2041. gendstat: Iran_TepeAbdulHosein_N.SG South_Africa_400BP.SG 2.442
  2042. gendstat: Iran_TepeAbdulHosein_N.SG Nepal_Mebrak_2125BP.SG 0.147
  2043. gendstat: Iran_TepeAbdulHosein_N.SG Russia_Sunghir_UP.SG 2.298
  2044. gendstat: Iran_TepeAbdulHosein_N.SG Russia_Kostenki14.SG 1.542
  2045. gendstat: Iran_TepeAbdulHosein_N.SG Kazakhstan_Botai_Eneolithic.SG 0.569
  2046. gendstat: Iran_TepeAbdulHosein_N.SG Switzerland_Bichon.SG 1.274
  2047. gendstat: Iran_TepeAbdulHosein_N.SG Spain_HG.SG 1.098
  2048. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Russia_DevilsCave_N.SG -0.075
  2049. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG South_Africa_400BP.SG 1.018
  2050. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Nepal_Mebrak_2125BP.SG -0.541
  2051. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Russia_Sunghir_UP.SG 1.074
  2052. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Russia_Kostenki14.SG 0.634
  2053. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Kazakhstan_Botai_Eneolithic.SG -0.379
  2054. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Switzerland_Bichon.SG 0.399
  2055. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Spain_HG.SG 0.105
  2056. gendstat: Russia_DevilsCave_N.SG South_Africa_400BP.SG 1.307
  2057. gendstat: Russia_DevilsCave_N.SG Nepal_Mebrak_2125BP.SG -0.641
  2058. gendstat: Russia_DevilsCave_N.SG Russia_Sunghir_UP.SG 1.241
  2059. gendstat: Russia_DevilsCave_N.SG Russia_Kostenki14.SG 0.723
  2060. gendstat: Russia_DevilsCave_N.SG Kazakhstan_Botai_Eneolithic.SG -0.261
  2061. gendstat: Russia_DevilsCave_N.SG Switzerland_Bichon.SG 0.443
  2062. gendstat: Russia_DevilsCave_N.SG Spain_HG.SG 0.194
  2063. gendstat: South_Africa_400BP.SG Nepal_Mebrak_2125BP.SG -1.755
  2064. gendstat: South_Africa_400BP.SG Russia_Sunghir_UP.SG -0.016
  2065. gendstat: South_Africa_400BP.SG Russia_Kostenki14.SG -0.347
  2066. gendstat: South_Africa_400BP.SG Kazakhstan_Botai_Eneolithic.SG -1.705
  2067. gendstat: South_Africa_400BP.SG Switzerland_Bichon.SG -0.615
  2068. gendstat: South_Africa_400BP.SG Spain_HG.SG -1.188
  2069. gendstat: Nepal_Mebrak_2125BP.SG Russia_Sunghir_UP.SG 1.692
  2070. gendstat: Nepal_Mebrak_2125BP.SG Russia_Kostenki14.SG 1.151
  2071. gendstat: Nepal_Mebrak_2125BP.SG Kazakhstan_Botai_Eneolithic.SG 0.318
  2072. gendstat: Nepal_Mebrak_2125BP.SG Switzerland_Bichon.SG 0.915
  2073. gendstat: Nepal_Mebrak_2125BP.SG Spain_HG.SG 0.719
  2074. gendstat: Russia_Sunghir_UP.SG Russia_Kostenki14.SG -0.383
  2075. gendstat: Russia_Sunghir_UP.SG Kazakhstan_Botai_Eneolithic.SG -1.765
  2076. gendstat: Russia_Sunghir_UP.SG Switzerland_Bichon.SG -0.625
  2077. gendstat: Russia_Sunghir_UP.SG Spain_HG.SG -1.296
  2078. gendstat: Russia_Kostenki14.SG Kazakhstan_Botai_Eneolithic.SG -1.063
  2079. gendstat: Russia_Kostenki14.SG Switzerland_Bichon.SG -0.241
  2080. gendstat: Russia_Kostenki14.SG Spain_HG.SG -0.662
  2081. gendstat: Kazakhstan_Botai_Eneolithic.SG Switzerland_Bichon.SG 0.795
  2082. gendstat: Kazakhstan_Botai_Eneolithic.SG Spain_HG.SG 0.543
  2083. gendstat: Switzerland_Bichon.SG Spain_HG.SG -0.404
  2084.  
  2085. worst Z-score with right hand mix
  2086. f4(Target, Fit, Base, mix of Right pops; Z: 4.590 sum: 1.000
  2087. Turkey_N.SG -5.743
  2088. Italy_Mesolithic.SG 0.375
  2089. CHG 2.215
  2090. Iran_TepeAbdulHosein_N.SG -2.370
  2091. Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.033
  2092. Russia_DevilsCave_N.SG -0.560
  2093. South_Africa_400BP.SG 5.120
  2094. Nepal_Mebrak_2125BP.SG -1.308
  2095. Russia_Sunghir_UP.SG 3.976
  2096. Russia_Kostenki14.SG 0.770
  2097. Kazakhstan_Botai_Eneolithic.SG -1.482
  2098. Switzerland_Bichon.SG 1.004
  2099. Spain_HG.SG -1.030
  2100.  
  2101. oldmode set: terminating
  2102. ##end of qpAdm: 30.632 seconds cpu 1628.684 Mbytes in use
  2103. qpAdm: parameter file: I6364.qpAdm.par
  2104. ### THE INPUT PARAMETERS
  2105. ##PARAMETER NAME: VALUE
  2106. genotypename: v54.1_1240K.geno
  2107. snpname: v54.1_1240K.snp
  2108. indivname: v54.1_1240K.ind
  2109. popleft: I6364_leftlist.txt
  2110. popright: rightlist
  2111. details: YES
  2112. ## qpAdm -p I6364.qpAdm.par
  2113. ## qpAdm version: 2050
  2114. seed: 2733741
  2115. allsnps set NO. It is recommended that allsnps be set explicitly
  2116. *** recommended that inbreed be explicitly set ***
  2117. inbreed set NO
  2118. read 1073741824 bytes
  2119. read 2147483648 bytes
  2120. read 3221225472 bytes
  2121. read 3467232556 bytes
  2122. packed geno read OK
  2123. end of inpack
  2124.  
  2125. left pops:
  2126. I6364 1
  2127. Russia_MLBA_Sintashta 36
  2128. Russia_Tyumen_HG 1
  2129. Mongolia_North_N 5
  2130. Iran_C_TepeHissar 13
  2131.  
  2132. right pops:
  2133. Cameroon_SMA.SG 2
  2134. Turkey_N.SG 3
  2135. Italy_Mesolithic.SG 3
  2136. CHG 2
  2137. Iran_TepeAbdulHosein_N.SG 3
  2138. Russia_Arkhangelsk_Veretye_Mesolithic.SG 1
  2139. Russia_DevilsCave_N.SG 4
  2140. South_Africa_400BP.SG 4
  2141. Nepal_Mebrak_2125BP.SG 2
  2142. Russia_Sunghir_UP.SG 4
  2143. Russia_Kostenki14.SG 1
  2144. Kazakhstan_Botai_Eneolithic.SG 3
  2145. Switzerland_Bichon.SG 1
  2146. Spain_HG.SG 3
  2147.  
  2148. jackknife block size: 0.050
  2149. snps: 1150467 indivs: 92
  2150. number of blocks for block jackknife: 714
  2151. ## ncols: 1150467
  2152. coverage: I6364 807087
  2153. coverage: Russia_MLBA_Sintashta 1128313
  2154. coverage: Russia_Tyumen_HG 805560
  2155. coverage: Mongolia_North_N 1057835
  2156. coverage: Iran_C_TepeHissar 987000
  2157. coverage: Cameroon_SMA.SG 1148928
  2158. coverage: Turkey_N.SG 1150163
  2159. coverage: Italy_Mesolithic.SG 1141404
  2160. coverage: CHG 1147700
  2161. coverage: Iran_TepeAbdulHosein_N.SG 1061042
  2162. coverage: Russia_Arkhangelsk_Veretye_Mesolithic.SG 1088577
  2163. coverage: Russia_DevilsCave_N.SG 1148318
  2164. coverage: South_Africa_400BP.SG 1150181
  2165. coverage: Nepal_Mebrak_2125BP.SG 594658
  2166. coverage: Russia_Sunghir_UP.SG 1150000
  2167. coverage: Russia_Kostenki14.SG 1048972
  2168. coverage: Kazakhstan_Botai_Eneolithic.SG 1149621
  2169. coverage: Switzerland_Bichon.SG 1140092
  2170. coverage: Spain_HG.SG 1101680
  2171. Effective number of blocks: 631.375
  2172. numsnps used: 426391
  2173. codimension 1
  2174. f4info:
  2175. f4rank: 3 dof: 10 chisq: 6.990 tail: 0.726432236 dofdiff: 12 chisqdiff: -6.990 taildiff: 1
  2176. B:
  2177. scale 1.000 1.000 1.000
  2178. Turkey_N.SG 0.955 -0.392 1.079
  2179. Italy_Mesolithic.SG 1.046 0.735 1.533
  2180. CHG 0.848 -0.563 -0.108
  2181. Iran_TepeAbdulHosein_N.SG 0.626 -0.960 -0.983
  2182. Russia_Arkhangelsk_Veretye_Mesolithic.SG 1.046 1.568 -0.704
  2183. Russia_DevilsCave_N.SG -1.953 1.211 1.098
  2184. South_Africa_400BP.SG 0.012 -0.058 0.033
  2185. Nepal_Mebrak_2125BP.SG -1.623 1.176 0.562
  2186. Russia_Sunghir_UP.SG 0.412 0.479 0.200
  2187. Russia_Kostenki14.SG 0.410 0.452 -0.109
  2188. Kazakhstan_Botai_Eneolithic.SG 0.532 2.078 -1.933
  2189. Switzerland_Bichon.SG 0.992 0.698 1.312
  2190. Spain_HG.SG 0.859 0.721 0.990
  2191. A:
  2192. scale 358.069 523.068 1001.573
  2193. Russia_MLBA_Sintashta 0.925 -0.110 0.626
  2194. Russia_Tyumen_HG 0.573 1.262 -1.658
  2195. Mongolia_North_N -1.657 0.099 -0.071
  2196. Iran_C_TepeHissar 0.266 -1.545 -0.924
  2197.  
  2198.  
  2199. full rank
  2200. f4info:
  2201. f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 6.990 taildiff: 0.726432236
  2202. B:
  2203. scale 386.171 303.929 211.595 294.201
  2204. Turkey_N.SG 1.152 -0.418 -1.026 0.159
  2205. Italy_Mesolithic.SG 1.226 0.187 -1.100 -0.950
  2206. CHG 0.778 -0.002 -0.905 0.605
  2207. Iran_TepeAbdulHosein_N.SG 0.353 0.018 -0.713 1.118
  2208. Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.747 2.079 -0.955 -0.965
  2209. Russia_DevilsCave_N.SG -1.917 -0.709 1.870 -1.904
  2210. South_Africa_400BP.SG -0.072 -0.117 -0.074 -0.046
  2211. Nepal_Mebrak_2125BP.SG -1.633 -0.216 1.600 -1.593
  2212. Russia_Sunghir_UP.SG 0.424 0.484 -0.393 -0.407
  2213. Russia_Kostenki14.SG 0.370 0.632 -0.379 -0.290
  2214. Kazakhstan_Botai_Eneolithic.SG -0.242 2.662 -0.499 -1.297
  2215. Switzerland_Bichon.SG 1.177 0.275 -1.014 -0.836
  2216. Spain_HG.SG 0.880 0.333 -0.926 -0.854
  2217. A:
  2218. scale 2.000 2.000 2.000 2.000
  2219. Russia_MLBA_Sintashta 2.000 0.000 0.000 0.000
  2220. Russia_Tyumen_HG 0.000 2.000 0.000 0.000
  2221. Mongolia_North_N 0.000 0.000 2.000 0.000
  2222. Iran_C_TepeHissar 0.000 0.000 0.000 2.000
  2223.  
  2224.  
  2225. best coefficients: 0.476 0.119 0.321 0.084
  2226. Jackknife mean: 0.475963531 0.119344960 0.320642426 0.084049083
  2227. std. errors: 0.045 0.025 0.018 0.035
  2228.  
  2229. error covariance (* 1,000,000)
  2230. 2050 -726 -1 -1324
  2231. -726 621 -161 266
  2232. -1 -161 333 -170
  2233. -1324 266 -170 1228
  2234.  
  2235.  
  2236. summ: I6364 4 0.726432 0.476 0.119 0.321 0.084 2050 -726 -1-1324 621 ...
  2237. -161 266 333 -170 1228
  2238.  
  2239. fixed pat wt dof chisq tail prob
  2240. 0000 0 10 6.990 0.726432 0.476 0.119 0.321 0.084
  2241. 0001 1 11 14.275 0.218145 0.569 0.102 0.329 0.000
  2242. 0010 1 11 292.432 0 0.443 0.306 0.000 0.251
  2243. 0100 1 11 29.015 0.00225751 0.614 0.000 0.354 0.032
  2244. 1000 1 11 106.233 1.03294e-17 0.000 0.287 0.326 0.387
  2245. 0011 2 12 334.677 0 0.742 0.258 0.000 0.000
  2246. 0101 2 12 29.785 0.00300789 0.645 0.000 0.355 0.000
  2247. 0110 2 12 423.136 0 0.857 0.000 0.000 0.143
  2248. 1001 2 12 404.644 0 0.000 0.546 0.454 0.000
  2249. 1010 2 12 357.320 0 0.000 0.484 0.000 0.516
  2250. 1100 2 12 304.878 0 0.000 0.000 0.450 0.550
  2251. 0111 3 13 435.687 0 1.000 0.000 0.000 0.000
  2252. 1011 3 13 728.782 0 0.000 1.000 0.000 0.000
  2253. 1101 3 13 1083.956 0 0.000 0.000 1.000 0.000
  2254. 1110 3 13 873.826 0 0.000 0.000 0.000 1.000
  2255. best pat: 0000 0.726432 - -
  2256. best pat: 0001 0.218145 chi(nested): 7.286 p-value for nested model: 0.00695122
  2257. best pat: 0101 0.00300789 chi(nested): 15.510 p-value for nested model: 8.20619e-05
  2258. best pat: 0111 6.35968e-85 chi(nested): 405.902 p-value for nested model: 2.8663e-90
  2259.  
  2260. coeffs: 0.476 0.119 0.321 0.084
  2261.  
  2262. ## dscore:: f_4(Base, Fit, Rbase, right2)
  2263. ## genstat:: f_4(Base, Fit, right1, right2)
  2264.  
  2265. details: Russia_MLBA_Sintashta Turkey_N.SG 0.002983 8.666185
  2266. details: Russia_Tyumen_HG Turkey_N.SG -0.001376 -3.044126
  2267. details: Mongolia_North_N Turkey_N.SG -0.004851 -12.904236
  2268. details: Iran_C_TepeHissar Turkey_N.SG 0.000542 1.453228
  2269. dscore: Turkey_N.SG f4: -0.000254 Z: -0.768413
  2270.  
  2271. details: Russia_MLBA_Sintashta Italy_Mesolithic.SG 0.003175 8.104456
  2272. details: Russia_Tyumen_HG Italy_Mesolithic.SG 0.000616 1.200589
  2273. details: Mongolia_North_N Italy_Mesolithic.SG -0.005198 -11.996625
  2274. details: Iran_C_TepeHissar Italy_Mesolithic.SG -0.003231 -7.745733
  2275. dscore: Italy_Mesolithic.SG f4: -0.000353 Z: -0.932401
  2276.  
  2277. details: Russia_MLBA_Sintashta CHG 0.002015 5.638694
  2278. details: Russia_Tyumen_HG CHG -0.000008 -0.016583
  2279. details: Mongolia_North_N CHG -0.004275 -10.890670
  2280. details: Iran_C_TepeHissar CHG 0.002056 5.258902
  2281. dscore: CHG f4: -0.000240 Z: -0.698253
  2282.  
  2283. details: Russia_MLBA_Sintashta Iran_TepeAbdulHosein_N.SG 0.000915 2.665164
  2284. details: Russia_Tyumen_HG Iran_TepeAbdulHosein_N.SG 0.000058 0.131939
  2285. details: Mongolia_North_N Iran_TepeAbdulHosein_N.SG -0.003370 -8.872330
  2286. details: Iran_C_TepeHissar Iran_TepeAbdulHosein_N.SG 0.003801 10.210388
  2287. dscore: Iran_TepeAbdulHosein_N.SG f4: -0.000319 Z: -0.964648
  2288.  
  2289. details: Russia_MLBA_Sintashta Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.001933 4.393106
  2290. details: Russia_Tyumen_HG Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.006841 11.388002
  2291. details: Mongolia_North_N Russia_Arkhangelsk_Veretye_Mesolithic.SG -0.004515 -9.311744
  2292. details: Iran_C_TepeHissar Russia_Arkhangelsk_Veretye_Mesolithic.SG -0.003278 -7.053945
  2293. dscore: Russia_Arkhangelsk_Veretye_Mesolithic.SG f4: 0.000014 Z: 0.031829
  2294.  
  2295. details: Russia_MLBA_Sintashta Russia_DevilsCave_N.SG -0.004964 -12.746181
  2296. details: Russia_Tyumen_HG Russia_DevilsCave_N.SG -0.002331 -4.685728
  2297. details: Mongolia_North_N Russia_DevilsCave_N.SG 0.008839 19.888818
  2298. details: Iran_C_TepeHissar Russia_DevilsCave_N.SG -0.006471 -15.954379
  2299. dscore: Russia_DevilsCave_N.SG f4: -0.000350 Z: -0.927253
  2300.  
  2301. details: Russia_MLBA_Sintashta South_Africa_400BP.SG -0.000187 -0.804656
  2302. details: Russia_Tyumen_HG South_Africa_400BP.SG -0.000385 -1.285292
  2303. details: Mongolia_North_N South_Africa_400BP.SG -0.000351 -1.370884
  2304. details: Iran_C_TepeHissar South_Africa_400BP.SG -0.000157 -0.628213
  2305. dscore: South_Africa_400BP.SG f4: -0.000261 Z: -1.156265
  2306.  
  2307. details: Russia_MLBA_Sintashta Nepal_Mebrak_2125BP.SG -0.004228 -9.853098
  2308. details: Russia_Tyumen_HG Nepal_Mebrak_2125BP.SG -0.000712 -1.270145
  2309. details: Mongolia_North_N Nepal_Mebrak_2125BP.SG 0.007563 15.388068
  2310. details: Iran_C_TepeHissar Nepal_Mebrak_2125BP.SG -0.005415 -11.977365
  2311. dscore: Nepal_Mebrak_2125BP.SG f4: -0.000127 Z: -0.303076
  2312.  
  2313. details: Russia_MLBA_Sintashta Russia_Sunghir_UP.SG 0.001097 3.275114
  2314. details: Russia_Tyumen_HG Russia_Sunghir_UP.SG 0.001591 3.383104
  2315. details: Mongolia_North_N Russia_Sunghir_UP.SG -0.001858 -4.663376
  2316. details: Iran_C_TepeHissar Russia_Sunghir_UP.SG -0.001383 -3.759809
  2317. dscore: Russia_Sunghir_UP.SG f4: 0.000000 Z: 0.000361
  2318.  
  2319. details: Russia_MLBA_Sintashta Russia_Kostenki14.SG 0.000957 2.309325
  2320. details: Russia_Tyumen_HG Russia_Kostenki14.SG 0.002080 3.633581
  2321. details: Mongolia_North_N Russia_Kostenki14.SG -0.001792 -3.843830
  2322. details: Iran_C_TepeHissar Russia_Kostenki14.SG -0.000987 -2.237614
  2323. dscore: Russia_Kostenki14.SG f4: 0.000047 Z: 0.115817
  2324.  
  2325. details: Russia_MLBA_Sintashta Kazakhstan_Botai_Eneolithic.SG -0.000627 -1.717793
  2326. details: Russia_Tyumen_HG Kazakhstan_Botai_Eneolithic.SG 0.008757 17.952191
  2327. details: Mongolia_North_N Kazakhstan_Botai_Eneolithic.SG -0.002360 -5.645564
  2328. details: Iran_C_TepeHissar Kazakhstan_Botai_Eneolithic.SG -0.004410 -11.410456
  2329. dscore: Kazakhstan_Botai_Eneolithic.SG f4: -0.000380 Z: -1.066785
  2330.  
  2331. details: Russia_MLBA_Sintashta Switzerland_Bichon.SG 0.003049 6.886965
  2332. details: Russia_Tyumen_HG Switzerland_Bichon.SG 0.000905 1.492181
  2333. details: Mongolia_North_N Switzerland_Bichon.SG -0.004791 -9.553423
  2334. details: Iran_C_TepeHissar Switzerland_Bichon.SG -0.002842 -6.010002
  2335. dscore: Switzerland_Bichon.SG f4: -0.000215 Z: -0.494645
  2336.  
  2337. details: Russia_MLBA_Sintashta Spain_HG.SG 0.002280 6.137122
  2338. details: Russia_Tyumen_HG Spain_HG.SG 0.001095 2.248683
  2339. details: Mongolia_North_N Spain_HG.SG -0.004378 -10.833281
  2340. details: Iran_C_TepeHissar Spain_HG.SG -0.002902 -7.289554
  2341. dscore: Spain_HG.SG f4: -0.000432 Z: -1.208470
  2342.  
  2343. gendstat: Cameroon_SMA.SG Turkey_N.SG -0.768
  2344. gendstat: Cameroon_SMA.SG Italy_Mesolithic.SG -0.932
  2345. gendstat: Cameroon_SMA.SG CHG -0.698
  2346. gendstat: Cameroon_SMA.SG Iran_TepeAbdulHosein_N.SG -0.965
  2347. gendstat: Cameroon_SMA.SG Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.032
  2348. gendstat: Cameroon_SMA.SG Russia_DevilsCave_N.SG -0.927
  2349. gendstat: Cameroon_SMA.SG South_Africa_400BP.SG -1.156
  2350. gendstat: Cameroon_SMA.SG Nepal_Mebrak_2125BP.SG -0.303
  2351. gendstat: Cameroon_SMA.SG Russia_Sunghir_UP.SG 0.000
  2352. gendstat: Cameroon_SMA.SG Russia_Kostenki14.SG 0.116
  2353. gendstat: Cameroon_SMA.SG Kazakhstan_Botai_Eneolithic.SG -1.067
  2354. gendstat: Cameroon_SMA.SG Switzerland_Bichon.SG -0.495
  2355. gendstat: Cameroon_SMA.SG Spain_HG.SG -1.208
  2356. gendstat: Turkey_N.SG Italy_Mesolithic.SG -0.298
  2357. gendstat: Turkey_N.SG CHG 0.044
  2358. gendstat: Turkey_N.SG Iran_TepeAbdulHosein_N.SG -0.201
  2359. gendstat: Turkey_N.SG Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.666
  2360. gendstat: Turkey_N.SG Russia_DevilsCave_N.SG -0.226
  2361. gendstat: Turkey_N.SG South_Africa_400BP.SG -0.021
  2362. gendstat: Turkey_N.SG Nepal_Mebrak_2125BP.SG 0.275
  2363. gendstat: Turkey_N.SG Russia_Sunghir_UP.SG 0.854
  2364. gendstat: Turkey_N.SG Russia_Kostenki14.SG 0.788
  2365. gendstat: Turkey_N.SG Kazakhstan_Botai_Eneolithic.SG -0.363
  2366. gendstat: Turkey_N.SG Switzerland_Bichon.SG 0.099
  2367. gendstat: Turkey_N.SG Spain_HG.SG -0.600
  2368. gendstat: Italy_Mesolithic.SG CHG 0.294
  2369. gendstat: Italy_Mesolithic.SG Iran_TepeAbdulHosein_N.SG 0.089
  2370. gendstat: Italy_Mesolithic.SG Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.887
  2371. gendstat: Italy_Mesolithic.SG Russia_DevilsCave_N.SG 0.007
  2372. gendstat: Italy_Mesolithic.SG South_Africa_400BP.SG 0.253
  2373. gendstat: Italy_Mesolithic.SG Nepal_Mebrak_2125BP.SG 0.461
  2374. gendstat: Italy_Mesolithic.SG Russia_Sunghir_UP.SG 1.069
  2375. gendstat: Italy_Mesolithic.SG Russia_Kostenki14.SG 0.972
  2376. gendstat: Italy_Mesolithic.SG Kazakhstan_Botai_Eneolithic.SG -0.074
  2377. gendstat: Italy_Mesolithic.SG Switzerland_Bichon.SG 0.423
  2378. gendstat: Italy_Mesolithic.SG Spain_HG.SG -0.301
  2379. gendstat: CHG Iran_TepeAbdulHosein_N.SG -0.238
  2380. gendstat: CHG Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.603
  2381. gendstat: CHG Russia_DevilsCave_N.SG -0.248
  2382. gendstat: CHG South_Africa_400BP.SG -0.062
  2383. gendstat: CHG Nepal_Mebrak_2125BP.SG 0.237
  2384. gendstat: CHG Russia_Sunghir_UP.SG 0.697
  2385. gendstat: CHG Russia_Kostenki14.SG 0.675
  2386. gendstat: CHG Kazakhstan_Botai_Eneolithic.SG -0.387
  2387. gendstat: CHG Switzerland_Bichon.SG 0.057
  2388. gendstat: CHG Spain_HG.SG -0.560
  2389. gendstat: Iran_TepeAbdulHosein_N.SG Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.833
  2390. gendstat: Iran_TepeAbdulHosein_N.SG Russia_DevilsCave_N.SG -0.075
  2391. gendstat: Iran_TepeAbdulHosein_N.SG South_Africa_400BP.SG 0.186
  2392. gendstat: Iran_TepeAbdulHosein_N.SG Nepal_Mebrak_2125BP.SG 0.434
  2393. gendstat: Iran_TepeAbdulHosein_N.SG Russia_Sunghir_UP.SG 0.994
  2394. gendstat: Iran_TepeAbdulHosein_N.SG Russia_Kostenki14.SG 0.949
  2395. gendstat: Iran_TepeAbdulHosein_N.SG Kazakhstan_Botai_Eneolithic.SG -0.180
  2396. gendstat: Iran_TepeAbdulHosein_N.SG Switzerland_Bichon.SG 0.253
  2397. gendstat: Iran_TepeAbdulHosein_N.SG Spain_HG.SG -0.331
  2398. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Russia_DevilsCave_N.SG -0.761
  2399. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG South_Africa_400BP.SG -0.670
  2400. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Nepal_Mebrak_2125BP.SG -0.272
  2401. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Russia_Sunghir_UP.SG -0.034
  2402. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Russia_Kostenki14.SG 0.075
  2403. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Kazakhstan_Botai_Eneolithic.SG -1.018
  2404. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Switzerland_Bichon.SG -0.506
  2405. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Spain_HG.SG -1.149
  2406. gendstat: Russia_DevilsCave_N.SG South_Africa_400BP.SG 0.242
  2407. gendstat: Russia_DevilsCave_N.SG Nepal_Mebrak_2125BP.SG 0.608
  2408. gendstat: Russia_DevilsCave_N.SG Russia_Sunghir_UP.SG 0.853
  2409. gendstat: Russia_DevilsCave_N.SG Russia_Kostenki14.SG 0.893
  2410. gendstat: Russia_DevilsCave_N.SG Kazakhstan_Botai_Eneolithic.SG -0.080
  2411. gendstat: Russia_DevilsCave_N.SG Switzerland_Bichon.SG 0.276
  2412. gendstat: Russia_DevilsCave_N.SG Spain_HG.SG -0.190
  2413. gendstat: South_Africa_400BP.SG Nepal_Mebrak_2125BP.SG 0.335
  2414. gendstat: South_Africa_400BP.SG Russia_Sunghir_UP.SG 0.840
  2415. gendstat: South_Africa_400BP.SG Russia_Kostenki14.SG 0.801
  2416. gendstat: South_Africa_400BP.SG Kazakhstan_Botai_Eneolithic.SG -0.349
  2417. gendstat: South_Africa_400BP.SG Switzerland_Bichon.SG 0.108
  2418. gendstat: South_Africa_400BP.SG Spain_HG.SG -0.511
  2419. gendstat: Nepal_Mebrak_2125BP.SG Russia_Sunghir_UP.SG 0.287
  2420. gendstat: Nepal_Mebrak_2125BP.SG Russia_Kostenki14.SG 0.358
  2421. gendstat: Nepal_Mebrak_2125BP.SG Kazakhstan_Botai_Eneolithic.SG -0.584
  2422. gendstat: Nepal_Mebrak_2125BP.SG Switzerland_Bichon.SG -0.169
  2423. gendstat: Nepal_Mebrak_2125BP.SG Spain_HG.SG -0.672
  2424. gendstat: Russia_Sunghir_UP.SG Russia_Kostenki14.SG 0.139
  2425. gendstat: Russia_Sunghir_UP.SG Kazakhstan_Botai_Eneolithic.SG -1.170
  2426. gendstat: Russia_Sunghir_UP.SG Switzerland_Bichon.SG -0.542
  2427. gendstat: Russia_Sunghir_UP.SG Spain_HG.SG -1.442
  2428. gendstat: Russia_Kostenki14.SG Kazakhstan_Botai_Eneolithic.SG -1.073
  2429. gendstat: Russia_Kostenki14.SG Switzerland_Bichon.SG -0.568
  2430. gendstat: Russia_Kostenki14.SG Spain_HG.SG -1.245
  2431. gendstat: Kazakhstan_Botai_Eneolithic.SG Switzerland_Bichon.SG 0.391
  2432. gendstat: Kazakhstan_Botai_Eneolithic.SG Spain_HG.SG -0.153
  2433. gendstat: Switzerland_Bichon.SG Spain_HG.SG -0.645
  2434.  
  2435. worst Z-score with right hand mix
  2436. f4(Target, Fit, Base, mix of Right pops; Z: -2.482 sum: 1.000
  2437. Turkey_N.SG 0.049
  2438. Italy_Mesolithic.SG 0.300
  2439. CHG 0.012
  2440. Iran_TepeAbdulHosein_N.SG 0.426
  2441. Russia_Arkhangelsk_Veretye_Mesolithic.SG -0.445
  2442. Russia_DevilsCave_N.SG 0.410
  2443. South_Africa_400BP.SG 0.734
  2444. Nepal_Mebrak_2125BP.SG -0.292
  2445. Russia_Sunghir_UP.SG -0.782
  2446. Russia_Kostenki14.SG -0.362
  2447. Kazakhstan_Botai_Eneolithic.SG 0.462
  2448. Switzerland_Bichon.SG -0.290
  2449. Spain_HG.SG 0.776
  2450.  
  2451. oldmode set: terminating
  2452. ##end of qpAdm: 35.813 seconds cpu 1628.684 Mbytes in use
  2453. qpAdm: parameter file: ARS026.qpAdm.par
  2454. ### THE INPUT PARAMETERS
  2455. ##PARAMETER NAME: VALUE
  2456. genotypename: v54.1_1240K.geno
  2457. snpname: v54.1_1240K.snp
  2458. indivname: v54.1_1240K.ind
  2459. popleft: ARS026_leftlist.txt
  2460. popright: rightlist
  2461. details: YES
  2462. ## qpAdm -p ARS026.qpAdm.par
  2463. ## qpAdm version: 2050
  2464. seed: 31512867
  2465. allsnps set NO. It is recommended that allsnps be set explicitly
  2466. *** recommended that inbreed be explicitly set ***
  2467. inbreed set NO
  2468. read 1073741824 bytes
  2469. read 2147483648 bytes
  2470. read 3221225472 bytes
  2471. read 3467232556 bytes
  2472. packed geno read OK
  2473. end of inpack
  2474.  
  2475. left pops:
  2476. ARS026 1
  2477. Russia_MLBA_Sintashta 36
  2478. Russia_Tyumen_HG 1
  2479. Mongolia_North_N 5
  2480. Iran_C_TepeHissar 13
  2481.  
  2482. right pops:
  2483. Cameroon_SMA.SG 2
  2484. Turkey_N.SG 3
  2485. Italy_Mesolithic.SG 3
  2486. CHG 2
  2487. Iran_TepeAbdulHosein_N.SG 3
  2488. Russia_Arkhangelsk_Veretye_Mesolithic.SG 1
  2489. Russia_DevilsCave_N.SG 4
  2490. South_Africa_400BP.SG 4
  2491. Nepal_Mebrak_2125BP.SG 2
  2492. Russia_Sunghir_UP.SG 4
  2493. Russia_Kostenki14.SG 1
  2494. Kazakhstan_Botai_Eneolithic.SG 3
  2495. Switzerland_Bichon.SG 1
  2496. Spain_HG.SG 3
  2497.  
  2498. jackknife block size: 0.050
  2499. snps: 1150466 indivs: 92
  2500. number of blocks for block jackknife: 714
  2501. ## ncols: 1150466
  2502. coverage: ARS026 947588
  2503. coverage: Russia_MLBA_Sintashta 1128313
  2504. coverage: Russia_Tyumen_HG 805560
  2505. coverage: Mongolia_North_N 1057835
  2506. coverage: Iran_C_TepeHissar 987000
  2507. coverage: Cameroon_SMA.SG 1148928
  2508. coverage: Turkey_N.SG 1150163
  2509. coverage: Italy_Mesolithic.SG 1141404
  2510. coverage: CHG 1147700
  2511. coverage: Iran_TepeAbdulHosein_N.SG 1061042
  2512. coverage: Russia_Arkhangelsk_Veretye_Mesolithic.SG 1088577
  2513. coverage: Russia_DevilsCave_N.SG 1148318
  2514. coverage: South_Africa_400BP.SG 1150181
  2515. coverage: Nepal_Mebrak_2125BP.SG 594658
  2516. coverage: Russia_Sunghir_UP.SG 1150000
  2517. coverage: Russia_Kostenki14.SG 1048972
  2518. coverage: Kazakhstan_Botai_Eneolithic.SG 1149621
  2519. coverage: Switzerland_Bichon.SG 1140092
  2520. coverage: Spain_HG.SG 1101680
  2521. Effective number of blocks: 631.509
  2522. numsnps used: 453215
  2523. codimension 1
  2524. f4info:
  2525. f4rank: 3 dof: 10 chisq: 12.919 tail: 0.22821547 dofdiff: 12 chisqdiff: -12.919 taildiff: 1
  2526. B:
  2527. scale 1.000 1.000 1.000
  2528. Turkey_N.SG 0.931 -0.285 1.104
  2529. Italy_Mesolithic.SG 0.966 0.825 1.528
  2530. CHG 0.878 -0.496 -0.066
  2531. Iran_TepeAbdulHosein_N.SG 0.692 -0.886 -0.953
  2532. Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.934 1.662 -0.693
  2533. Russia_DevilsCave_N.SG -2.054 1.050 0.946
  2534. South_Africa_400BP.SG 0.005 -0.038 0.045
  2535. Nepal_Mebrak_2125BP.SG -1.717 1.060 0.401
  2536. Russia_Sunghir_UP.SG 0.374 0.515 0.259
  2537. Russia_Kostenki14.SG 0.378 0.461 -0.115
  2538. Kazakhstan_Botai_Eneolithic.SG 0.413 2.103 -2.033
  2539. Switzerland_Bichon.SG 0.922 0.814 1.320
  2540. Spain_HG.SG 0.779 0.809 1.018
  2541. A:
  2542. scale 350.433 504.833 1102.183
  2543. Russia_MLBA_Sintashta 1.036 -0.181 0.935
  2544. Russia_Tyumen_HG 0.653 1.080 -1.598
  2545. Mongolia_North_N -1.503 -0.231 0.046
  2546. Iran_C_TepeHissar 0.490 -1.658 -0.756
  2547.  
  2548.  
  2549. full rank
  2550. f4info:
  2551. f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 12.919 taildiff: 0.22821547
  2552. B:
  2553. scale 319.897 312.556 230.252 260.560
  2554. Turkey_N.SG 1.089 -0.269 -0.991 0.258
  2555. Italy_Mesolithic.SG 1.238 0.421 -1.038 -0.659
  2556. CHG 0.856 0.229 -0.821 0.728
  2557. Iran_TepeAbdulHosein_N.SG 0.466 0.221 -0.641 1.131
  2558. Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.505 2.045 -1.114 -0.978
  2559. Russia_DevilsCave_N.SG -1.839 -0.940 1.909 -1.880
  2560. South_Africa_400BP.SG -0.097 -0.157 -0.092 -0.081
  2561. Nepal_Mebrak_2125BP.SG -1.801 -0.635 1.480 -1.767
  2562. Russia_Sunghir_UP.SG 0.368 0.480 -0.418 -0.370
  2563. Russia_Kostenki14.SG 0.152 0.462 -0.523 -0.355
  2564. Kazakhstan_Botai_Eneolithic.SG -0.494 2.499 -0.724 -1.395
  2565. Switzerland_Bichon.SG 1.180 0.522 -0.968 -0.600
  2566. Spain_HG.SG 0.804 0.442 -0.929 -0.709
  2567. A:
  2568. scale 2.000 2.000 2.000 2.000
  2569. Russia_MLBA_Sintashta 2.000 0.000 0.000 0.000
  2570. Russia_Tyumen_HG 0.000 2.000 0.000 0.000
  2571. Mongolia_North_N 0.000 0.000 2.000 0.000
  2572. Iran_C_TepeHissar 0.000 0.000 0.000 2.000
  2573.  
  2574.  
  2575. best coefficients: 0.378 0.211 0.367 0.045
  2576. Jackknife mean: 0.378261700 0.210526619 0.366525925 0.044685756
  2577. std. errors: 0.043 0.024 0.017 0.033
  2578.  
  2579. error covariance (* 1,000,000)
  2580. 1844 -639 -34 -1171
  2581. -639 578 -136 197
  2582. -34 -136 285 -115
  2583. -1171 197 -115 1089
  2584.  
  2585.  
  2586. summ: ARS026 4 0.228215 0.378 0.211 0.367 0.045 1844 -639 -34 -1171 578 ...
  2587. -136 197 285 -115 1089
  2588.  
  2589. fixed pat wt dof chisq tail prob
  2590. 0000 0 10 12.919 0.228215 0.378 0.211 0.367 0.045
  2591. 0001 1 11 17.304 0.0991985 0.426 0.203 0.371 0.000
  2592. 0010 1 11 418.043 0 0.301 0.488 0.000 0.211
  2593. 0100 1 11 92.405 5.62438e-15 0.618 0.000 0.421 -0.040 infeasible
  2594. 1000 1 11 81.799 6.6172e-13 0.000 0.344 0.376 0.280
  2595. 0011 2 12 448.839 0 0.550 0.450 0.000 0.000
  2596. 0101 2 12 96.848 2.30145e-15 0.579 0.000 0.421 0.000
  2597. 0110 2 12 722.881 0 0.918 0.000 0.000 0.082
  2598. 1001 2 12 249.257 0 0.000 0.549 0.451 0.000
  2599. 1010 2 12 449.328 0 0.000 0.626 0.000 0.374
  2600. 1100 2 12 375.846 0 0.000 0.000 0.528 0.472
  2601. 0111 3 13 728.917 0 1.000 0.000 0.000 0.000
  2602. 1011 3 13 638.611 0 0.000 1.000 0.000 0.000
  2603. 1101 3 13 1103.061 0 0.000 0.000 1.000 0.000
  2604. 1110 3 13 1253.825 0 0.000 0.000 0.000 1.000
  2605. best pat: 0000 0.228215 - -
  2606. best pat: 0001 0.0991985 chi(nested): 4.385 p-value for nested model: 0.0362634
  2607. best pat: 0101 2.30145e-15 chi(nested): 79.544 p-value for nested model: 4.71514e-19
  2608. best pat: 1011 4.4546e-128 not nested
  2609.  
  2610. coeffs: 0.378 0.211 0.367 0.045
  2611.  
  2612. ## dscore:: f_4(Base, Fit, Rbase, right2)
  2613. ## genstat:: f_4(Base, Fit, right1, right2)
  2614.  
  2615. details: Russia_MLBA_Sintashta Turkey_N.SG 0.003403 10.357715
  2616. details: Russia_Tyumen_HG Turkey_N.SG -0.000861 -1.938485
  2617. details: Mongolia_North_N Turkey_N.SG -0.004302 -11.447234
  2618. details: Iran_C_TepeHissar Turkey_N.SG 0.000989 2.779255
  2619. dscore: Turkey_N.SG f4: -0.000427 Z: -1.309286
  2620.  
  2621. details: Russia_MLBA_Sintashta Italy_Mesolithic.SG 0.003869 9.717205
  2622. details: Russia_Tyumen_HG Italy_Mesolithic.SG 0.001349 2.656617
  2623. details: Mongolia_North_N Italy_Mesolithic.SG -0.004509 -10.368995
  2624. details: Iran_C_TepeHissar Italy_Mesolithic.SG -0.002528 -5.962762
  2625. dscore: Italy_Mesolithic.SG f4: -0.000019 Z: -0.050155
  2626.  
  2627. details: Russia_MLBA_Sintashta CHG 0.002675 6.996958
  2628. details: Russia_Tyumen_HG CHG 0.000733 1.404960
  2629. details: Mongolia_North_N CHG -0.003565 -8.765935
  2630. details: Iran_C_TepeHissar CHG 0.002793 6.996764
  2631. dscore: CHG f4: -0.000016 Z: -0.043393
  2632.  
  2633. details: Russia_MLBA_Sintashta Iran_TepeAbdulHosein_N.SG 0.001457 4.290823
  2634. details: Russia_Tyumen_HG Iran_TepeAbdulHosein_N.SG 0.000706 1.549449
  2635. details: Mongolia_North_N Iran_TepeAbdulHosein_N.SG -0.002785 -7.562275
  2636. details: Iran_C_TepeHissar Iran_TepeAbdulHosein_N.SG 0.004341 11.533034
  2637. dscore: Iran_TepeAbdulHosein_N.SG f4: -0.000127 Z: -0.383335
  2638.  
  2639. details: Russia_MLBA_Sintashta Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.001579 3.534360
  2640. details: Russia_Tyumen_HG Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.006542 11.099023
  2641. details: Mongolia_North_N Russia_Arkhangelsk_Veretye_Mesolithic.SG -0.004837 -9.832733
  2642. details: Iran_C_TepeHissar Russia_Arkhangelsk_Veretye_Mesolithic.SG -0.003754 -7.940834
  2643. dscore: Russia_Arkhangelsk_Veretye_Mesolithic.SG f4: 0.000034 Z: 0.078124
  2644.  
  2645. details: Russia_MLBA_Sintashta Russia_DevilsCave_N.SG -0.005750 -14.372226
  2646. details: Russia_Tyumen_HG Russia_DevilsCave_N.SG -0.003008 -5.678293
  2647. details: Mongolia_North_N Russia_DevilsCave_N.SG 0.008293 19.769663
  2648. details: Iran_C_TepeHissar Russia_DevilsCave_N.SG -0.007214 -17.423362
  2649. dscore: Russia_DevilsCave_N.SG f4: -0.000091 Z: -0.235772
  2650.  
  2651. details: Russia_MLBA_Sintashta South_Africa_400BP.SG -0.000303 -1.401919
  2652. details: Russia_Tyumen_HG South_Africa_400BP.SG -0.000504 -1.746403
  2653. details: Mongolia_North_N South_Africa_400BP.SG -0.000400 -1.694910
  2654. details: Iran_C_TepeHissar South_Africa_400BP.SG -0.000312 -1.325234
  2655. dscore: South_Africa_400BP.SG f4: -0.000381 Z: -1.810860
  2656.  
  2657. details: Russia_MLBA_Sintashta Nepal_Mebrak_2125BP.SG -0.005631 -13.735117
  2658. details: Russia_Tyumen_HG Nepal_Mebrak_2125BP.SG -0.002032 -3.694519
  2659. details: Mongolia_North_N Nepal_Mebrak_2125BP.SG 0.006427 14.505205
  2660. details: Iran_C_TepeHissar Nepal_Mebrak_2125BP.SG -0.006782 -15.661465
  2661. dscore: Nepal_Mebrak_2125BP.SG f4: -0.000505 Z: -1.284369
  2662.  
  2663. details: Russia_MLBA_Sintashta Russia_Sunghir_UP.SG 0.001150 3.358320
  2664. details: Russia_Tyumen_HG Russia_Sunghir_UP.SG 0.001535 3.288280
  2665. details: Mongolia_North_N Russia_Sunghir_UP.SG -0.001816 -4.770948
  2666. details: Iran_C_TepeHissar Russia_Sunghir_UP.SG -0.001418 -3.759238
  2667. dscore: Russia_Sunghir_UP.SG f4: 0.000029 Z: 0.086749
  2668.  
  2669. details: Russia_MLBA_Sintashta Russia_Kostenki14.SG 0.000476 1.150335
  2670. details: Russia_Tyumen_HG Russia_Kostenki14.SG 0.001478 2.630937
  2671. details: Mongolia_North_N Russia_Kostenki14.SG -0.002271 -4.896066
  2672. details: Iran_C_TepeHissar Russia_Kostenki14.SG -0.001364 -3.003109
  2673. dscore: Russia_Kostenki14.SG f4: -0.000402 Z: -0.991098
  2674.  
  2675. details: Russia_MLBA_Sintashta Kazakhstan_Botai_Eneolithic.SG -0.001544 -4.197436
  2676. details: Russia_Tyumen_HG Kazakhstan_Botai_Eneolithic.SG 0.007995 16.262467
  2677. details: Mongolia_North_N Kazakhstan_Botai_Eneolithic.SG -0.003143 -7.980132
  2678. details: Iran_C_TepeHissar Kazakhstan_Botai_Eneolithic.SG -0.005355 -13.598300
  2679. dscore: Kazakhstan_Botai_Eneolithic.SG f4: -0.000292 Z: -0.822535
  2680.  
  2681. details: Russia_MLBA_Sintashta Switzerland_Bichon.SG 0.003688 8.509504
  2682. details: Russia_Tyumen_HG Switzerland_Bichon.SG 0.001670 2.926825
  2683. details: Mongolia_North_N Switzerland_Bichon.SG -0.004203 -9.010165
  2684. details: Iran_C_TepeHissar Switzerland_Bichon.SG -0.002302 -5.050185
  2685. dscore: Switzerland_Bichon.SG f4: 0.000102 Z: 0.247705
  2686.  
  2687. details: Russia_MLBA_Sintashta Spain_HG.SG 0.002514 7.033164
  2688. details: Russia_Tyumen_HG Spain_HG.SG 0.001414 3.009680
  2689. details: Mongolia_North_N Spain_HG.SG -0.004034 -10.296334
  2690. details: Iran_C_TepeHissar Spain_HG.SG -0.002721 -7.098000
  2691. dscore: Spain_HG.SG f4: -0.000352 Z: -1.020203
  2692.  
  2693. gendstat: Cameroon_SMA.SG Turkey_N.SG -1.309
  2694. gendstat: Cameroon_SMA.SG Italy_Mesolithic.SG -0.050
  2695. gendstat: Cameroon_SMA.SG CHG -0.043
  2696. gendstat: Cameroon_SMA.SG Iran_TepeAbdulHosein_N.SG -0.383
  2697. gendstat: Cameroon_SMA.SG Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.078
  2698. gendstat: Cameroon_SMA.SG Russia_DevilsCave_N.SG -0.236
  2699. gendstat: Cameroon_SMA.SG South_Africa_400BP.SG -1.811
  2700. gendstat: Cameroon_SMA.SG Nepal_Mebrak_2125BP.SG -1.284
  2701. gendstat: Cameroon_SMA.SG Russia_Sunghir_UP.SG 0.087
  2702. gendstat: Cameroon_SMA.SG Russia_Kostenki14.SG -0.991
  2703. gendstat: Cameroon_SMA.SG Kazakhstan_Botai_Eneolithic.SG -0.823
  2704. gendstat: Cameroon_SMA.SG Switzerland_Bichon.SG 0.248
  2705. gendstat: Cameroon_SMA.SG Spain_HG.SG -1.020
  2706. gendstat: Turkey_N.SG Italy_Mesolithic.SG 1.232
  2707. gendstat: Turkey_N.SG CHG 1.258
  2708. gendstat: Turkey_N.SG Iran_TepeAbdulHosein_N.SG 0.994
  2709. gendstat: Turkey_N.SG Russia_Arkhangelsk_Veretye_Mesolithic.SG 1.181
  2710. gendstat: Turkey_N.SG Russia_DevilsCave_N.SG 0.834
  2711. gendstat: Turkey_N.SG South_Africa_400BP.SG 0.145
  2712. gendstat: Turkey_N.SG Nepal_Mebrak_2125BP.SG -0.184
  2713. gendstat: Turkey_N.SG Russia_Sunghir_UP.SG 1.539
  2714. gendstat: Turkey_N.SG Russia_Kostenki14.SG 0.064
  2715. gendstat: Turkey_N.SG Kazakhstan_Botai_Eneolithic.SG 0.401
  2716. gendstat: Turkey_N.SG Switzerland_Bichon.SG 1.475
  2717. gendstat: Turkey_N.SG Spain_HG.SG 0.255
  2718. gendstat: Italy_Mesolithic.SG CHG 0.008
  2719. gendstat: Italy_Mesolithic.SG Iran_TepeAbdulHosein_N.SG -0.300
  2720. gendstat: Italy_Mesolithic.SG Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.129
  2721. gendstat: Italy_Mesolithic.SG Russia_DevilsCave_N.SG -0.162
  2722. gendstat: Italy_Mesolithic.SG South_Africa_400BP.SG -0.956
  2723. gendstat: Italy_Mesolithic.SG Nepal_Mebrak_2125BP.SG -1.043
  2724. gendstat: Italy_Mesolithic.SG Russia_Sunghir_UP.SG 0.146
  2725. gendstat: Italy_Mesolithic.SG Russia_Kostenki14.SG -0.914
  2726. gendstat: Italy_Mesolithic.SG Kazakhstan_Botai_Eneolithic.SG -0.722
  2727. gendstat: Italy_Mesolithic.SG Switzerland_Bichon.SG 0.365
  2728. gendstat: Italy_Mesolithic.SG Spain_HG.SG -1.190
  2729. gendstat: CHG Iran_TepeAbdulHosein_N.SG -0.339
  2730. gendstat: CHG Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.116
  2731. gendstat: CHG Russia_DevilsCave_N.SG -0.172
  2732. gendstat: CHG South_Africa_400BP.SG -1.010
  2733. gendstat: CHG Nepal_Mebrak_2125BP.SG -1.086
  2734. gendstat: CHG Russia_Sunghir_UP.SG 0.127
  2735. gendstat: CHG Russia_Kostenki14.SG -0.875
  2736. gendstat: CHG Kazakhstan_Botai_Eneolithic.SG -0.730
  2737. gendstat: CHG Switzerland_Bichon.SG 0.276
  2738. gendstat: CHG Spain_HG.SG -0.917
  2739. gendstat: Iran_TepeAbdulHosein_N.SG Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.395
  2740. gendstat: Iran_TepeAbdulHosein_N.SG Russia_DevilsCave_N.SG 0.099
  2741. gendstat: Iran_TepeAbdulHosein_N.SG South_Africa_400BP.SG -0.827
  2742. gendstat: Iran_TepeAbdulHosein_N.SG Nepal_Mebrak_2125BP.SG -0.920
  2743. gendstat: Iran_TepeAbdulHosein_N.SG Russia_Sunghir_UP.SG 0.501
  2744. gendstat: Iran_TepeAbdulHosein_N.SG Russia_Kostenki14.SG -0.675
  2745. gendstat: Iran_TepeAbdulHosein_N.SG Kazakhstan_Botai_Eneolithic.SG -0.498
  2746. gendstat: Iran_TepeAbdulHosein_N.SG Switzerland_Bichon.SG 0.593
  2747. gendstat: Iran_TepeAbdulHosein_N.SG Spain_HG.SG -0.691
  2748. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Russia_DevilsCave_N.SG -0.265
  2749. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG South_Africa_400BP.SG -0.996
  2750. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Nepal_Mebrak_2125BP.SG -1.112
  2751. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Russia_Sunghir_UP.SG -0.012
  2752. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Russia_Kostenki14.SG -0.965
  2753. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Kazakhstan_Botai_Eneolithic.SG -0.863
  2754. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Switzerland_Bichon.SG 0.157
  2755. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Spain_HG.SG -1.030
  2756. gendstat: Russia_DevilsCave_N.SG South_Africa_400BP.SG -0.802
  2757. gendstat: Russia_DevilsCave_N.SG Nepal_Mebrak_2125BP.SG -1.205
  2758. gendstat: Russia_DevilsCave_N.SG Russia_Sunghir_UP.SG 0.304
  2759. gendstat: Russia_DevilsCave_N.SG Russia_Kostenki14.SG -0.684
  2760. gendstat: Russia_DevilsCave_N.SG Kazakhstan_Botai_Eneolithic.SG -0.554
  2761. gendstat: Russia_DevilsCave_N.SG Switzerland_Bichon.SG 0.410
  2762. gendstat: Russia_DevilsCave_N.SG Spain_HG.SG -0.623
  2763. gendstat: South_Africa_400BP.SG Nepal_Mebrak_2125BP.SG -0.328
  2764. gendstat: South_Africa_400BP.SG Russia_Sunghir_UP.SG 1.257
  2765. gendstat: South_Africa_400BP.SG Russia_Kostenki14.SG -0.053
  2766. gendstat: South_Africa_400BP.SG Kazakhstan_Botai_Eneolithic.SG 0.268
  2767. gendstat: South_Africa_400BP.SG Switzerland_Bichon.SG 1.209
  2768. gendstat: South_Africa_400BP.SG Spain_HG.SG 0.088
  2769. gendstat: Nepal_Mebrak_2125BP.SG Russia_Sunghir_UP.SG 1.256
  2770. gendstat: Nepal_Mebrak_2125BP.SG Russia_Kostenki14.SG 0.219
  2771. gendstat: Nepal_Mebrak_2125BP.SG Kazakhstan_Botai_Eneolithic.SG 0.511
  2772. gendstat: Nepal_Mebrak_2125BP.SG Switzerland_Bichon.SG 1.269
  2773. gendstat: Nepal_Mebrak_2125BP.SG Spain_HG.SG 0.347
  2774. gendstat: Russia_Sunghir_UP.SG Russia_Kostenki14.SG -1.171
  2775. gendstat: Russia_Sunghir_UP.SG Kazakhstan_Botai_Eneolithic.SG -0.960
  2776. gendstat: Russia_Sunghir_UP.SG Switzerland_Bichon.SG 0.202
  2777. gendstat: Russia_Sunghir_UP.SG Spain_HG.SG -1.268
  2778. gendstat: Russia_Kostenki14.SG Kazakhstan_Botai_Eneolithic.SG 0.270
  2779. gendstat: Russia_Kostenki14.SG Switzerland_Bichon.SG 1.132
  2780. gendstat: Russia_Kostenki14.SG Spain_HG.SG 0.127
  2781. gendstat: Kazakhstan_Botai_Eneolithic.SG Switzerland_Bichon.SG 0.968
  2782. gendstat: Kazakhstan_Botai_Eneolithic.SG Spain_HG.SG -0.174
  2783. gendstat: Switzerland_Bichon.SG Spain_HG.SG -1.397
  2784.  
  2785. worst Z-score with right hand mix
  2786. f4(Target, Fit, Base, mix of Right pops; Z: -3.477 sum: 1.000
  2787. Turkey_N.SG 0.749
  2788. Italy_Mesolithic.SG -0.243
  2789. CHG -0.304
  2790. Iran_TepeAbdulHosein_N.SG -0.142
  2791. Russia_Arkhangelsk_Veretye_Mesolithic.SG -0.337
  2792. Russia_DevilsCave_N.SG -0.374
  2793. South_Africa_400BP.SG 0.907
  2794. Nepal_Mebrak_2125BP.SG 0.439
  2795. Russia_Sunghir_UP.SG -0.485
  2796. Russia_Kostenki14.SG 0.250
  2797. Kazakhstan_Botai_Eneolithic.SG 0.321
  2798. Switzerland_Bichon.SG -0.442
  2799. Spain_HG.SG 0.662
  2800.  
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