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Jun 16th, 2019
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  1. mapper = LinearColorMapper(palette=Magma256, high=df_complete.score.max(), low=df_complete.score.min())
  2.  
  3. TOOLS = "hover, save, pan, box_zoom, undo, redo, reset, wheel_zoom"
  4.  
  5. p = figure(title="Heatmap of Sites", x_range=Position, y_range=Values,
  6. x_axis_location="above", plot_width=900, plot_height=400,
  7. tools=TOOLS, toolbar_location='below',
  8. tooltips=[('Position','@Position'),('Score', '@score'), ('Sequence', '@Sequence')])
  9.  
  10. p.grid.grid_line_color = None
  11. p.axis.axis_line_color = None
  12. p.axis.major_tick_line_color = None
  13. p.axis.major_label_text_font_size = "8pt"
  14. p.axis.major_label_standoff = 0
  15. p.xaxis.major_label_orientation = pi / 3
  16. p.xaxis.ticker = ContinuousTicker(desired_num_ticks = 50) ###
  17.  
  18. p.rect(x="Position", y="Values", width=1, height=1,
  19. source=df_complete,
  20. fill_color={'field':'score', 'transform' : mapper},
  21. line_color=None)
  22.  
  23. color_bar = ColorBar(color_mapper=mapper, major_label_text_font_size="8pt",
  24. ticker=BasicTicker(),
  25. label_standoff=6, border_line_color=None, location=(0, 0))
  26.  
  27. p.add_layout(color_bar, 'right')
  28. show(p)
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