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  1. == 2018-01-09 10:10:53,199 easyblock.py:264 INFO This is EasyBuild 3.5.1.dev0 (framework: 3.5.1.dev0, easyblocks: 3.5.1.dev0) on host node2066.delcatty.os.
  2. == 2018-01-09 10:10:53,199 easyblock.py:270 INFO This is easyblock MakeCp from module easybuild.easyblocks.generic.makecp (/user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyblocks-3.5.1.dev0-py2.7.egg/easybuild/easyblocks/generic/makecp.pyo)
  3. == 2018-01-09 10:10:53,200 easyblock.py:815 INFO Build dir set to /tmp/vsc40023/easybuild_build/GlimmerHMM/3.0.4/foss-2016b
  4. == 2018-01-09 10:10:53,200 config.py:460 DEBUG software install path as specified by 'installpath' and 'subdir_software': /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/sandybridge/software
  5. == 2018-01-09 10:10:53,200 easyconfig.py:1688 DEBUG Determining software installation subdir for <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x22b8d50>
  6. == 2018-01-09 10:10:53,200 easyconfig.py:1694 DEBUG Obtained subdir GlimmerHMM/3.0.4-foss-2016b
  7. == 2018-01-09 10:10:53,200 easyblock.py:856 INFO Software install dir set to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/sandybridge/software/GlimmerHMM/3.0.4-foss-2016b
  8. == 2018-01-09 10:10:53,200 config.py:460 DEBUG modules install path as specified by 'installpath' and 'subdir_modules': /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/sandybridge/modules
  9. == 2018-01-09 10:10:53,200 easyblock.py:861 INFO Module install dir set to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/sandybridge/modules/all
  10. == 2018-01-09 10:10:53,201 easyblock.py:249 INFO Init completed for application name GlimmerHMM version 3.0.4
  11. == 2018-01-09 10:10:53,201 easyblock.py:2659 INFO Obtained application instance of for GlimmerHMM (easyblock: MakeCp)
  12. == 2018-01-09 10:10:53,201 easyblock.py:2672 DEBUG Skip set to False
  13. == 2018-01-09 10:10:53,201 build_log.py:233 INFO building and installing GlimmerHMM/3.0.4-foss-2016b...
  14. == 2018-01-09 10:10:53,201 easyblock.py:2438 DEBUG Not skipping fetch step (skippable: False, skip: None, skipsteps: [], module_only: False, force: True
  15. == 2018-01-09 10:10:53,201 build_log.py:233 INFO fetching files...
  16. == 2018-01-09 10:10:53,202 easyblock.py:2446 INFO Starting fetch step
  17. == 2018-01-09 10:10:53,202 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x22b8d50>
  18. == 2018-01-09 10:10:53,202 templates.py:175 DEBUG version found in easyconfig is 3.0.4
  19. == 2018-01-09 10:10:53,202 templates.py:219 DEBUG name: github_account, config: None
  20. == 2018-01-09 10:10:53,202 templates.py:219 DEBUG name: name, config: GlimmerHMM
  21. == 2018-01-09 10:10:53,202 templates.py:219 DEBUG name: version, config: 3.0.4
  22. == 2018-01-09 10:10:53,202 templates.py:219 DEBUG name: versionsuffix, config:
  23. == 2018-01-09 10:10:53,203 templates.py:219 DEBUG name: versionprefix, config:
  24. == 2018-01-09 10:10:53,203 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x22b8d50>
  25. == 2018-01-09 10:10:53,203 templates.py:175 DEBUG version found in easyconfig is 3.0.4
  26. == 2018-01-09 10:10:53,203 templates.py:219 DEBUG name: github_account, config: None
  27. == 2018-01-09 10:10:53,203 templates.py:219 DEBUG name: name, config: GlimmerHMM
  28. == 2018-01-09 10:10:53,203 templates.py:219 DEBUG name: version, config: 3.0.4
  29. == 2018-01-09 10:10:53,203 templates.py:219 DEBUG name: versionsuffix, config:
  30. == 2018-01-09 10:10:53,203 templates.py:219 DEBUG name: versionprefix, config:
  31. == 2018-01-09 10:10:53,204 easyblock.py:2452 INFO Running method fetch_step part of step fetch
  32. == 2018-01-09 10:10:53,204 easyblock.py:1557 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version
  33. == 2018-01-09 10:10:53,204 filetools.py:343 INFO Command eb found at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/bin/eb
  34. == 2018-01-09 10:10:53,205 tools.py:263 DEBUG Also considering installation prefix /kyukon/data/gent/gvo000/gvo00002/vsc40023/easybuild_easy_installed...
  35. == 2018-01-09 10:10:53,205 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyconfigs-3.5.1.dev0-py2.7.egg/easybuild/easyconfigs/easybuild/easyconfigs
  36. == 2018-01-09 10:10:53,208 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-1cmXzA/files_pr5559/easybuild/easyconfigs
  37. == 2018-01-09 10:10:53,208 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/site-packages/git/ext/gitdb/easybuild/easyconfigs
  38. == 2018-01-09 10:10:53,208 tools.py:268 DEBUG Checking for easybuild/easyconfigs at easybuild/easyconfigs
  39. == 2018-01-09 10:10:53,208 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /user/home/gent/vsc400/vsc40023/.local/python-dateutil/lib/python2.7/site-packages/python_dateutil-2.6.1-py2.7.egg/easybuild/easyconfigs
  40. == 2018-01-09 10:10:53,212 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/vsc_base-2.5.8-py2.7.egg/easybuild/easyconfigs
  41. == 2018-01-09 10:10:53,212 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyblocks-3.5.1.dev0-py2.7.egg/easybuild/easyconfigs
  42. == 2018-01-09 10:10:53,213 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyconfigs-3.5.1.dev0-py2.7.egg/easybuild/easyconfigs
  43. == 2018-01-09 10:10:53,213 tools.py:272 DEBUG Added /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyconfigs-3.5.1.dev0-py2.7.egg/easybuild/easyconfigs to list of paths for easybuild/easyconfigs
  44. == 2018-01-09 10:10:53,214 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_framework-3.5.1.dev0-py2.7.egg/easybuild/easyconfigs
  45. == 2018-01-09 10:10:53,215 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/gvo000/gvo00002/JUBE/easybuild/easyconfigs
  46. == 2018-01-09 10:10:53,215 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /user/home/gent/vsc400/vsc40023/.local/python-dateutil/lib/python2.7/site-packages/easybuild/easyconfigs
  47. == 2018-01-09 10:10:53,215 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /user/home/gent/vsc400/vsc40023/.local/keyring/lib/python2.7/site-packages/keyring-3.8/easybuild/easyconfigs
  48. == 2018-01-09 10:10:53,218 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild/easyconfigs
  49. == 2018-01-09 10:10:53,218 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /kyukon/data/gent/gvo000/gvo00002/vsc40023/easybuild/easyconfigs
  50. == 2018-01-09 10:10:53,219 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python27.zip/easybuild/easyconfigs
  51. == 2018-01-09 10:10:53,219 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/easybuild/easyconfigs
  52. == 2018-01-09 10:10:53,219 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/plat-linux2/easybuild/easyconfigs
  53. == 2018-01-09 10:10:53,219 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/lib-tk/easybuild/easyconfigs
  54. == 2018-01-09 10:10:53,219 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/lib-old/easybuild/easyconfigs
  55. == 2018-01-09 10:10:53,219 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/lib-dynload/easybuild/easyconfigs
  56. == 2018-01-09 10:10:53,219 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/site-packages/easybuild/easyconfigs
  57. == 2018-01-09 10:10:53,219 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/site-packages/pbs/easybuild/easyconfigs
  58. == 2018-01-09 10:10:53,220 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/site-packages/easybuild/easyconfigs
  59. == 2018-01-09 10:10:53,220 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/site-packages/gitdb/ext/smmap/easybuild/easyconfigs
  60. == 2018-01-09 10:10:53,220 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /kyukon/data/gent/gvo000/gvo00002/vsc40023/easybuild_easy_installed/easybuild/easyconfigs
  61. == 2018-01-09 10:10:53,227 filetools.py:1107 INFO Creating directory /user/data/gent/vsc400/vsc40023/EasyBuild/sources/g/GlimmerHMM (parents: True, set_gid: False, sticky: False)
  62. == 2018-01-09 10:10:53,232 easyblock.py:714 DEBUG Trying to download file GlimmerHMM-3.0.4.tar.gz from ftp://ccb.jhu.edu/pub/software/glimmerhmm/GlimmerHMM-3.0.4.tar.gz to /user/data/gent/vsc400/vsc40023/EasyBuild/sources/g/GlimmerHMM/GlimmerHMM-3.0.4.tar.gz ...
  63. == 2018-01-09 10:10:53,232 filetools.py:443 DEBUG Trying to download GlimmerHMM-3.0.4.tar.gz from ftp://ccb.jhu.edu/pub/software/glimmerhmm/GlimmerHMM-3.0.4.tar.gz to /user/data/gent/vsc400/vsc40023/EasyBuild/sources/g/GlimmerHMM/GlimmerHMM-3.0.4.tar.gz
  64. == 2018-01-09 10:10:53,232 filetools.py:450 DEBUG Using timeout of 10 seconds for initiating download
  65. == 2018-01-09 10:10:53,233 filetools.py:1135 DEBUG Not creating existing path /user/data/gent/vsc400/vsc40023/EasyBuild/sources/g/GlimmerHMM
  66. == 2018-01-09 10:11:03,245 filetools.py:481 WARNING IOError occurred while trying to download ftp://ccb.jhu.edu/pub/software/glimmerhmm/GlimmerHMM-3.0.4.tar.gz to /user/data/gent/vsc400/vsc40023/EasyBuild/sources/g/GlimmerHMM/GlimmerHMM-3.0.4.tar.gz: <urlopen error ftp error: timed out>
  67. == 2018-01-09 10:11:03,245 filetools.py:487 INFO Attempt 1 of downloading ftp://ccb.jhu.edu/pub/software/glimmerhmm/GlimmerHMM-3.0.4.tar.gz to /user/data/gent/vsc400/vsc40023/EasyBuild/sources/g/GlimmerHMM/GlimmerHMM-3.0.4.tar.gz failed, trying again...
  68. == 2018-01-09 10:11:13,255 filetools.py:481 WARNING IOError occurred while trying to download ftp://ccb.jhu.edu/pub/software/glimmerhmm/GlimmerHMM-3.0.4.tar.gz to /user/data/gent/vsc400/vsc40023/EasyBuild/sources/g/GlimmerHMM/GlimmerHMM-3.0.4.tar.gz: <urlopen error ftp error: timed out>
  69. == 2018-01-09 10:11:13,255 filetools.py:487 INFO Attempt 2 of downloading ftp://ccb.jhu.edu/pub/software/glimmerhmm/GlimmerHMM-3.0.4.tar.gz to /user/data/gent/vsc400/vsc40023/EasyBuild/sources/g/GlimmerHMM/GlimmerHMM-3.0.4.tar.gz failed, trying again...
  70. == 2018-01-09 10:11:23,265 filetools.py:481 WARNING IOError occurred while trying to download ftp://ccb.jhu.edu/pub/software/glimmerhmm/GlimmerHMM-3.0.4.tar.gz to /user/data/gent/vsc400/vsc40023/EasyBuild/sources/g/GlimmerHMM/GlimmerHMM-3.0.4.tar.gz: <urlopen error ftp error: timed out>
  71. == 2018-01-09 10:11:23,265 filetools.py:493 WARNING Download of ftp://ccb.jhu.edu/pub/software/glimmerhmm/GlimmerHMM-3.0.4.tar.gz to /user/data/gent/vsc400/vsc40023/EasyBuild/sources/g/GlimmerHMM/GlimmerHMM-3.0.4.tar.gz failed, done trying
  72. == 2018-01-09 10:11:23,515 build_log.py:158 ERROR EasyBuild crashed with an error (at ?:124 in __init__): Couldn't find file GlimmerHMM-3.0.4.tar.gz anywhere, and downloading it didn't work either... Paths attempted (in order): /tmp/eb-1cmXzA/files_pr5559/g/GlimmerHMM/g/GlimmerHMM/GlimmerHMM-3.0.4.tar.gz, /tmp/eb-1cmXzA/files_pr5559/g/GlimmerHMM/GlimmerHMM/GlimmerHMM-3.0.4.tar.gz, /tmp/eb-1cmXzA/files_pr5559/g/GlimmerHMM/GlimmerHMM-3.0.4.tar.gz, /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyconfigs-3.5.1.dev0-py2.7.egg/easybuild/easyconfigs/g/GlimmerHMM/GlimmerHMM-3.0.4.tar.gz, /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyconfigs-3.5.1.dev0-py2.7.egg/easybuild/easyconfigs/GlimmerHMM/GlimmerHMM-3.0.4.tar.gz, /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyconfigs-3.5.1.dev0-py2.7.egg/easybuild/easyconfigs/GlimmerHMM-3.0.4.tar.gz, /tmp/eb-1cmXzA/files_pr5559/g/GlimmerHMM/GlimmerHMM-3.0.4.tar.gz, /tmp/eb-1cmXzA/files_pr5559/GlimmerHMM/GlimmerHMM-3.0.4.tar.gz, /tmp/eb-1cmXzA/files_pr5559/GlimmerHMM-3.0.4.tar.gz, /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyconfigs-3.5.1.dev0-py2.7.egg/easybuild/easyconfigs/g/GlimmerHMM/GlimmerHMM-3.0.4.tar.gz, /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyconfigs-3.5.1.dev0-py2.7.egg/easybuild/easyconfigs/GlimmerHMM/GlimmerHMM-3.0.4.tar.gz, /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyconfigs-3.5.1.dev0-py2.7.egg/easybuild/easyconfigs/GlimmerHMM-3.0.4.tar.gz, /user/data/gent/vsc400/vsc40023/EasyBuild/sources/g/GlimmerHMM/GlimmerHMM-3.0.4.tar.gz, /user/data/gent/vsc400/vsc40023/EasyBuild/sources/GlimmerHMM/GlimmerHMM-3.0.4.tar.gz, /user/data/gent/vsc400/vsc40023/EasyBuild/sources/GlimmerHMM-3.0.4.tar.gz, /apps/gent/source/g/GlimmerHMM/GlimmerHMM-3.0.4.tar.gz, /apps/gent/source/GlimmerHMM/GlimmerHMM-3.0.4.tar.gz, /apps/gent/source/GlimmerHMM-3.0.4.tar.gz, /nfsmuk/apps/gent/source/g/GlimmerHMM/GlimmerHMM-3.0.4.tar.gz, /nfsmuk/apps/gent/source/GlimmerHMM/GlimmerHMM-3.0.4.tar.gz, /nfsmuk/apps/gent/source/GlimmerHMM-3.0.4.tar.gz, ftp://ccb.jhu.edu/pub/software/glimmerhmm/GlimmerHMM-3.0.4.tar.gz (at easybuild/framework/easyblock.py:737 in obtain_file)
  73. == 2018-01-09 10:11:23,515 easyblock.py:2685 WARNING build failed (first 300 chars): Couldn't find file GlimmerHMM-3.0.4.tar.gz anywhere, and downloading it didn't work either... Paths attempted (in order): /tmp/eb-1cmXzA/files_pr5559/g/GlimmerHMM/g/GlimmerHMM/GlimmerHMM-3.0.4.tar.gz, /tmp/eb-1cmXzA/files_pr5559/g/GlimmerHMM/GlimmerHMM/GlimmerHMM-3.0.4.tar.gz, /tmp/eb-1cmXzA/files_p
  74. == 2018-01-09 10:11:23,515 easyblock.py:279 INFO Closing log for application name GlimmerHMM version 3.0.4
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