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lamiastella

xnat with tomcat7

lamiastella
Sep 6th, 2016
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  1. $ bin/setup.sh -Ddeploy=true
  2. ...
  3. pipeline:init:
  4. xdat:version:
  5. [echo] Setting the project version
  6.  
  7. [echo] Trying to install the pipeline engine from /home/jalal/computer_vision/XNAT/xnat/pipeline-installer
  8. [echo] Setting up pipeline engine in folder:
  9. [echo] Installing /home/jalal/computer_vision/XNAT/xnat/plugin-resources/repository/xdat/jars/xdat-beans-1.6.5.jar to /home/jalal/computer_vision/XNAT/xnat/pipeline/lib
  10. [echo] Launching /home/jalal/computer_vision/XNAT/xnat/pipeline-installer/setup.sh script
  11. [exec]
  12. [exec]
  13. [exec] Using JAVA_HOME: /usr/lib/jvm/java-8-openjdk-amd64/
  14. [exec]
  15. [exec] Verify Java Version (with java -version)
  16. [exec] openjdk version "1.8.0_91"
  17. [exec] OpenJDK Runtime Environment (build 1.8.0_91-8u91-b14-3ubuntu1~15.10.1-b14)
  18. [exec] OpenJDK 64-Bit Server VM (build 25.91-b14, mixed mode)
  19. [exec] Executing /home/jalal/computer_vision/XNAT/xnat/pipeline-installer/gradlew [email protected] -PsmtpServer=mail.server -PxnatUrl=http://localhost:8080/xnat -PsiteName=XNAT -Pdestination=/home/jalal/computer_vision/XNAT/xnat/pipeline
  20. [exec] Building pipeline engine
  21. [exec]
  22. [exec] * From: /home/jalal/computer_vision/XNAT/xnat/pipeline-installer
  23. [exec] * To: /home/jalal/computer_vision/XNAT/xnat/pipeline
  24. [exec] * Email: [email protected]
  25. [exec] * Site name: XNAT
  26. [exec] * Site URL: http://localhost:8080/xnat
  27. [exec] * SMTP server: mail.server
  28. [exec]
  29. [exec]
  30. [exec] Resource folders:
  31. [exec] * /home/jalal/computer_vision/XNAT/xnat/pipeline-installer/templates/resources
  32. [exec] Script folders:
  33. [exec] * /home/jalal/computer_vision/XNAT/xnat/pipeline-installer/templates/scripts
  34. [exec] Binary folders:
  35. [exec]
  36. [exec] :copyBinaries UP-TO-DATE
  37. [exec] :copyLibs UP-TO-DATE
  38. [exec] :copyResources UP-TO-DATE
  39. [exec] :copyScripts UP-TO-DATE
  40. [exec] :copyAll UP-TO-DATE
  41. [exec]
  42. [exec] BUILD SUCCESSFUL
  43. [exec]
  44. [exec] Total time: 1.693 secs
  45. BUILD SUCCESSFUL
  46. Total time: 33 seconds
  47. Finished at: Tue Sep 06 11:13:41 CDT 2016
  48.  
  49.  
  50.  
  51. jalal@klein:~/computer_vision/XNAT/xnat$ bin/update.sh -Ddeploy=true
  52.  
  53. Using XDAT Installation: /home/jalal/computer_vision/XNAT/xnat
  54. Using JAVA_HOME: /usr/lib/jvm/java-8-openjdk-amd64/
  55.  
  56. Verify Java Version (with java -version)
  57. openjdk version "1.8.0_91"
  58. OpenJDK Runtime Environment (build 1.8.0_91-8u91-b14-3ubuntu1~15.10.1-b14)
  59. OpenJDK 64-Bit Server VM (build 25.91-b14, mixed mode)
  60.  
  61. Executing /home/jalal/computer_vision/XNAT/xnat/plugin-resources/maven-1.0.2/bin/maven xdat:update
  62. __ __
  63. | \/ |__ _Apache__ ___
  64. | |\/| / _` \ V / -_) ' \ ~ intelligent projects ~
  65. |_| |_\__,_|\_/\___|_||_| v. 1.0.2
  66.  
  67. build:start:
  68.  
  69. xdat:update:
  70. [echo] Going to try to get the version
  71. xdat:version:
  72. [echo] Setting the project version
  73. [echo] Setting project version to: 1.6.5
  74.  
  75. [echo] I should now have the version: 1.6.5
  76. xdat:testDB:
  77.  
  78. xdat:verifyPLPGSQL:
  79.  
  80. xdat:setupLib:
  81. xdat:version:
  82. [echo] Setting the project version
  83.  
  84. xdat:buildGenericExecutables:
  85. [delete] Deleting: /home/jalal/computer_vision/XNAT/xnat/plugin-resources/misc/template2.bat
  86. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/plugin-resources/misc
  87. [delete] Deleting: /home/jalal/computer_vision/XNAT/xnat/plugin-resources/misc/template2.sh
  88. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/plugin-resources/misc
  89. xdat:editGenericExecutable:
  90. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/bin
  91. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/bin
  92.  
  93. xdat:editGenericExecutable:
  94. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/bin
  95. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/bin
  96.  
  97. xdat:editGenericExecutable:
  98. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/bin
  99. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/bin
  100.  
  101. xdat:editGenericExecutable:
  102. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/bin
  103. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/bin
  104.  
  105. xdat:editGenericExecutable:
  106. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/bin
  107. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/bin
  108.  
  109. xdat:editGenericExecutable:
  110. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/bin
  111. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/bin
  112.  
  113. xdat:editGenericExecutable:
  114. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/bin
  115. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/bin
  116.  
  117. xdat:editGenericExecutable:
  118. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/bin
  119. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/bin
  120.  
  121. xdat:editGenericExecutable:
  122. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/bin
  123. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/bin
  124.  
  125. xdat:editGenericExecutable:
  126. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/bin
  127. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/bin
  128.  
  129. xdat:editGenericExecutable:
  130. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/bin
  131. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/bin
  132.  
  133. xdat:editGenericExecutable:
  134. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/bin
  135. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/bin
  136.  
  137. xdat:editGenericExecutable:
  138. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/bin
  139. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/bin
  140.  
  141.  
  142. xdat:buildDefinedExecutables:
  143. [delete] Deleting: /home/jalal/computer_vision/XNAT/xnat/plugin-resources/misc/template2.bat
  144. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/plugin-resources/misc
  145. [delete] Deleting: /home/jalal/computer_vision/XNAT/xnat/plugin-resources/misc/template2.sh
  146. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/plugin-resources/misc
  147. xdat:editDefinedExecutable:
  148. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/bin
  149. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/bin
  150.  
  151. xdat:editDefinedExecutable:
  152. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/bin
  153. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/bin
  154.  
  155. xdat:editDefinedExecutable:
  156. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/bin
  157. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/bin
  158.  
  159. xdat:editDefinedExecutable:
  160. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/bin
  161. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/bin
  162.  
  163.  
  164. xdat:buildJarExecutables:
  165. xdat:version:
  166. [echo] Setting the project version
  167.  
  168.  
  169.  
  170. xdat:clean:
  171. [delete] Deleting directory /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/target
  172.  
  173. xdat:modifyTurbine:
  174. [delete] Deleting 1 files from /home/jalal/computer_vision/XNAT/xnat/plugin-resources/plugins
  175. [delete] Deleting 39 files from /home/jalal/computer_vision/XNAT/xnat/plugin-resources/cache
  176. [delete] Deleted 27 directories from /home/jalal/computer_vision/XNAT/xnat/plugin-resources/cache
  177.  
  178. xdat:updateFiles:
  179. [echo] INCLUDE XNAT TEMPLATE: true
  180. xdat:updateFilesFromXDAT:
  181.  
  182. [echo] USING XNAT TEMPLATE
  183. xdat:updateFilesFromXNAT:
  184. [delete] Deleting directory /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/java/org/nrg/xnat
  185. [copy] Copying 587 files to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/java
  186.  
  187. xdat:updateJS:
  188.  
  189. xdat:updateCSS:
  190.  
  191. xdat:updateImages:
  192. xdat:updateFavicon:
  193.  
  194.  
  195. xdat:updateApplet:
  196. [copy] Copying 64 files to /home/jalal/computer_vision/XNAT/xnat/projects/xnat/src/applet
  197. [copy] Copying 64 files to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/applet
  198.  
  199. xdat:updateFilesFromModules:
  200. [echo] Extracting modules into project build structure.
  201. [echo] modules.default.dir: /home/jalal/computer_vision/XNAT/xnat/modules
  202. [echo] modules.default.dir.exists: false
  203. [echo] modules.custom.dir:
  204. [echo] modules.custom.dir.exists: false
  205. [echo] Didn't find a modules folder, skipping module initialization.
  206. [echo] any.module.dir.exists: false
  207.  
  208. xdat:manageProjectXML:
  209. [ManageProjectXML] Looking for project dependencies in base directory: /home/jalal/computer_vision/XNAT/xnat/projects/xnat/project-dependencies
  210. [ManageProjectXML] Processing contents of dependency file: dependencies.xml
  211. [ManageProjectXML] Creating/Replacing /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/project.xml with merged version.
  212.  
  213. xdat:copyProjectRepositoryFiles:
  214.  
  215. xdat:updateFilesFromCustom:
  216. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat
  217. [delete] Deleting: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/InstanceSettings.xml
  218. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src
  219. [delete] Deleting: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/InstanceSettings.xml
  220. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat
  221. [delete] Deleting: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/PlexiViewerSpec.xml
  222. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src
  223. [delete] Deleting: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/PlexiViewerSpec.xml
  224. xdat:manageInstanceSettings:
  225. [ManageInstanceSettings] Loading instance settings from folder: /home/jalal/computer_vision/XNAT/xnat/projects/xnat
  226. [ManageInstanceSettings] Processing settings attributes from properties file: instanceSettingsProps.properties
  227. [ManageInstanceSettings] Modules dir not found, not adding modules to instance settings.
  228.  
  229. [copy] Copying 2 files to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat
  230.  
  231. xdat:configureInstanceSettings:
  232. [echo] No explicit pipeline installer location specified, setting to /home/jalal/computer_vision/XNAT/xnat/pipeline-installer
  233. [echo] No explicit pipeline build location specified, setting to /home/jalal/computer_vision/XNAT/xnat/pipeline
  234. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src
  235. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src
  236.  
  237.  
  238. xdat:configureLog4j:
  239.  
  240. xdat:auto-update:
  241. [delete] Deleting directory /home/jalal/computer_vision/XNAT/xnat/projects/xnat/src/java/org/nrg/xdat/om/base/auto
  242. [delete] Deleting directory /home/jalal/computer_vision/XNAT/xnat/projects/xnat/src/java/org/nrg/xdat/turbine/modules/screens
  243. xdat:updateGeneratedFiles:
  244. xdat:version:
  245. [echo] Setting the project version
  246.  
  247. [java]
  248. [java]
  249. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/pipeline/display/workflowData_display.xml
  250. [java]
  251. [java]
  252. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/catalog/display/cat_catalog_display.xml
  253. [java]
  254. [java]
  255. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/catalog/display/cat_entry_display.xml
  256. [java]
  257. [java]
  258. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/catalog/display/cat_dcmCatalog_display.xml
  259. [java]
  260. [java]
  261. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/screening/display/scr_screeningAssessment_display.xml
  262. [java]
  263. [java]
  264. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/validation/display/val_protocolData_display.xml
  265. [java]
  266. [java]
  267. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_projectData_display.xml
  268. [java]
  269. [java]
  270. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/subjectData_display.xml
  271. [java]
  272. [java]
  273. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_genericData_display.xml
  274. [java]
  275. [java]
  276. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_pVisitData_display.xml
  277. [java]
  278. [java]
  279. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_subjectVariablesData_display.xml
  280. [java]
  281. [java]
  282. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/mrSessionData_display.xml
  283. [java]
  284. [java]
  285. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_mrScanData_display.xml
  286. [java]
  287. [java]
  288. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_reconstructedImageData_display.xml
  289. [java]
  290. [java]
  291. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_investigatorData_display.xml
  292. [java]
  293. [java]
  294. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_petSessionData_display.xml
  295. [java]
  296. [java]
  297. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_petmrSessionData_display.xml
  298. [java]
  299. [java]
  300. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_petScanData_display.xml
  301. [java]
  302. [java]
  303. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_regionResource_display.xml
  304. [java]
  305. [java]
  306. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_resourceCatalog_display.xml
  307. [java]
  308. [java]
  309. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_qcAssessmentData_display.xml
  310. [java]
  311. [java]
  312. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_fieldDefinitionGroup_display.xml
  313. [java]
  314. [java]
  315. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_ctSessionData_display.xml
  316. [java]
  317. [java]
  318. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_ctScanData_display.xml
  319. [java]
  320. [java]
  321. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_crSessionData_display.xml
  322. [java]
  323. [java]
  324. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_crScanData_display.xml
  325. [java]
  326. [java]
  327. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_dxSessionData_display.xml
  328. [java]
  329. [java]
  330. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_dxScanData_display.xml
  331. [java]
  332. [java]
  333. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_mgSessionData_display.xml
  334. [java]
  335. [java]
  336. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_mgScanData_display.xml
  337. [java]
  338. [java]
  339. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_ioSessionData_display.xml
  340. [java]
  341. [java]
  342. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_ioScanData_display.xml
  343. [java]
  344. [java]
  345. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_usSessionData_display.xml
  346. [java]
  347. [java]
  348. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_usScanData_display.xml
  349. [java]
  350. [java]
  351. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_ecgSessionData_display.xml
  352. [java]
  353. [java]
  354. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_ecgScanData_display.xml
  355. [java]
  356. [java]
  357. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_hdSessionData_display.xml
  358. [java]
  359. [java]
  360. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_hdScanData_display.xml
  361. [java]
  362. [java]
  363. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_epsSessionData_display.xml
  364. [java]
  365. [java]
  366. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_epsScanData_display.xml
  367. [java]
  368. [java]
  369. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_xaSessionData_display.xml
  370. [java]
  371. [java]
  372. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_xaScanData_display.xml
  373. [java]
  374. [java]
  375. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_rfSessionData_display.xml
  376. [java]
  377. [java]
  378. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_rfScanData_display.xml
  379. [java]
  380. [java]
  381. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_xa3DSessionData_display.xml
  382. [java]
  383. [java]
  384. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_xa3DScanData_display.xml
  385. [java]
  386. [java]
  387. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_dx3DCraniofacialSessionData_display.xml
  388. [java]
  389. [java]
  390. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_dx3DCraniofacialScanData_display.xml
  391. [java]
  392. [java]
  393. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_nmSessionData_display.xml
  394. [java]
  395. [java]
  396. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_nmScanData_display.xml
  397. [java]
  398. [java]
  399. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_srSessionData_display.xml
  400. [java]
  401. [java]
  402. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_srScanData_display.xml
  403. [java]
  404. [java]
  405. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_esSessionData_display.xml
  406. [java]
  407. [java]
  408. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_esScanData_display.xml
  409. [java]
  410. [java]
  411. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_esvSessionData_display.xml
  412. [java]
  413. [java]
  414. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_esvScanData_display.xml
  415. [java]
  416. [java]
  417. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_gmSessionData_display.xml
  418. [java]
  419. [java]
  420. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_gmScanData_display.xml
  421. [java]
  422. [java]
  423. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_gmvSessionData_display.xml
  424. [java]
  425. [java]
  426. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_gmvScanData_display.xml
  427. [java]
  428. [java]
  429. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_smSessionData_display.xml
  430. [java]
  431. [java]
  432. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_smScanData_display.xml
  433. [java]
  434. [java]
  435. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_xcSessionData_display.xml
  436. [java]
  437. [java]
  438. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_xcScanData_display.xml
  439. [java]
  440. [java]
  441. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_xcvSessionData_display.xml
  442. [java]
  443. [java]
  444. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_xcvScanData_display.xml
  445. [java]
  446. [java]
  447. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_opSessionData_display.xml
  448. [java]
  449. [java]
  450. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_opScanData_display.xml
  451. [java]
  452. [java]
  453. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_optSessionData_display.xml
  454. [java]
  455. [java]
  456. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_optScanData_display.xml
  457. [java]
  458. [java]
  459. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_rtSessionData_display.xml
  460. [java]
  461. [java]
  462. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_rtImageScanData_display.xml
  463. [java]
  464. [java]
  465. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_otherDicomSessionData_display.xml
  466. [java]
  467. [java]
  468. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_scScanData_display.xml
  469. [java]
  470. [java]
  471. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_segScanData_display.xml
  472. [java]
  473. [java]
  474. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_mrsScanData_display.xml
  475. [java]
  476. [java]
  477. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_voiceAudioScanData_display.xml
  478. [java]
  479. [java]
  480. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_otherDicomScanData_display.xml
  481. [java]
  482. [java]
  483. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_qcManualAssessorData_display.xml
  484. [java]
  485. [java]
  486. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_megSessionData_display.xml
  487. [java]
  488. [java]
  489. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_megScanData_display.xml
  490. [java]
  491. [java]
  492. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_eegSessionData_display.xml
  493. [java]
  494. [java]
  495. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/xnat/display/xnat_eegScanData_display.xml
  496. [java]
  497. [java]
  498. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/assessments/display/xnat_a_sideEffectsPittsburghData_display.xml
  499. [java]
  500. [java]
  501. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/assessments/display/xnat_a_ybocsData_display.xml
  502. [java]
  503. [java]
  504. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/assessments/display/xnat_a_ygtssData_display.xml
  505. [java]
  506. [java]
  507. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/assessments/display/xnat_a_updrs3Data_display.xml
  508. [java]
  509. [java]
  510. [java] File already exists: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/schemas/assessments/display/xnat_a_scidResearchData_display.xml
  511. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/sql
  512.  
  513. [delete] Deleting directory /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/java/org/nrg/xdat
  514. [copy] Copying 727 files to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/java
  515. [copy] Copying 267 files to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/base-templates
  516. [delete] Deleting 175 files from /home/jalal/computer_vision/XNAT/xnat/projects/xnat/src/java/org/nrg/xdat/om
  517. [copy] Copying 177 files to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/src/java/org/nrg/xdat/om
  518.  
  519. xdat:mergeProjectWebXML:
  520. [echo] Merge plugin-resources file with projects file: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/conf/xnat-web.xml
  521. xdat:configureRestletAutowire:
  522. [echo] Setting org.restlet.autoWire=true
  523.  
  524. [echo] Edit file: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/conf/xnat-web.xml
  525.  
  526. xdat:modifyTurbineResources:
  527. [echo] Manage file:
  528. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/conf
  529.  
  530. xdat:generateBeans:
  531. xdat:version:
  532. [echo] Setting the project version
  533.  
  534. [javac] Compiling 419 source files to /home/jalal/computer_vision/XNAT/xnat/classes
  535. warning: [options] bootstrap class path not set in conjunction with -source 1.7
  536. 1 warning
  537. [jar] Building jar: /home/jalal/computer_vision/XNAT/xnat/plugin-resources/repository/xdat/jars/xdat-beans-1.6.5.jar
  538. [jar] Building jar: /home/jalal/computer_vision/XNAT/xnat/plugin-resources/repository/xdat/jars/xdat-beans-1.6.5-source.jar
  539. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/pipeline/lib
  540.  
  541. xdat:chmod:
  542.  
  543. xdat:copyConf:
  544. [copy] Copying 26 files to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/conf
  545.  
  546. xdat:updateDeploymentMavenXML:
  547. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat
  548.  
  549. xdat:generateSQL:
  550. xdat:version:
  551. [echo] Setting the project version
  552.  
  553. [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/sql
  554.  
  555. [echo] Deploying webapp.
  556. xdat:deployWebapp:
  557. [echo] /home/jalal/computer_vision/XNAT/xnat/deployments/xnat
  558. [exec] __ __
  559. [exec] | \/ |__ _Apache__ ___
  560. [exec] | |\/| / _` \ V / -_) ' \ ~ intelligent projects ~
  561. [exec] |_| |_\__,_|\_/\___|_||_| v. 1.0.2
  562. [exec]
  563. [exec] build:start:
  564. [exec]
  565. [exec] xdat:deploy:
  566. [exec] turbine:init:
  567. [exec]
  568. [exec] turbine:check-runtime-environment:
  569. [exec]
  570. [exec] turbine:deploy:
  571. [exec] [echo] Located Application Server at TOMCAT_HOME (tomcat)
  572. [exec] java:prepare-filesystem:
  573. [exec] [mkdir] Created dir: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/target/classes
  574. [exec]
  575. [exec] java:compile:
  576. [exec] turbine:init:
  577. [exec]
  578. [exec] turbine:check-runtime-environment:
  579. [exec]
  580. [exec] turbine:java-compile:
  581. [exec] Overriding previous definition of reference to maven.compile.src.set
  582. [exec] [copy] Copying 1364 files to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/target/src
  583. [exec] [copy] Copied 6 empty directories to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/target/src
  584. [exec]
  585. [exec] [echo] Compiling to target/classes
  586. [exec] [echo]
  587. [exec] ==========================================================
  588. [exec]
  589. [exec] NOTE: Targetting JVM 1.8, classes
  590. [exec] will not run on earlier JVMs
  591. [exec]
  592. [exec] ==========================================================
  593. [exec]
  594. [exec] [javac] Compiling 1362 source files to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/target/classes
  595. [exec] Note: Some input files use or override a deprecated API.
  596. [exec] Note: Recompile with -Xlint:deprecation for details.
  597. [exec] Note: Some input files use unchecked or unsafe operations.
  598. [exec] turbine:init:
  599. [exec]
  600. [exec] turbine:check-runtime-environment:
  601. [exec]
  602. [exec] turbine:install-libs:
  603. [exec]
  604. [exec]
  605. [exec] java:jar-resources:
  606. [exec] Note: Recompile with -Xlint:unchecked for details.
  607. [exec] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/target/classes
  608. [exec]
  609. [exec] test:prepare-filesystem:
  610. [exec] [mkdir] Created dir: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/target/test-classes
  611. [exec] [mkdir] Created dir: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/target/test-reports
  612. [exec]
  613. [exec] test:test-resources:
  614. [exec]
  615. [exec] test:compile:
  616. [exec]
  617. [exec] test:test:
  618. [exec]
  619. [exec] jar:jar:
  620. [exec] [jar] Building jar: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/target/xnat-1.0-dev.jar
  621. [exec]
  622. [exec] [echo] Installing to Appserver Directory: TOMCAT_HOME/webapps/xnat, Inplace: normal
  623. [exec] [delete] Deleting directory /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  624. [exec] [mkdir] Created dir: /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  625. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  626. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  627. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  628. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  629. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  630. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  631. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  632. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  633. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  634. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  635. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  636. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  637. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  638. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  639. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  640. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  641. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  642. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  643. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  644. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  645. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  646. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  647. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  648. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  649. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  650. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  651. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  652. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  653. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  654. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  655. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  656. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  657. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  658. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  659. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  660. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  661. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  662. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  663. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  664. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  665. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  666. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  667. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  668. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  669. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  670. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  671. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  672. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  673. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  674. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  675. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  676. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  677. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  678. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  679. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  680. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  681. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  682. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  683. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  684. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  685. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  686. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  687. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  688. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  689. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  690. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  691. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  692. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  693. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  694. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  695. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  696. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  697. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  698. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  699. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  700. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  701. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  702. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
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  705. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  706. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  707. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  708. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  709. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  710. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  711. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  712. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  713. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  714. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
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  717. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  718. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  719. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  720. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  721. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  722. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  723. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  724. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
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  728. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
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  730. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  731. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  732. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  733. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  734. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  735. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  736. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
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  738. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  739. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
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  741. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  742. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  743. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
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  745. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  746. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  747. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  748. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  749. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
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  763. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  764. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  765. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  766. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
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  768. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  769. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  770. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  771. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  772. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  773. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  774. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  775. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  776. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  777. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  778. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  779. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  780. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  781. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  782. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  783. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  784. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  785. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  786. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  787. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  788. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  789. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  790. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  791. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  792. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  793. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  794. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  795. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  796. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
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  799. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  800. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
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  802. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  803. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  804. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  805. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  806. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  807. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  808. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  809. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  810. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  811. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  812. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
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  814. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  815. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  816. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/lib
  817. [exec] [copy] Copying 2 files to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/classes
  818. [exec] [copy] Copying 1691 files to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/classes
  819. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF
  820. [exec] [copy] Copying 3 files to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/conf
  821. [exec] [copy] Copying 210 files to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/scripts
  822. [exec] [copy] Copying 267 files to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/base-templates
  823. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/WEB-INF/conf
  824. [exec] [copy] Copying 1 file to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat
  825. [exec]
  826. [exec] [copy] Copying 361 files to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/resources/java
  827. [exec] [copy] Copying 2 files to /home/jalal/computer_vision/XNAT/xnat/deployments/xnat/TOMCAT_HOME/webapps/xnat/resources/sql
  828. [exec] BUILD SUCCESSFUL
  829. [exec] Total time: 9 seconds
  830. [exec] Finished at: Tue Sep 06 11:15:44 CDT 2016
  831. [exec]
  832. BUILD SUCCESSFUL
  833. Total time: 45 seconds
  834. Finished at: Tue Sep 06 11:15:44 CDT 2016
  835.  
  836. jalal@klein:~/computer_vision/XNAT/xnat$
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