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misnomer001

kumsay tyumen vonyuchka pass

misnomer001
Feb 9th, 2020
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  1. allsnps: YES
  2. ## qpAdm version: 1000
  3. seed: 1894807965
  4. read 1073741824 bytes
  5. read 1339052118 bytes
  6. packed geno read OK
  7. end of inpack
  8.  
  9. left pops:
  10. Kumsay_EBA
  11. Steppe_Eneolithic_VJ1001
  12. Tyumen_HG
  13.  
  14. right pops:
  15. Russia_MA1_HG
  16. EEHG
  17. WEHG
  18. Anatolia_N
  19. Russia_Shamanka_EN.SG
  20. Georgia_Satsurblia.SG
  21. Ganj_Dareh_N
  22. Onge.DG
  23. Russia_AfontovaGora3
  24. PPN
  25. Brazil_LapaDoSanto_9600BP
  26. China_Tianyuan
  27.  
  28. 0 Kumsay_EBA 4
  29. 1 Steppe_Eneolithic_VJ1001 1
  30. 2 Tyumen_HG 2
  31. 3 Russia_MA1_HG 1
  32. 4 EEHG 5
  33. 5 WEHG 36
  34. 6 Anatolia_N 23
  35. 7 Russia_Shamanka_EN.SG 10
  36. 8 Georgia_Satsurblia.SG 1
  37. 9 Ganj_Dareh_N 8
  38. 10 Onge.DG 2
  39. 11 Russia_AfontovaGora3 1
  40. 12 PPN 8
  41. 13 Brazil_LapaDoSanto_9600BP 5
  42. 14 China_Tianyuan 1
  43. jackknife block size: 0.050
  44. snps: 1150458 indivs: 108
  45. number of blocks for block jackknife: 552
  46. ## ncols: 1150458
  47. coverage: Kumsay_EBA 960872
  48. coverage: Steppe_Eneolithic_VJ1001 825542
  49. coverage: Tyumen_HG 807474
  50. coverage: Russia_MA1_HG 805960
  51. coverage: EEHG 1052093
  52. coverage: WEHG 1141246
  53. coverage: Anatolia_N 1136560
  54. coverage: Russia_Shamanka_EN.SG 1149998
  55. coverage: Georgia_Satsurblia.SG 801311
  56. coverage: Ganj_Dareh_N 1057358
  57. coverage: Onge.DG 1120748
  58. coverage: Russia_AfontovaGora3 265583
  59. coverage: PPN 835499
  60. coverage: Brazil_LapaDoSanto_9600BP 946991
  61. coverage: China_Tianyuan 885079
  62. dof (jackknife): 463.622
  63. numsnps used: 1150458
  64. codimension 1
  65. f4info:
  66. f4rank: 1 dof: 10 chisq: 14.788 tail: 0.139977872 dofdiff: 12 chisqdiff: -14.788 taildiff: 1
  67. B:
  68. scale 1.000
  69. EEHG 0.212
  70. WEHG 1.082
  71. Anatolia_N 1.560
  72. Russia_Shamanka_EN.SG 0.416
  73. Georgia_Satsurblia.SG 1.349
  74. Ganj_Dareh_N 1.499
  75. Onge.DG 0.764
  76. Russia_AfontovaGora3 -0.203
  77. PPN 1.410
  78. Brazil_LapaDoSanto_9600BP 0.091
  79. China_Tianyuan 0.699
  80. A:
  81. scale 374.629
  82. Steppe_Eneolithic_VJ1001 1.126
  83. Tyumen_HG -0.856
  84.  
  85.  
  86. full rank
  87. f4info:
  88. f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 14.788 taildiff: 0.139977872
  89. B:
  90. scale 330.962 423.659
  91. EEHG 0.296 -0.115
  92. WEHG 1.199 -0.911
  93. Anatolia_N 1.569 -1.511
  94. Russia_Shamanka_EN.SG 0.343 -0.561
  95. Georgia_Satsurblia.SG 1.235 -1.451
  96. Ganj_Dareh_N 1.488 -1.465
  97. Onge.DG 0.679 -0.939
  98. Russia_AfontovaGora3 -0.166 0.269
  99. PPN 1.489 -1.322
  100. Brazil_LapaDoSanto_9600BP 0.025 -0.223
  101. China_Tianyuan 0.669 -0.747
  102. A:
  103. scale 1.414 1.414
  104. Steppe_Eneolithic_VJ1001 1.414 0.000
  105. Tyumen_HG 0.000 1.414
  106.  
  107.  
  108. best coefficients: 0.432 0.568
  109. Jackknife mean: 0.431676146 0.568323854
  110. std. errors: 0.022 0.022
  111.  
  112. error covariance (* 1,000,000)
  113. 497 -497
  114. -497 497
  115.  
  116.  
  117. summ: Kumsay_EBA 2 0.139978 0.432 0.568 497 -497 497
  118.  
  119. fixed pat wt dof chisq tail prob
  120. 00 0 10 14.788 0.139978 0.432 0.568
  121. 01 1 11 386.102 0 1.000 0.000
  122. 10 1 11 267.947 0 0.000 1.000
  123. best pat: 00 0.139978 - -
  124. best pat: 10 4.82458e-51 chi(nested): 253.159 p-value for nested model: 5.31816e-57
  125.  
  126. coeffs: 0.432 0.568
  127.  
  128. ## dscore:: f_4(Base, Fit, Rbase, right2)
  129. ## genstat:: f_4(Base, Fit, right1, right2)
  130.  
  131. details: Steppe_Eneolithic_VJ1001 EEHG 0.000895 2.296317
  132. details: Tyumen_HG EEHG -0.000271 -0.722706
  133. dscore: EEHG f4: 0.000233 Z: 0.810143
  134.  
  135. details: Steppe_Eneolithic_VJ1001 WEHG 0.003623 8.922875
  136. details: Tyumen_HG WEHG -0.002149 -5.492967
  137. dscore: WEHG f4: 0.000343 Z: 1.141916
  138.  
  139. details: Steppe_Eneolithic_VJ1001 Anatolia_N 0.004741 11.474002
  140. details: Tyumen_HG Anatolia_N -0.003566 -9.119426
  141. dscore: Anatolia_N f4: 0.000021 Z: 0.068906
  142.  
  143. details: Steppe_Eneolithic_VJ1001 Russia_Shamanka_EN.SG 0.001036 2.511691
  144. details: Tyumen_HG Russia_Shamanka_EN.SG -0.001323 -3.275754
  145. dscore: Russia_Shamanka_EN.SG f4: -0.000304 Z: -0.970810
  146.  
  147. details: Steppe_Eneolithic_VJ1001 Georgia_Satsurblia.SG 0.003732 9.267448
  148. details: Tyumen_HG Georgia_Satsurblia.SG -0.003424 -9.570758
  149. dscore: Georgia_Satsurblia.SG f4: -0.000334 Z: -1.135948
  150.  
  151. details: Steppe_Eneolithic_VJ1001 Ganj_Dareh_N 0.004497 10.485505
  152. details: Tyumen_HG Ganj_Dareh_N -0.003458 -9.274795
  153. dscore: Ganj_Dareh_N f4: -0.000023 Z: -0.074363
  154.  
  155. details: Steppe_Eneolithic_VJ1001 Onge.DG 0.002052 4.819431
  156. details: Tyumen_HG Onge.DG -0.002217 -5.399104
  157. dscore: Onge.DG f4: -0.000373 Z: -1.179572
  158.  
  159. details: Steppe_Eneolithic_VJ1001 Russia_AfontovaGora3 -0.000502 -2.096719
  160. details: Tyumen_HG Russia_AfontovaGora3 0.000635 2.519164
  161. dscore: Russia_AfontovaGora3 f4: 0.000144 Z: 0.742524
  162.  
  163. details: Steppe_Eneolithic_VJ1001 PPN 0.004499 10.647044
  164. details: Tyumen_HG PPN -0.003121 -7.521814
  165. dscore: PPN f4: 0.000169 Z: 0.531387
  166.  
  167. details: Steppe_Eneolithic_VJ1001 Brazil_LapaDoSanto_9600BP 0.000075 0.178803
  168. details: Tyumen_HG Brazil_LapaDoSanto_9600BP -0.000527 -1.306119
  169. dscore: Brazil_LapaDoSanto_9600BP f4: -0.000267 Z: -0.862078
  170.  
  171. details: Steppe_Eneolithic_VJ1001 China_Tianyuan 0.002022 4.460258
  172. details: Tyumen_HG China_Tianyuan -0.001764 -4.008826
  173. dscore: China_Tianyuan f4: -0.000129 Z: -0.381093
  174.  
  175. gendstat: Russia_MA1_HG EEHG 0.810
  176. gendstat: Russia_MA1_HG WEHG 1.142
  177. gendstat: Russia_MA1_HG Anatolia_N 0.069
  178. gendstat: Russia_MA1_HG Russia_Shamanka_EN.SG -0.971
  179. gendstat: Russia_MA1_HG Georgia_Satsurblia.SG -1.136
  180. gendstat: Russia_MA1_HG Ganj_Dareh_N -0.074
  181. gendstat: Russia_MA1_HG Onge.DG -1.180
  182. gendstat: Russia_MA1_HG Russia_AfontovaGora3 0.743
  183. gendstat: Russia_MA1_HG PPN 0.531
  184. gendstat: Russia_MA1_HG Brazil_LapaDoSanto_9600BP -0.862
  185. gendstat: Russia_MA1_HG China_Tianyuan -0.381
  186. gendstat: EEHG WEHG 0.542
  187. gendstat: EEHG Anatolia_N -0.969
  188. gendstat: EEHG Russia_Shamanka_EN.SG -2.101
  189. gendstat: EEHG Georgia_Satsurblia.SG -1.905
  190. gendstat: EEHG Ganj_Dareh_N -1.110
  191. gendstat: EEHG Onge.DG -2.168
  192. gendstat: EEHG Russia_AfontovaGora3 -0.305
  193. gendstat: EEHG PPN -0.241
  194. gendstat: EEHG Brazil_LapaDoSanto_9600BP -1.942
  195. gendstat: EEHG China_Tianyuan -1.206
  196. gendstat: WEHG Anatolia_N -1.975
  197. gendstat: WEHG Russia_Shamanka_EN.SG -2.899
  198. gendstat: WEHG Georgia_Satsurblia.SG -2.416
  199. gendstat: WEHG Ganj_Dareh_N -1.763
  200. gendstat: WEHG Onge.DG -2.755
  201. gendstat: WEHG Russia_AfontovaGora3 -0.653
  202. gendstat: WEHG PPN -0.765
  203. gendstat: WEHG Brazil_LapaDoSanto_9600BP -2.348
  204. gendstat: WEHG China_Tianyuan -1.699
  205. gendstat: Anatolia_N Russia_Shamanka_EN.SG -1.461
  206. gendstat: Anatolia_N Georgia_Satsurblia.SG -1.446
  207. gendstat: Anatolia_N Ganj_Dareh_N -0.241
  208. gendstat: Anatolia_N Onge.DG -1.650
  209. gendstat: Anatolia_N Russia_AfontovaGora3 0.399
  210. gendstat: Anatolia_N PPN 0.843
  211. gendstat: Anatolia_N Brazil_LapaDoSanto_9600BP -1.166
  212. gendstat: Anatolia_N China_Tianyuan -0.522
  213. gendstat: Russia_Shamanka_EN.SG Georgia_Satsurblia.SG -0.099
  214. gendstat: Russia_Shamanka_EN.SG Ganj_Dareh_N 1.194
  215. gendstat: Russia_Shamanka_EN.SG Onge.DG -0.295
  216. gendstat: Russia_Shamanka_EN.SG Russia_AfontovaGora3 1.400
  217. gendstat: Russia_Shamanka_EN.SG PPN 1.771
  218. gendstat: Russia_Shamanka_EN.SG Brazil_LapaDoSanto_9600BP 0.167
  219. gendstat: Russia_Shamanka_EN.SG China_Tianyuan 0.674
  220. gendstat: Georgia_Satsurblia.SG Ganj_Dareh_N 1.202
  221. gendstat: Georgia_Satsurblia.SG Onge.DG -0.135
  222. gendstat: Georgia_Satsurblia.SG Russia_AfontovaGora3 1.490
  223. gendstat: Georgia_Satsurblia.SG PPN 1.836
  224. gendstat: Georgia_Satsurblia.SG Brazil_LapaDoSanto_9600BP 0.219
  225. gendstat: Georgia_Satsurblia.SG China_Tianyuan 0.596
  226. gendstat: Ganj_Dareh_N Onge.DG -1.390
  227. gendstat: Ganj_Dareh_N Russia_AfontovaGora3 0.545
  228. gendstat: Ganj_Dareh_N PPN 0.841
  229. gendstat: Ganj_Dareh_N Brazil_LapaDoSanto_9600BP -0.946
  230. gendstat: Ganj_Dareh_N China_Tianyuan -0.360
  231. gendstat: Onge.DG Russia_AfontovaGora3 1.607
  232. gendstat: Onge.DG PPN 1.999
  233. gendstat: Onge.DG Brazil_LapaDoSanto_9600BP 0.434
  234. gendstat: Onge.DG China_Tianyuan 0.830
  235. gendstat: Russia_AfontovaGora3 PPN 0.077
  236. gendstat: Russia_AfontovaGora3 Brazil_LapaDoSanto_9600BP -1.330
  237. gendstat: Russia_AfontovaGora3 China_Tianyuan -0.818
  238. gendstat: PPN Brazil_LapaDoSanto_9600BP -1.543
  239. gendstat: PPN China_Tianyuan -0.962
  240. gendstat: Brazil_LapaDoSanto_9600BP China_Tianyuan 0.481
  241.  
  242. ##end of qpAdm: 234.853 seconds cpu 1293.509 Mbytes in use
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