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- qpAdm: parameter file: parqpadm
- ### THE INPUT PARAMETERS
- ##PARAMETER NAME: VALUE
- popleft: left
- popright: right
- details: YES
- allsnps: YES
- inbreed: NO
- oldallsnps: NO
- S1: newpush
- S1X: newpush
- indivname: newpush.ind
- snpname: newpush.snp
- genotypename: newpush.geno
- ## qpAdm version: 1520
- seed: 2093924902
- inbreed set NO
- inbreed set NO
- tmp: /tmp/fsx.9435
- left pops:
- Iran_IA_HajjiFiruz
- Iran_HajjiFiruz_C
- Iran_BA_HajjiFiruz
- Turkmenistan_Gonur_BA_1
- right pops:
- Mbuti.DG
- Serbia_IronGates_Mesolithic
- CHG
- EHG
- China_YR_MN
- Turkey_Boncuklu_N
- Russia_Shamanka_Eneolithic.SG
- ONG.SG
- WSHG
- Turkey_N
- Tarim_EMBA1
- Russia_Samara_EBA_Yamnaya
- PPN
- Poland_Globular_Amphora
- Russia_MLBA_Sintashta
- Kyrgyzstan_Aygirdjal_BA
- codimension 1
- f4info:
- f4rank: 2 dof: 13 chisq: 7.395 tail: 0.880681747 dofdiff: 15 chisqdiff: -7.395 taildiff: 1
- B:
- scale 1.000 1.000
- Serbia_IronGates_Mesolithic 1.552 0.801
- CHG 0.379 -0.035
- EHG 1.937 -0.051
- China_YR_MN 0.433 -0.387
- Turkey_Boncuklu_N 0.574 1.492
- Russia_Shamanka_Eneolithic.SG 0.501 -0.426
- ONG.SG 0.340 -0.528
- WSHG 1.394 -0.936
- Turkey_N 0.319 1.598
- Tarim_EMBA1 1.251 -1.344
- Russia_Samara_EBA_Yamnaya 1.388 -0.095
- PPN 0.138 1.621
- Poland_Globular_Amphora 0.649 1.432
- Russia_MLBA_Sintashta 1.243 0.381
- Kyrgyzstan_Aygirdjal_BA 0.538 -1.202
- A:
- scale 214.277 352.881
- Iran_HajjiFiruz_C -0.590 0.763
- Iran_BA_HajjiFiruz 1.602 -0.006
- Turkmenistan_Gonur_BA_1 -0.295 -1.555
- full rank
- f4info:
- f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 13 chisqdiff: 7.395 taildiff: 0.880681747
- B:
- scale 251.187 135.081 205.480
- Serbia_IronGates_Mesolithic -0.543 1.693 -1.086
- CHG -0.317 0.408 -0.087
- EHG -1.690 1.855 -0.711
- China_YR_MN -0.682 0.396 0.095
- Turkey_Boncuklu_N 0.081 0.461 -1.746
- Russia_Shamanka_Eneolithic.SG -0.880 0.423 0.053
- ONG.SG -0.737 0.319 0.244
- WSHG -1.879 1.321 0.207
- Turkey_N 0.509 0.297 -1.631
- Tarim_EMBA1 -1.739 1.272 0.774
- Russia_Samara_EBA_Yamnaya -0.936 1.503 -0.235
- PPN 0.628 0.109 -1.630
- Poland_Globular_Amphora 0.185 0.620 -1.606
- Russia_MLBA_Sintashta -0.885 1.180 -0.852
- Kyrgyzstan_Aygirdjal_BA -1.030 0.615 0.932
- A:
- scale 1.732 1.732 1.732
- Iran_HajjiFiruz_C 1.732 0.000 0.000
- Iran_BA_HajjiFiruz 0.000 1.732 0.000
- Turkmenistan_Gonur_BA_1 0.000 0.000 1.732
- best coefficients: 0.514 0.235 0.251
- totmean: 0.514 0.235 0.251
- boot mean: 0.514 0.236 0.250
- std. errors: 0.067 0.059 0.072
- error covariance (* 1,000,000)
- 4551 -1417 -3134
- -1417 3453 -2036
- -3134 -2036 5170
- summ: Iran_IA_HajjiFiruz 3 0.880682 0.514 0.236 0.250 4551 -1417 -3134 3453 -2036 ...
- 5170
- fixed pat wt dof chisq tail prob
- 000 0 13 7.395 0.880682 0.514 0.235 0.251
- 001 1 14 20.309 0.120702 0.661 0.339 0.000
- 010 1 14 25.536 0.0296309 0.605 0.000 0.395
- 100 1 14 66.959 6.82267e-09 0.000 0.503 0.497
- 011 2 15 62.097 1.09578e-07 1.000 0.000 0.000
- 101 2 15 107.783 4.29138e-16 0.000 1.000 0.000
- 110 2 15 127.653 6.11849e-20 0.000 0.000 1.000
- best pat: 000 0.880682 - -
- best pat: 001 0.120702 chi(nested): 12.914 p-value for nested model: 0.000326118
- best pat: 011 1.09578e-07 chi(nested): 41.788 p-value for nested model: 1.01721e-10
- coeffs: 0.514 0.235 0.251
- ## dscore:: f_4(Base, Fit, Rbase, right2)
- ## genstat:: f_4(Base, Fit, right1, right2)
- details: Iran_HajjiFiruz_C Serbia_IronGates_Mesolithic -0.002162 -1.431067
- details: Iran_BA_HajjiFiruz Serbia_IronGates_Mesolithic 0.012535 7.006660
- details: Turkmenistan_Gonur_BA_1 Serbia_IronGates_Mesolithic -0.005285 -3.945064
- dscore: Serbia_IronGates_Mesolithic f4: 0.000511 Z: 0.375622
- details: Iran_HajjiFiruz_C CHG -0.001260 -0.706183
- details: Iran_BA_HajjiFiruz CHG 0.003024 1.462404
- details: Turkmenistan_Gonur_BA_1 CHG -0.000422 -0.260240
- dscore: CHG f4: -0.000042 Z: -0.025777
- details: Iran_HajjiFiruz_C EHG -0.006727 -4.040128
- details: Iran_BA_HajjiFiruz EHG 0.013729 6.625941
- details: Turkmenistan_Gonur_BA_1 EHG -0.003462 -2.235523
- dscore: EHG f4: -0.001095 Z: -0.710205
- details: Iran_HajjiFiruz_C China_YR_MN -0.002715 -1.623309
- details: Iran_BA_HajjiFiruz China_YR_MN 0.002930 1.555841
- details: Turkmenistan_Gonur_BA_1 China_YR_MN 0.000462 0.310228
- dscore: China_YR_MN f4: -0.000589 Z: -0.391635
- details: Iran_HajjiFiruz_C Turkey_Boncuklu_N 0.000322 0.192918
- details: Iran_BA_HajjiFiruz Turkey_Boncuklu_N 0.003415 1.779628
- details: Turkmenistan_Gonur_BA_1 Turkey_Boncuklu_N -0.008499 -5.691667
- dscore: Turkey_Boncuklu_N f4: -0.001166 Z: -0.766524
- details: Iran_HajjiFiruz_C Russia_Shamanka_Eneolithic.SG -0.003504 -2.370256
- details: Iran_BA_HajjiFiruz Russia_Shamanka_Eneolithic.SG 0.003132 1.834240
- details: Turkmenistan_Gonur_BA_1 Russia_Shamanka_Eneolithic.SG 0.000260 0.196128
- dscore: Russia_Shamanka_Eneolithic.SG f4: -0.000998 Z: -0.751156
- details: Iran_HajjiFiruz_C ONG.SG -0.002933 -1.871078
- details: Iran_BA_HajjiFiruz ONG.SG 0.002363 1.279183
- details: Turkmenistan_Gonur_BA_1 ONG.SG 0.001186 0.840031
- dscore: ONG.SG f4: -0.000653 Z: -0.458300
- details: Iran_HajjiFiruz_C WSHG -0.007481 -4.037157
- details: Iran_BA_HajjiFiruz WSHG 0.009780 4.524288
- details: Turkmenistan_Gonur_BA_1 WSHG 0.001009 0.603372
- dscore: WSHG f4: -0.001288 Z: -0.762483
- details: Iran_HajjiFiruz_C Turkey_N 0.002026 1.438558
- details: Iran_BA_HajjiFiruz Turkey_N 0.002202 1.391268
- details: Turkmenistan_Gonur_BA_1 Turkey_N -0.007939 -6.155817
- dscore: Turkey_N f4: -0.000435 Z: -0.340257
- details: Iran_HajjiFiruz_C Tarim_EMBA1 -0.006921 -3.907947
- details: Iran_BA_HajjiFiruz Tarim_EMBA1 0.009418 4.459114
- details: Turkmenistan_Gonur_BA_1 Tarim_EMBA1 0.003765 2.369581
- dscore: Tarim_EMBA1 f4: -0.000393 Z: -0.242236
- details: Iran_HajjiFiruz_C Russia_Samara_EBA_Yamnaya -0.003724 -2.542973
- details: Iran_BA_HajjiFiruz Russia_Samara_EBA_Yamnaya 0.011126 6.574110
- details: Turkmenistan_Gonur_BA_1 Russia_Samara_EBA_Yamnaya -0.001143 -0.870635
- dscore: Russia_Samara_EBA_Yamnaya f4: 0.000418 Z: 0.314462
- details: Iran_HajjiFiruz_C PPN 0.002501 1.377426
- details: Iran_BA_HajjiFiruz PPN 0.000808 0.411108
- details: Turkmenistan_Gonur_BA_1 PPN -0.007931 -4.799089
- dscore: PPN f4: -0.000517 Z: -0.316623
- details: Iran_HajjiFiruz_C Poland_Globular_Amphora 0.000735 0.436603
- details: Iran_BA_HajjiFiruz Poland_Globular_Amphora 0.004588 2.426923
- details: Turkmenistan_Gonur_BA_1 Poland_Globular_Amphora -0.007814 -5.149963
- dscore: Poland_Globular_Amphora f4: -0.000506 Z: -0.333215
- details: Iran_HajjiFiruz_C Russia_MLBA_Sintashta -0.003522 -2.604367
- details: Iran_BA_HajjiFiruz Russia_MLBA_Sintashta 0.008734 5.670638
- details: Turkmenistan_Gonur_BA_1 Russia_MLBA_Sintashta -0.004148 -3.403322
- dscore: Russia_MLBA_Sintashta f4: -0.000796 Z: -0.648802
- details: Iran_HajjiFiruz_C Kyrgyzstan_Aygirdjal_BA -0.004101 -2.298266
- details: Iran_BA_HajjiFiruz Kyrgyzstan_Aygirdjal_BA 0.004551 2.176032
- details: Turkmenistan_Gonur_BA_1 Kyrgyzstan_Aygirdjal_BA 0.004536 2.774421
- dscore: Kyrgyzstan_Aygirdjal_BA f4: 0.000104 Z: 0.063598
- gendstat: Mbuti.DG Serbia_IronGates_Mesolithic 0.376
- gendstat: Mbuti.DG CHG -0.026
- gendstat: Mbuti.DG EHG -0.710
- gendstat: Mbuti.DG China_YR_MN -0.392
- gendstat: Mbuti.DG Turkey_Boncuklu_N -0.767
- gendstat: Mbuti.DG Russia_Shamanka_Eneolithic.SG -0.751
- gendstat: Mbuti.DG ONG.SG -0.458
- gendstat: Mbuti.DG WSHG -0.762
- gendstat: Mbuti.DG Turkey_N -0.340
- gendstat: Mbuti.DG Tarim_EMBA1 -0.242
- gendstat: Mbuti.DG Russia_Samara_EBA_Yamnaya 0.314
- gendstat: Mbuti.DG PPN -0.317
- gendstat: Mbuti.DG Poland_Globular_Amphora -0.333
- gendstat: Mbuti.DG Russia_MLBA_Sintashta -0.649
- gendstat: Mbuti.DG Kyrgyzstan_Aygirdjal_BA 0.064
- gendstat: Serbia_IronGates_Mesolithic CHG -0.343
- gendstat: Serbia_IronGates_Mesolithic EHG -1.369
- gendstat: Serbia_IronGates_Mesolithic China_YR_MN -0.780
- gendstat: Serbia_IronGates_Mesolithic Turkey_Boncuklu_N -1.358
- gendstat: Serbia_IronGates_Mesolithic Russia_Shamanka_Eneolithic.SG -1.164
- gendstat: Serbia_IronGates_Mesolithic ONG.SG -0.880
- gendstat: Serbia_IronGates_Mesolithic WSHG -1.274
- gendstat: Serbia_IronGates_Mesolithic Turkey_N -0.920
- gendstat: Serbia_IronGates_Mesolithic Tarim_EMBA1 -0.626
- gendstat: Serbia_IronGates_Mesolithic Russia_Samara_EBA_Yamnaya -0.094
- gendstat: Serbia_IronGates_Mesolithic PPN -0.697
- gendstat: Serbia_IronGates_Mesolithic Poland_Globular_Amphora -0.853
- gendstat: Serbia_IronGates_Mesolithic Russia_MLBA_Sintashta -1.605
- gendstat: Serbia_IronGates_Mesolithic Kyrgyzstan_Aygirdjal_BA -0.280
- gendstat: CHG EHG -0.631
- gendstat: CHG China_YR_MN -0.310
- gendstat: CHG Turkey_Boncuklu_N -0.661
- gendstat: CHG Russia_Shamanka_Eneolithic.SG -0.585
- gendstat: CHG ONG.SG -0.367
- gendstat: CHG WSHG -0.674
- gendstat: CHG Turkey_N -0.258
- gendstat: CHG Tarim_EMBA1 -0.200
- gendstat: CHG Russia_Samara_EBA_Yamnaya 0.317
- gendstat: CHG PPN -0.243
- gendstat: CHG Poland_Globular_Amphora -0.275
- gendstat: CHG Russia_MLBA_Sintashta -0.546
- gendstat: CHG Kyrgyzstan_Aygirdjal_BA 0.083
- gendstat: EHG China_YR_MN 0.340
- gendstat: EHG Turkey_Boncuklu_N -0.046
- gendstat: EHG Russia_Shamanka_Eneolithic.SG 0.072
- gendstat: EHG ONG.SG 0.294
- gendstat: EHG WSHG -0.140
- gendstat: EHG Turkey_N 0.495
- gendstat: EHG Tarim_EMBA1 0.527
- gendstat: EHG Russia_Samara_EBA_Yamnaya 1.326
- gendstat: EHG PPN 0.331
- gendstat: EHG Poland_Globular_Amphora 0.395
- gendstat: EHG Russia_MLBA_Sintashta 0.275
- gendstat: EHG Kyrgyzstan_Aygirdjal_BA 0.785
- gendstat: China_YR_MN Turkey_Boncuklu_N -0.352
- gendstat: China_YR_MN Russia_Shamanka_Eneolithic.SG -0.400
- gendstat: China_YR_MN ONG.SG -0.048
- gendstat: China_YR_MN WSHG -0.425
- gendstat: China_YR_MN Turkey_N 0.108
- gendstat: China_YR_MN Tarim_EMBA1 0.127
- gendstat: China_YR_MN Russia_Samara_EBA_Yamnaya 0.711
- gendstat: China_YR_MN PPN 0.039
- gendstat: China_YR_MN Poland_Globular_Amphora 0.054
- gendstat: China_YR_MN Russia_MLBA_Sintashta -0.159
- gendstat: China_YR_MN Kyrgyzstan_Aygirdjal_BA 0.415
- gendstat: Turkey_Boncuklu_N Russia_Shamanka_Eneolithic.SG 0.113
- gendstat: Turkey_Boncuklu_N ONG.SG 0.339
- gendstat: Turkey_Boncuklu_N WSHG -0.070
- gendstat: Turkey_Boncuklu_N Turkey_N 0.727
- gendstat: Turkey_Boncuklu_N Tarim_EMBA1 0.457
- gendstat: Turkey_Boncuklu_N Russia_Samara_EBA_Yamnaya 1.203
- gendstat: Turkey_Boncuklu_N PPN 0.419
- gendstat: Turkey_Boncuklu_N Poland_Globular_Amphora 0.513
- gendstat: Turkey_Boncuklu_N Russia_MLBA_Sintashta 0.333
- gendstat: Turkey_Boncuklu_N Kyrgyzstan_Aygirdjal_BA 0.772
- gendstat: Russia_Shamanka_Eneolithic.SG ONG.SG 0.291
- gendstat: Russia_Shamanka_Eneolithic.SG WSHG -0.194
- gendstat: Russia_Shamanka_Eneolithic.SG Turkey_N 0.447
- gendstat: Russia_Shamanka_Eneolithic.SG Tarim_EMBA1 0.450
- gendstat: Russia_Shamanka_Eneolithic.SG Russia_Samara_EBA_Yamnaya 1.152
- gendstat: Russia_Shamanka_Eneolithic.SG PPN 0.285
- gendstat: Russia_Shamanka_Eneolithic.SG Poland_Globular_Amphora 0.338
- gendstat: Russia_Shamanka_Eneolithic.SG Russia_MLBA_Sintashta 0.178
- gendstat: Russia_Shamanka_Eneolithic.SG Kyrgyzstan_Aygirdjal_BA 0.714
- gendstat: ONG.SG WSHG -0.381
- gendstat: ONG.SG Turkey_N 0.163
- gendstat: ONG.SG Tarim_EMBA1 0.171
- gendstat: ONG.SG Russia_Samara_EBA_Yamnaya 0.799
- gendstat: ONG.SG PPN 0.078
- gendstat: ONG.SG Poland_Globular_Amphora 0.096
- gendstat: ONG.SG Russia_MLBA_Sintashta -0.117
- gendstat: ONG.SG Kyrgyzstan_Aygirdjal_BA 0.468
- gendstat: WSHG Turkey_N 0.540
- gendstat: WSHG Tarim_EMBA1 0.632
- gendstat: WSHG Russia_Samara_EBA_Yamnaya 1.254
- gendstat: WSHG PPN 0.398
- gendstat: WSHG Poland_Globular_Amphora 0.465
- gendstat: WSHG Russia_MLBA_Sintashta 0.373
- gendstat: WSHG Kyrgyzstan_Aygirdjal_BA 0.851
- gendstat: Turkey_N Tarim_EMBA1 0.027
- gendstat: Turkey_N Russia_Samara_EBA_Yamnaya 0.807
- gendstat: Turkey_N PPN -0.064
- gendstat: Turkey_N Poland_Globular_Amphora -0.068
- gendstat: Turkey_N Russia_MLBA_Sintashta -0.446
- gendstat: Turkey_N Kyrgyzstan_Aygirdjal_BA 0.366
- gendstat: Tarim_EMBA1 Russia_Samara_EBA_Yamnaya 0.625
- gendstat: Tarim_EMBA1 PPN -0.064
- gendstat: Tarim_EMBA1 Poland_Globular_Amphora -0.069
- gendstat: Tarim_EMBA1 Russia_MLBA_Sintashta -0.309
- gendstat: Tarim_EMBA1 Kyrgyzstan_Aygirdjal_BA 0.327
- gendstat: Russia_Samara_EBA_Yamnaya PPN -0.599
- gendstat: Russia_Samara_EBA_Yamnaya Poland_Globular_Amphora -0.721
- gendstat: Russia_Samara_EBA_Yamnaya Russia_MLBA_Sintashta -1.528
- gendstat: Russia_Samara_EBA_Yamnaya Kyrgyzstan_Aygirdjal_BA -0.230
- gendstat: PPN Poland_Globular_Amphora 0.008
- gendstat: PPN Russia_MLBA_Sintashta -0.196
- gendstat: PPN Kyrgyzstan_Aygirdjal_BA 0.330
- gendstat: Poland_Globular_Amphora Russia_MLBA_Sintashta -0.270
- gendstat: Poland_Globular_Amphora Kyrgyzstan_Aygirdjal_BA 0.374
- gendstat: Russia_MLBA_Sintashta Kyrgyzstan_Aygirdjal_BA 0.693
- removing /tmp/fsx.9435
- ##end of qpAdm: 20.667 seconds cpu 1.278 Mbytes in use
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