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misnomer001

Ozera - Yam_Ukr + Areni

misnomer001
Jan 5th, 2020
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  1. ### THE INPUT PARAMETERS
  2. ##PARAMETER NAME: VALUE
  3.  
  4. allsnps: YES
  5. ## qpAdm version: 810
  6. seed: 1634430784
  7.  
  8. left pops:
  9. Ukraine_Yamnaya_Ozera
  10. Ukraine_Yamnaya
  11. Armenia_C
  12.  
  13. right pops:
  14. Mbuti.DG
  15. Morocco_Iberomaurusian
  16. Ganj_Dareh_N
  17. PPN
  18. Anatolia_Meso
  19. Iberia_MN
  20. Russia_MA1.SG
  21. Georgia_Satsurblia.SG
  22. Kostenki14.SG
  23. Russia_Karelia_HG
  24. Serbia_Iron_Gates_HG
  25. Tyumen_HG
  26. Onge.DG
  27.  
  28. 0 Ukraine_Yamnaya_Ozera 1
  29. 1 Ukraine_Yamnaya 1
  30. 2 Armenia_C 5
  31. 3 Mbuti.DG 5
  32. 4 Morocco_Iberomaurusian 6
  33. 5 Ganj_Dareh_N 7
  34. 6 PPN 8
  35. 7 Anatolia_Meso 1
  36. 8 Iberia_MN 4
  37. 9 Russia_MA1.SG 1
  38. 10 Georgia_Satsurblia.SG 1
  39. 11 Kostenki14.SG 1
  40. 12 Russia_Karelia_HG 2
  41. 13 Serbia_Iron_Gates_HG 32
  42. 14 Tyumen_HG 2
  43. 15 Onge.DG 2
  44. jackknife block size: 0.050
  45. snps: 1150523 indivs: 79
  46. number of blocks for block jackknife: 552
  47. ## ncols: 1150523
  48. coverage: Ukraine_Yamnaya_Ozera 601867
  49. coverage: Ukraine_Yamnaya 801924
  50. coverage: Armenia_C 1033326
  51. coverage: Mbuti.DG 1150376
  52. coverage: Morocco_Iberomaurusian 1101342
  53. coverage: Ganj_Dareh_N 1029695
  54. coverage: PPN 835499
  55. coverage: Anatolia_Meso 989345
  56. coverage: Iberia_MN 967760
  57. coverage: Russia_MA1.SG 805960
  58. coverage: Georgia_Satsurblia.SG 801311
  59. coverage: Kostenki14.SG 1048972
  60. coverage: Russia_Karelia_HG 1010733
  61. coverage: Serbia_Iron_Gates_HG 1139259
  62. coverage: Tyumen_HG 807474
  63. coverage: Onge.DG 1120748
  64. dof (jackknife): 461.252
  65. numsnps used: 1150523
  66. codimension 1
  67. f4info:
  68. f4rank: 1 dof: 11 chisq: 10.766 tail: 0.463029989 dofdiff: 13 chisqdiff: -10.766 taildiff: 1
  69. B:
  70. scale 1.000
  71. Morocco_Iberomaurusian -0.071
  72. Ganj_Dareh_N -0.100
  73. PPN -0.710
  74. Anatolia_Meso -0.783
  75. Iberia_MN -0.530
  76. Russia_MA1.SG 1.357
  77. Georgia_Satsurblia.SG 0.403
  78. Kostenki14.SG 0.142
  79. Russia_Karelia_HG 1.617
  80. Serbia_Iron_Gates_HG 1.279
  81. Tyumen_HG 1.976
  82. Onge.DG 0.639
  83. A:
  84. scale 920.446
  85. Ukraine_Yamnaya 0.914
  86. Armenia_C -1.079
  87.  
  88.  
  89. full rank
  90. f4info:
  91. f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 11 chisqdiff: 10.766 taildiff: 0.463029989
  92. B:
  93. scale 1.000 1.000
  94. Morocco_Iberomaurusian -0.088 0.903
  95. Ganj_Dareh_N -0.116 -1.452
  96. PPN -0.727 0.356
  97. Anatolia_Meso -0.798 1.421
  98. Iberia_MN -0.551 0.286
  99. Russia_MA1.SG 1.378 0.124
  100. Georgia_Satsurblia.SG 0.388 0.212
  101. Kostenki14.SG 0.132 -2.304
  102. Russia_Karelia_HG 1.616 1.185
  103. Serbia_Iron_Gates_HG 1.271 -0.116
  104. Tyumen_HG 1.950 0.250
  105. Onge.DG 0.646 -0.008
  106. A:
  107. scale 928.469 3698.940
  108. Ukraine_Yamnaya 0.875 1.121
  109. Armenia_C -1.111 0.862
  110.  
  111.  
  112. best coefficients: 0.541 0.459
  113. Jackknife mean: 0.540882771 0.459117229
  114. std. errors: 0.056 0.056
  115.  
  116. error covariance (* 1000000)
  117. 3165 -3165
  118. -3165 3165
  119.  
  120.  
  121. summ: Ukraine_Yamnaya_Ozera 2 0.463030 0.541 0.459 3165 -3165 3165
  122.  
  123. fixed pat wt dof chisq tail prob
  124. 00 0 11 10.766 0.46303 0.541 0.459
  125. 01 1 12 61.905 1.0124e-08 1.000 -0.000
  126. 10 1 12 102.444 1.84607e-16 0.000 1.000
  127. best pat: 00 0.46303 - -
  128. best pat: 01 1.0124e-08 chi(nested): 51.139 p-value for nested model: 8.60706e-13
  129.  
  130. coeffs: 0.541 0.459
  131.  
  132. ## dscore:: f_4(Base, Fit, Rbase, right2)
  133. ## genstat:: f_4(Base, Fit, right1, right2)
  134.  
  135. details: Ukraine_Yamnaya Morocco_Iberomaurusian 0.000200 0.568579
  136. details: Armenia_C Morocco_Iberomaurusian 0.000321 1.065455
  137. dscore: Morocco_Iberomaurusian f4: 0.000255 Z: 0.876240
  138.  
  139. details: Ukraine_Yamnaya Ganj_Dareh_N -0.000520 -1.285213
  140. details: Armenia_C Ganj_Dareh_N -0.000185 -0.572558
  141. dscore: Ganj_Dareh_N f4: -0.000366 Z: -1.117223
  142.  
  143. details: Ukraine_Yamnaya PPN -0.000554 -1.360776
  144. details: Armenia_C PPN 0.000965 2.867153
  145. dscore: PPN f4: 0.000143 Z: 0.422360
  146.  
  147. details: Ukraine_Yamnaya Anatolia_Meso -0.000286 -0.591000
  148. details: Armenia_C Anatolia_Meso 0.001308 3.195283
  149. dscore: Anatolia_Meso f4: 0.000445 Z: 1.098621
  150.  
  151. details: Ukraine_Yamnaya Iberia_MN -0.000405 -1.037102
  152. details: Armenia_C Iberia_MN 0.000740 2.299617
  153. dscore: Iberia_MN f4: 0.000120 Z: 0.375389
  154.  
  155. details: Ukraine_Yamnaya Russia_MA1.SG 0.001348 3.137620
  156. details: Armenia_C Russia_MA1.SG -0.001621 -4.294991
  157. dscore: Russia_MA1.SG f4: -0.000014 Z: -0.038770
  158.  
  159. details: Ukraine_Yamnaya Georgia_Satsurblia.SG 0.000440 1.069640
  160. details: Armenia_C Georgia_Satsurblia.SG -0.000406 -1.070845
  161. dscore: Georgia_Satsurblia.SG f4: 0.000052 Z: 0.145056
  162.  
  163. details: Ukraine_Yamnaya Kostenki14.SG -0.000568 -1.295992
  164. details: Armenia_C Kostenki14.SG -0.000697 -1.828660
  165. dscore: Kostenki14.SG f4: -0.000627 Z: -1.709093
  166.  
  167. details: Ukraine_Yamnaya Russia_Karelia_HG 0.001903 3.856097
  168. details: Armenia_C Russia_Karelia_HG -0.001651 -3.929928
  169. dscore: Russia_Karelia_HG f4: 0.000273 Z: 0.659374
  170.  
  171. details: Ukraine_Yamnaya Serbia_Iron_Gates_HG 0.001191 2.935507
  172. details: Armenia_C Serbia_Iron_Gates_HG -0.001532 -4.675036
  173. dscore: Serbia_Iron_Gates_HG f4: -0.000058 Z: -0.175403
  174.  
  175. details: Ukraine_Yamnaya Tyumen_HG 0.001935 3.599005
  176. details: Armenia_C Tyumen_HG -0.002266 -5.160567
  177. dscore: Tyumen_HG f4: 0.000008 Z: 0.018239
  178.  
  179. details: Ukraine_Yamnaya Onge.DG 0.000624 1.528362
  180. details: Armenia_C Onge.DG -0.000769 -2.166948
  181. dscore: Onge.DG f4: -0.000015 Z: -0.042891
  182.  
  183. gendstat: Mbuti.DG Morocco_Iberomaurusian 0.876
  184. gendstat: Mbuti.DG Ganj_Dareh_N -1.117
  185. gendstat: Mbuti.DG PPN 0.422
  186. gendstat: Mbuti.DG Anatolia_Meso 1.099
  187. gendstat: Mbuti.DG Iberia_MN 0.375
  188. gendstat: Mbuti.DG Russia_MA1.SG -0.039
  189. gendstat: Mbuti.DG Georgia_Satsurblia.SG 0.145
  190. gendstat: Mbuti.DG Kostenki14.SG -1.709
  191. gendstat: Mbuti.DG Russia_Karelia_HG 0.659
  192. gendstat: Mbuti.DG Serbia_Iron_Gates_HG -0.175
  193. gendstat: Mbuti.DG Tyumen_HG 0.018
  194. gendstat: Mbuti.DG Onge.DG -0.043
  195. gendstat: Morocco_Iberomaurusian Ganj_Dareh_N -1.864
  196. gendstat: Morocco_Iberomaurusian PPN -0.348
  197. gendstat: Morocco_Iberomaurusian Anatolia_Meso 0.492
  198. gendstat: Morocco_Iberomaurusian Iberia_MN -0.416
  199. gendstat: Morocco_Iberomaurusian Russia_MA1.SG -0.659
  200. gendstat: Morocco_Iberomaurusian Georgia_Satsurblia.SG -0.521
  201. gendstat: Morocco_Iberomaurusian Kostenki14.SG -2.220
  202. gendstat: Morocco_Iberomaurusian Russia_Karelia_HG 0.040
  203. gendstat: Morocco_Iberomaurusian Serbia_Iron_Gates_HG -0.956
  204. gendstat: Morocco_Iberomaurusian Tyumen_HG -0.544
  205. gendstat: Morocco_Iberomaurusian Onge.DG -0.752
  206. gendstat: Ganj_Dareh_N PPN 1.476
  207. gendstat: Ganj_Dareh_N Anatolia_Meso 1.953
  208. gendstat: Ganj_Dareh_N Iberia_MN 1.480
  209. gendstat: Ganj_Dareh_N Russia_MA1.SG 0.892
  210. gendstat: Ganj_Dareh_N Georgia_Satsurblia.SG 1.109
  211. gendstat: Ganj_Dareh_N Kostenki14.SG -0.654
  212. gendstat: Ganj_Dareh_N Russia_Karelia_HG 1.530
  213. gendstat: Ganj_Dareh_N Serbia_Iron_Gates_HG 0.941
  214. gendstat: Ganj_Dareh_N Tyumen_HG 0.877
  215. gendstat: Ganj_Dareh_N Onge.DG 0.959
  216. gendstat: PPN Anatolia_Meso 0.802
  217. gendstat: PPN Iberia_MN -0.077
  218. gendstat: PPN Russia_MA1.SG -0.359
  219. gendstat: PPN Georgia_Satsurblia.SG -0.234
  220. gendstat: PPN Kostenki14.SG -1.891
  221. gendstat: PPN Russia_Karelia_HG 0.292
  222. gendstat: PPN Serbia_Iron_Gates_HG -0.619
  223. gendstat: PPN Tyumen_HG -0.285
  224. gendstat: PPN Onge.DG -0.410
  225. gendstat: Anatolia_Meso Iberia_MN -0.872
  226. gendstat: Anatolia_Meso Russia_MA1.SG -0.975
  227. gendstat: Anatolia_Meso Georgia_Satsurblia.SG -0.866
  228. gendstat: Anatolia_Meso Kostenki14.SG -2.300
  229. gendstat: Anatolia_Meso Russia_Karelia_HG -0.343
  230. gendstat: Anatolia_Meso Serbia_Iron_Gates_HG -1.273
  231. gendstat: Anatolia_Meso Tyumen_HG -0.849
  232. gendstat: Anatolia_Meso Onge.DG -1.065
  233. gendstat: Iberia_MN Russia_MA1.SG -0.327
  234. gendstat: Iberia_MN Georgia_Satsurblia.SG -0.176
  235. gendstat: Iberia_MN Kostenki14.SG -1.864
  236. gendstat: Iberia_MN Russia_Karelia_HG 0.376
  237. gendstat: Iberia_MN Serbia_Iron_Gates_HG -0.649
  238. gendstat: Iberia_MN Tyumen_HG -0.252
  239. gendstat: Iberia_MN Onge.DG -0.371
  240. gendstat: Russia_MA1.SG Georgia_Satsurblia.SG 0.146
  241. gendstat: Russia_MA1.SG Kostenki14.SG -1.449
  242. gendstat: Russia_MA1.SG Russia_Karelia_HG 0.662
  243. gendstat: Russia_MA1.SG Serbia_Iron_Gates_HG -0.118
  244. gendstat: Russia_MA1.SG Tyumen_HG 0.051
  245. gendstat: Russia_MA1.SG Onge.DG -0.002
  246. gendstat: Georgia_Satsurblia.SG Kostenki14.SG -1.510
  247. gendstat: Georgia_Satsurblia.SG Russia_Karelia_HG 0.460
  248. gendstat: Georgia_Satsurblia.SG Serbia_Iron_Gates_HG -0.279
  249. gendstat: Georgia_Satsurblia.SG Tyumen_HG -0.092
  250. gendstat: Georgia_Satsurblia.SG Onge.DG -0.159
  251. gendstat: Kostenki14.SG Russia_Karelia_HG 2.010
  252. gendstat: Kostenki14.SG Serbia_Iron_Gates_HG 1.570
  253. gendstat: Kostenki14.SG Tyumen_HG 1.360
  254. gendstat: Kostenki14.SG Onge.DG 1.484
  255. gendstat: Russia_Karelia_HG Serbia_Iron_Gates_HG -0.962
  256. gendstat: Russia_Karelia_HG Tyumen_HG -0.610
  257. gendstat: Russia_Karelia_HG Onge.DG -0.670
  258. gendstat: Serbia_Iron_Gates_HG Tyumen_HG 0.165
  259. gendstat: Serbia_Iron_Gates_HG Onge.DG 0.124
  260. gendstat: Tyumen_HG Onge.DG -0.051
  261.  
  262. ## end of run
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