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misnomer001

firuz_ia = c + ba + bmac pass

Aug 7th, 2022
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  1. qpAdm: parameter file: parqpadm
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. popleft: left
  5. popright: right
  6. details: YES
  7. allsnps: YES
  8. inbreed: NO
  9. oldallsnps: NO
  10. S1: newpush
  11. S1X: newpush
  12. indivname: newpush.ind
  13. snpname: newpush.snp
  14. genotypename: newpush.geno
  15. ## qpAdm version: 1520
  16. seed: 2093924902
  17. inbreed set NO
  18. inbreed set NO
  19. tmp: /tmp/fsx.9435
  20.  
  21. left pops:
  22. Iran_IA_HajjiFiruz
  23. Iran_HajjiFiruz_C
  24. Iran_BA_HajjiFiruz
  25. Turkmenistan_Gonur_BA_1
  26.  
  27. right pops:
  28. Mbuti.DG
  29. Serbia_IronGates_Mesolithic
  30. CHG
  31. EHG
  32. China_YR_MN
  33. Turkey_Boncuklu_N
  34. Russia_Shamanka_Eneolithic.SG
  35. ONG.SG
  36. WSHG
  37. Turkey_N
  38. Tarim_EMBA1
  39. Russia_Samara_EBA_Yamnaya
  40. PPN
  41. Poland_Globular_Amphora
  42. Russia_MLBA_Sintashta
  43. Kyrgyzstan_Aygirdjal_BA
  44.  
  45. codimension 1
  46. f4info:
  47. f4rank: 2 dof: 13 chisq: 7.395 tail: 0.880681747 dofdiff: 15 chisqdiff: -7.395 taildiff: 1
  48. B:
  49. scale 1.000 1.000
  50. Serbia_IronGates_Mesolithic 1.552 0.801
  51. CHG 0.379 -0.035
  52. EHG 1.937 -0.051
  53. China_YR_MN 0.433 -0.387
  54. Turkey_Boncuklu_N 0.574 1.492
  55. Russia_Shamanka_Eneolithic.SG 0.501 -0.426
  56. ONG.SG 0.340 -0.528
  57. WSHG 1.394 -0.936
  58. Turkey_N 0.319 1.598
  59. Tarim_EMBA1 1.251 -1.344
  60. Russia_Samara_EBA_Yamnaya 1.388 -0.095
  61. PPN 0.138 1.621
  62. Poland_Globular_Amphora 0.649 1.432
  63. Russia_MLBA_Sintashta 1.243 0.381
  64. Kyrgyzstan_Aygirdjal_BA 0.538 -1.202
  65. A:
  66. scale 214.277 352.881
  67. Iran_HajjiFiruz_C -0.590 0.763
  68. Iran_BA_HajjiFiruz 1.602 -0.006
  69. Turkmenistan_Gonur_BA_1 -0.295 -1.555
  70.  
  71.  
  72. full rank
  73. f4info:
  74. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 13 chisqdiff: 7.395 taildiff: 0.880681747
  75. B:
  76. scale 251.187 135.081 205.480
  77. Serbia_IronGates_Mesolithic -0.543 1.693 -1.086
  78. CHG -0.317 0.408 -0.087
  79. EHG -1.690 1.855 -0.711
  80. China_YR_MN -0.682 0.396 0.095
  81. Turkey_Boncuklu_N 0.081 0.461 -1.746
  82. Russia_Shamanka_Eneolithic.SG -0.880 0.423 0.053
  83. ONG.SG -0.737 0.319 0.244
  84. WSHG -1.879 1.321 0.207
  85. Turkey_N 0.509 0.297 -1.631
  86. Tarim_EMBA1 -1.739 1.272 0.774
  87. Russia_Samara_EBA_Yamnaya -0.936 1.503 -0.235
  88. PPN 0.628 0.109 -1.630
  89. Poland_Globular_Amphora 0.185 0.620 -1.606
  90. Russia_MLBA_Sintashta -0.885 1.180 -0.852
  91. Kyrgyzstan_Aygirdjal_BA -1.030 0.615 0.932
  92. A:
  93. scale 1.732 1.732 1.732
  94. Iran_HajjiFiruz_C 1.732 0.000 0.000
  95. Iran_BA_HajjiFiruz 0.000 1.732 0.000
  96. Turkmenistan_Gonur_BA_1 0.000 0.000 1.732
  97.  
  98.  
  99. best coefficients: 0.514 0.235 0.251
  100. totmean: 0.514 0.235 0.251
  101. boot mean: 0.514 0.236 0.250
  102. std. errors: 0.067 0.059 0.072
  103.  
  104. error covariance (* 1,000,000)
  105. 4551 -1417 -3134
  106. -1417 3453 -2036
  107. -3134 -2036 5170
  108.  
  109.  
  110. summ: Iran_IA_HajjiFiruz 3 0.880682 0.514 0.236 0.250 4551 -1417 -3134 3453 -2036 ...
  111. 5170
  112.  
  113. fixed pat wt dof chisq tail prob
  114. 000 0 13 7.395 0.880682 0.514 0.235 0.251
  115. 001 1 14 20.309 0.120702 0.661 0.339 0.000
  116. 010 1 14 25.536 0.0296309 0.605 0.000 0.395
  117. 100 1 14 66.959 6.82267e-09 0.000 0.503 0.497
  118. 011 2 15 62.097 1.09578e-07 1.000 0.000 0.000
  119. 101 2 15 107.783 4.29138e-16 0.000 1.000 0.000
  120. 110 2 15 127.653 6.11849e-20 0.000 0.000 1.000
  121. best pat: 000 0.880682 - -
  122. best pat: 001 0.120702 chi(nested): 12.914 p-value for nested model: 0.000326118
  123. best pat: 011 1.09578e-07 chi(nested): 41.788 p-value for nested model: 1.01721e-10
  124.  
  125. coeffs: 0.514 0.235 0.251
  126.  
  127. ## dscore:: f_4(Base, Fit, Rbase, right2)
  128. ## genstat:: f_4(Base, Fit, right1, right2)
  129.  
  130. details: Iran_HajjiFiruz_C Serbia_IronGates_Mesolithic -0.002162 -1.431067
  131. details: Iran_BA_HajjiFiruz Serbia_IronGates_Mesolithic 0.012535 7.006660
  132. details: Turkmenistan_Gonur_BA_1 Serbia_IronGates_Mesolithic -0.005285 -3.945064
  133. dscore: Serbia_IronGates_Mesolithic f4: 0.000511 Z: 0.375622
  134.  
  135. details: Iran_HajjiFiruz_C CHG -0.001260 -0.706183
  136. details: Iran_BA_HajjiFiruz CHG 0.003024 1.462404
  137. details: Turkmenistan_Gonur_BA_1 CHG -0.000422 -0.260240
  138. dscore: CHG f4: -0.000042 Z: -0.025777
  139.  
  140. details: Iran_HajjiFiruz_C EHG -0.006727 -4.040128
  141. details: Iran_BA_HajjiFiruz EHG 0.013729 6.625941
  142. details: Turkmenistan_Gonur_BA_1 EHG -0.003462 -2.235523
  143. dscore: EHG f4: -0.001095 Z: -0.710205
  144.  
  145. details: Iran_HajjiFiruz_C China_YR_MN -0.002715 -1.623309
  146. details: Iran_BA_HajjiFiruz China_YR_MN 0.002930 1.555841
  147. details: Turkmenistan_Gonur_BA_1 China_YR_MN 0.000462 0.310228
  148. dscore: China_YR_MN f4: -0.000589 Z: -0.391635
  149.  
  150. details: Iran_HajjiFiruz_C Turkey_Boncuklu_N 0.000322 0.192918
  151. details: Iran_BA_HajjiFiruz Turkey_Boncuklu_N 0.003415 1.779628
  152. details: Turkmenistan_Gonur_BA_1 Turkey_Boncuklu_N -0.008499 -5.691667
  153. dscore: Turkey_Boncuklu_N f4: -0.001166 Z: -0.766524
  154.  
  155. details: Iran_HajjiFiruz_C Russia_Shamanka_Eneolithic.SG -0.003504 -2.370256
  156. details: Iran_BA_HajjiFiruz Russia_Shamanka_Eneolithic.SG 0.003132 1.834240
  157. details: Turkmenistan_Gonur_BA_1 Russia_Shamanka_Eneolithic.SG 0.000260 0.196128
  158. dscore: Russia_Shamanka_Eneolithic.SG f4: -0.000998 Z: -0.751156
  159.  
  160. details: Iran_HajjiFiruz_C ONG.SG -0.002933 -1.871078
  161. details: Iran_BA_HajjiFiruz ONG.SG 0.002363 1.279183
  162. details: Turkmenistan_Gonur_BA_1 ONG.SG 0.001186 0.840031
  163. dscore: ONG.SG f4: -0.000653 Z: -0.458300
  164.  
  165. details: Iran_HajjiFiruz_C WSHG -0.007481 -4.037157
  166. details: Iran_BA_HajjiFiruz WSHG 0.009780 4.524288
  167. details: Turkmenistan_Gonur_BA_1 WSHG 0.001009 0.603372
  168. dscore: WSHG f4: -0.001288 Z: -0.762483
  169.  
  170. details: Iran_HajjiFiruz_C Turkey_N 0.002026 1.438558
  171. details: Iran_BA_HajjiFiruz Turkey_N 0.002202 1.391268
  172. details: Turkmenistan_Gonur_BA_1 Turkey_N -0.007939 -6.155817
  173. dscore: Turkey_N f4: -0.000435 Z: -0.340257
  174.  
  175. details: Iran_HajjiFiruz_C Tarim_EMBA1 -0.006921 -3.907947
  176. details: Iran_BA_HajjiFiruz Tarim_EMBA1 0.009418 4.459114
  177. details: Turkmenistan_Gonur_BA_1 Tarim_EMBA1 0.003765 2.369581
  178. dscore: Tarim_EMBA1 f4: -0.000393 Z: -0.242236
  179.  
  180. details: Iran_HajjiFiruz_C Russia_Samara_EBA_Yamnaya -0.003724 -2.542973
  181. details: Iran_BA_HajjiFiruz Russia_Samara_EBA_Yamnaya 0.011126 6.574110
  182. details: Turkmenistan_Gonur_BA_1 Russia_Samara_EBA_Yamnaya -0.001143 -0.870635
  183. dscore: Russia_Samara_EBA_Yamnaya f4: 0.000418 Z: 0.314462
  184.  
  185. details: Iran_HajjiFiruz_C PPN 0.002501 1.377426
  186. details: Iran_BA_HajjiFiruz PPN 0.000808 0.411108
  187. details: Turkmenistan_Gonur_BA_1 PPN -0.007931 -4.799089
  188. dscore: PPN f4: -0.000517 Z: -0.316623
  189.  
  190. details: Iran_HajjiFiruz_C Poland_Globular_Amphora 0.000735 0.436603
  191. details: Iran_BA_HajjiFiruz Poland_Globular_Amphora 0.004588 2.426923
  192. details: Turkmenistan_Gonur_BA_1 Poland_Globular_Amphora -0.007814 -5.149963
  193. dscore: Poland_Globular_Amphora f4: -0.000506 Z: -0.333215
  194.  
  195. details: Iran_HajjiFiruz_C Russia_MLBA_Sintashta -0.003522 -2.604367
  196. details: Iran_BA_HajjiFiruz Russia_MLBA_Sintashta 0.008734 5.670638
  197. details: Turkmenistan_Gonur_BA_1 Russia_MLBA_Sintashta -0.004148 -3.403322
  198. dscore: Russia_MLBA_Sintashta f4: -0.000796 Z: -0.648802
  199.  
  200. details: Iran_HajjiFiruz_C Kyrgyzstan_Aygirdjal_BA -0.004101 -2.298266
  201. details: Iran_BA_HajjiFiruz Kyrgyzstan_Aygirdjal_BA 0.004551 2.176032
  202. details: Turkmenistan_Gonur_BA_1 Kyrgyzstan_Aygirdjal_BA 0.004536 2.774421
  203. dscore: Kyrgyzstan_Aygirdjal_BA f4: 0.000104 Z: 0.063598
  204.  
  205. gendstat: Mbuti.DG Serbia_IronGates_Mesolithic 0.376
  206. gendstat: Mbuti.DG CHG -0.026
  207. gendstat: Mbuti.DG EHG -0.710
  208. gendstat: Mbuti.DG China_YR_MN -0.392
  209. gendstat: Mbuti.DG Turkey_Boncuklu_N -0.767
  210. gendstat: Mbuti.DG Russia_Shamanka_Eneolithic.SG -0.751
  211. gendstat: Mbuti.DG ONG.SG -0.458
  212. gendstat: Mbuti.DG WSHG -0.762
  213. gendstat: Mbuti.DG Turkey_N -0.340
  214. gendstat: Mbuti.DG Tarim_EMBA1 -0.242
  215. gendstat: Mbuti.DG Russia_Samara_EBA_Yamnaya 0.314
  216. gendstat: Mbuti.DG PPN -0.317
  217. gendstat: Mbuti.DG Poland_Globular_Amphora -0.333
  218. gendstat: Mbuti.DG Russia_MLBA_Sintashta -0.649
  219. gendstat: Mbuti.DG Kyrgyzstan_Aygirdjal_BA 0.064
  220. gendstat: Serbia_IronGates_Mesolithic CHG -0.343
  221. gendstat: Serbia_IronGates_Mesolithic EHG -1.369
  222. gendstat: Serbia_IronGates_Mesolithic China_YR_MN -0.780
  223. gendstat: Serbia_IronGates_Mesolithic Turkey_Boncuklu_N -1.358
  224. gendstat: Serbia_IronGates_Mesolithic Russia_Shamanka_Eneolithic.SG -1.164
  225. gendstat: Serbia_IronGates_Mesolithic ONG.SG -0.880
  226. gendstat: Serbia_IronGates_Mesolithic WSHG -1.274
  227. gendstat: Serbia_IronGates_Mesolithic Turkey_N -0.920
  228. gendstat: Serbia_IronGates_Mesolithic Tarim_EMBA1 -0.626
  229. gendstat: Serbia_IronGates_Mesolithic Russia_Samara_EBA_Yamnaya -0.094
  230. gendstat: Serbia_IronGates_Mesolithic PPN -0.697
  231. gendstat: Serbia_IronGates_Mesolithic Poland_Globular_Amphora -0.853
  232. gendstat: Serbia_IronGates_Mesolithic Russia_MLBA_Sintashta -1.605
  233. gendstat: Serbia_IronGates_Mesolithic Kyrgyzstan_Aygirdjal_BA -0.280
  234. gendstat: CHG EHG -0.631
  235. gendstat: CHG China_YR_MN -0.310
  236. gendstat: CHG Turkey_Boncuklu_N -0.661
  237. gendstat: CHG Russia_Shamanka_Eneolithic.SG -0.585
  238. gendstat: CHG ONG.SG -0.367
  239. gendstat: CHG WSHG -0.674
  240. gendstat: CHG Turkey_N -0.258
  241. gendstat: CHG Tarim_EMBA1 -0.200
  242. gendstat: CHG Russia_Samara_EBA_Yamnaya 0.317
  243. gendstat: CHG PPN -0.243
  244. gendstat: CHG Poland_Globular_Amphora -0.275
  245. gendstat: CHG Russia_MLBA_Sintashta -0.546
  246. gendstat: CHG Kyrgyzstan_Aygirdjal_BA 0.083
  247. gendstat: EHG China_YR_MN 0.340
  248. gendstat: EHG Turkey_Boncuklu_N -0.046
  249. gendstat: EHG Russia_Shamanka_Eneolithic.SG 0.072
  250. gendstat: EHG ONG.SG 0.294
  251. gendstat: EHG WSHG -0.140
  252. gendstat: EHG Turkey_N 0.495
  253. gendstat: EHG Tarim_EMBA1 0.527
  254. gendstat: EHG Russia_Samara_EBA_Yamnaya 1.326
  255. gendstat: EHG PPN 0.331
  256. gendstat: EHG Poland_Globular_Amphora 0.395
  257. gendstat: EHG Russia_MLBA_Sintashta 0.275
  258. gendstat: EHG Kyrgyzstan_Aygirdjal_BA 0.785
  259. gendstat: China_YR_MN Turkey_Boncuklu_N -0.352
  260. gendstat: China_YR_MN Russia_Shamanka_Eneolithic.SG -0.400
  261. gendstat: China_YR_MN ONG.SG -0.048
  262. gendstat: China_YR_MN WSHG -0.425
  263. gendstat: China_YR_MN Turkey_N 0.108
  264. gendstat: China_YR_MN Tarim_EMBA1 0.127
  265. gendstat: China_YR_MN Russia_Samara_EBA_Yamnaya 0.711
  266. gendstat: China_YR_MN PPN 0.039
  267. gendstat: China_YR_MN Poland_Globular_Amphora 0.054
  268. gendstat: China_YR_MN Russia_MLBA_Sintashta -0.159
  269. gendstat: China_YR_MN Kyrgyzstan_Aygirdjal_BA 0.415
  270. gendstat: Turkey_Boncuklu_N Russia_Shamanka_Eneolithic.SG 0.113
  271. gendstat: Turkey_Boncuklu_N ONG.SG 0.339
  272. gendstat: Turkey_Boncuklu_N WSHG -0.070
  273. gendstat: Turkey_Boncuklu_N Turkey_N 0.727
  274. gendstat: Turkey_Boncuklu_N Tarim_EMBA1 0.457
  275. gendstat: Turkey_Boncuklu_N Russia_Samara_EBA_Yamnaya 1.203
  276. gendstat: Turkey_Boncuklu_N PPN 0.419
  277. gendstat: Turkey_Boncuklu_N Poland_Globular_Amphora 0.513
  278. gendstat: Turkey_Boncuklu_N Russia_MLBA_Sintashta 0.333
  279. gendstat: Turkey_Boncuklu_N Kyrgyzstan_Aygirdjal_BA 0.772
  280. gendstat: Russia_Shamanka_Eneolithic.SG ONG.SG 0.291
  281. gendstat: Russia_Shamanka_Eneolithic.SG WSHG -0.194
  282. gendstat: Russia_Shamanka_Eneolithic.SG Turkey_N 0.447
  283. gendstat: Russia_Shamanka_Eneolithic.SG Tarim_EMBA1 0.450
  284. gendstat: Russia_Shamanka_Eneolithic.SG Russia_Samara_EBA_Yamnaya 1.152
  285. gendstat: Russia_Shamanka_Eneolithic.SG PPN 0.285
  286. gendstat: Russia_Shamanka_Eneolithic.SG Poland_Globular_Amphora 0.338
  287. gendstat: Russia_Shamanka_Eneolithic.SG Russia_MLBA_Sintashta 0.178
  288. gendstat: Russia_Shamanka_Eneolithic.SG Kyrgyzstan_Aygirdjal_BA 0.714
  289. gendstat: ONG.SG WSHG -0.381
  290. gendstat: ONG.SG Turkey_N 0.163
  291. gendstat: ONG.SG Tarim_EMBA1 0.171
  292. gendstat: ONG.SG Russia_Samara_EBA_Yamnaya 0.799
  293. gendstat: ONG.SG PPN 0.078
  294. gendstat: ONG.SG Poland_Globular_Amphora 0.096
  295. gendstat: ONG.SG Russia_MLBA_Sintashta -0.117
  296. gendstat: ONG.SG Kyrgyzstan_Aygirdjal_BA 0.468
  297. gendstat: WSHG Turkey_N 0.540
  298. gendstat: WSHG Tarim_EMBA1 0.632
  299. gendstat: WSHG Russia_Samara_EBA_Yamnaya 1.254
  300. gendstat: WSHG PPN 0.398
  301. gendstat: WSHG Poland_Globular_Amphora 0.465
  302. gendstat: WSHG Russia_MLBA_Sintashta 0.373
  303. gendstat: WSHG Kyrgyzstan_Aygirdjal_BA 0.851
  304. gendstat: Turkey_N Tarim_EMBA1 0.027
  305. gendstat: Turkey_N Russia_Samara_EBA_Yamnaya 0.807
  306. gendstat: Turkey_N PPN -0.064
  307. gendstat: Turkey_N Poland_Globular_Amphora -0.068
  308. gendstat: Turkey_N Russia_MLBA_Sintashta -0.446
  309. gendstat: Turkey_N Kyrgyzstan_Aygirdjal_BA 0.366
  310. gendstat: Tarim_EMBA1 Russia_Samara_EBA_Yamnaya 0.625
  311. gendstat: Tarim_EMBA1 PPN -0.064
  312. gendstat: Tarim_EMBA1 Poland_Globular_Amphora -0.069
  313. gendstat: Tarim_EMBA1 Russia_MLBA_Sintashta -0.309
  314. gendstat: Tarim_EMBA1 Kyrgyzstan_Aygirdjal_BA 0.327
  315. gendstat: Russia_Samara_EBA_Yamnaya PPN -0.599
  316. gendstat: Russia_Samara_EBA_Yamnaya Poland_Globular_Amphora -0.721
  317. gendstat: Russia_Samara_EBA_Yamnaya Russia_MLBA_Sintashta -1.528
  318. gendstat: Russia_Samara_EBA_Yamnaya Kyrgyzstan_Aygirdjal_BA -0.230
  319. gendstat: PPN Poland_Globular_Amphora 0.008
  320. gendstat: PPN Russia_MLBA_Sintashta -0.196
  321. gendstat: PPN Kyrgyzstan_Aygirdjal_BA 0.330
  322. gendstat: Poland_Globular_Amphora Russia_MLBA_Sintashta -0.270
  323. gendstat: Poland_Globular_Amphora Kyrgyzstan_Aygirdjal_BA 0.374
  324. gendstat: Russia_MLBA_Sintashta Kyrgyzstan_Aygirdjal_BA 0.693
  325.  
  326. removing /tmp/fsx.9435
  327. ##end of qpAdm: 20.667 seconds cpu 1.278 Mbytes in use
  328.  
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