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- allsnps: YES
- ## qpAdm version: 1000
- seed: 1783022790
- read 1073741824 bytes
- read 1350149235 bytes
- packed geno read OK
- end of inpack
- left pops:
- Steppe_Eneolithic
- Georgia_Kotias.SG
- Caucasus_Eneolithic
- Russia_Khvalynsk_EN
- Geoksyur_EN
- right pops:
- Mbuti.DG
- Russia_AfontovaGora3
- EEHG
- WEHG
- Anatolia_N
- Russia_Shamanka_EN.SG
- Onge.DG
- PPN
- China_Tianyuan
- Russia_MA1_HG
- Ust_Ishim.DG
- Georgia_Satsurblia.SG
- Ganj_Dareh_N
- WSHG
- 0 Steppe_Eneolithic 3
- 1 Georgia_Kotias.SG 1
- 2 Caucasus_Eneolithic 3
- 3 Russia_Khvalynsk_EN 3
- 4 Geoksyur_EN 21
- 5 Mbuti.DG 5
- 6 Russia_AfontovaGora3 1
- 7 EEHG 5
- 8 WEHG 36
- 9 Anatolia_N 23
- 10 Russia_Shamanka_EN.SG 10
- 11 Onge.DG 2
- 12 PPN 11
- 13 China_Tianyuan 1
- 14 Russia_MA1_HG 1
- 15 Ust_Ishim.DG 1
- 16 Georgia_Satsurblia.SG 1
- 17 Ganj_Dareh_N 8
- 18 WSHG 3
- jackknife block size: 0.050
- snps: 1150535 indivs: 139
- number of blocks for block jackknife: 552
- ## ncols: 1150535
- coverage: Steppe_Eneolithic 1017729
- coverage: Georgia_Kotias.SG 1149097
- coverage: Caucasus_Eneolithic 784983
- coverage: Russia_Khvalynsk_EN 758497
- coverage: Geoksyur_EN 1018577
- coverage: Mbuti.DG 1150376
- coverage: Russia_AfontovaGora3 265583
- coverage: EEHG 1052093
- coverage: WEHG 1141246
- coverage: Anatolia_N 1136560
- coverage: Russia_Shamanka_EN.SG 1149998
- coverage: Onge.DG 1120748
- coverage: PPN 847771
- coverage: China_Tianyuan 885079
- coverage: Russia_MA1_HG 805960
- coverage: Ust_Ishim.DG 1062044
- coverage: Georgia_Satsurblia.SG 801311
- coverage: Ganj_Dareh_N 1057358
- coverage: WSHG 858019
- dof (jackknife): 465.858
- numsnps used: 1150535
- codimension 1
- f4info:
- f4rank: 3 dof: 10 chisq: 13.332 tail: 0.205675065 dofdiff: 12 chisqdiff: -13.332 taildiff: 1
- B:
- scale 1.000 1.000 1.000
- Russia_AfontovaGora3 0.889 0.245 -0.332
- EEHG 2.071 0.518 0.703
- WEHG 1.330 0.576 1.579
- Anatolia_N -0.044 -0.139 1.781
- Russia_Shamanka_EN.SG 0.598 0.460 -0.488
- Onge.DG 0.346 0.062 -0.185
- PPN -0.117 -0.631 1.233
- China_Tianyuan 0.544 0.056 -0.102
- Russia_MA1_HG 1.243 0.156 -0.280
- Ust_Ishim.DG 0.273 0.260 0.068
- Georgia_Satsurblia.SG -0.501 3.234 0.635
- Ganj_Dareh_N -0.433 -1.063 -1.875
- WSHG 1.818 0.155 -0.962
- A:
- scale 323.223 1327.384 1806.172
- Georgia_Kotias.SG -1.215 1.702 -0.426
- Caucasus_Eneolithic -1.016 -0.581 1.779
- Russia_Khvalynsk_EN 0.771 -0.091 0.146
- Geoksyur_EN -0.947 -0.871 -0.795
- full rank
- f4info:
- f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 13.332 taildiff: 0.205675065
- B:
- scale 253.881 288.868 453.868 297.673
- Russia_AfontovaGora3 -0.803 -1.011 0.776 -0.854
- EEHG -1.850 -1.803 2.233 -2.040
- WEHG -1.194 -0.871 1.453 -1.518
- Anatolia_N -0.163 0.501 -0.093 -0.227
- Russia_Shamanka_EN.SG -0.429 -0.764 0.532 -0.597
- Onge.DG -0.349 -0.437 0.262 -0.360
- PPN -0.190 0.520 -0.108 0.022
- China_Tianyuan -0.564 -0.588 0.426 -0.548
- Russia_MA1_HG -1.259 -1.382 0.966 -1.238
- Ust_Ishim.DG -0.292 -0.361 0.105 -0.395
- Georgia_Satsurblia.SG 1.492 0.204 -0.716 -0.303
- Ganj_Dareh_N 0.149 -0.009 -0.582 0.795
- WSHG -1.704 -2.060 1.718 -1.597
- A:
- scale 2.000 2.000 2.000 2.000
- Georgia_Kotias.SG 2.000 0.000 0.000 0.000
- Caucasus_Eneolithic 0.000 2.000 0.000 0.000
- Russia_Khvalynsk_EN 0.000 0.000 2.000 0.000
- Geoksyur_EN 0.000 0.000 0.000 2.000
- best coefficients: 0.155 0.075 0.578 0.192
- Jackknife mean: 0.154259128 0.075483900 0.578580547 0.191676424
- std. errors: 0.036 0.042 0.016 0.034
- error covariance (* 1,000,000)
- 1322 -923 2 -401
- -923 1758 -160 -675
- 2 -160 251 -93
- -401 -675 -93 1169
- summ: Steppe_Eneolithic 4 0.205675 0.154 0.075 0.579 0.192 1322 -923 2 -401 1758 ...
- -160 -675 251 -93 1169
- fixed pat wt dof chisq tail prob
- 0000 0 10 13.332 0.205675 0.155 0.075 0.578 0.192
- 0001 1 11 41.515 1.96478e-05 0.231 0.173 0.596 0.000
- 0010 1 11 263.940 0 -40.423 34.672 0.000 6.750 infeasible
- 0100 1 11 16.385 0.12742 0.193 0.000 0.585 0.223
- 1000 1 11 33.159 0.000495811 0.000 0.174 0.581 0.245
- 0011 2 12 268.896 0 -29.211 30.211 0.000 0.000 infeasible
- 0101 2 12 57.120 7.51851e-08 0.382 0.000 0.618 0.000
- 0110 2 12 379.950 0 11.433 0.000 0.000 -10.433 infeasible
- 1001 2 12 77.194 1.41114e-11 0.000 0.404 0.596 0.000
- 1010 2 12 427.916 0 0.000 6.788 0.000 -5.788 infeasible
- 1100 2 12 57.402 6.68635e-08 0.000 0.000 0.609 0.391
- 0111 3 13 747.115 0 1.000 0.000 0.000 0.000
- 1011 3 13 795.832 0 0.000 1.000 0.000 0.000
- 1101 3 13 505.021 0 0.000 0.000 1.000 0.000
- 1110 3 13 1208.268 0 0.000 0.000 0.000 1.000
- best pat: 0000 0.205675 - -
- best pat: 0100 0.12742 chi(nested): 3.053 p-value for nested model: 0.0805962
- best pat: 1100 6.68635e-08 chi(nested): 41.017 p-value for nested model: 1.5091e-10
- best pat: 1101 1.25559e-99 chi(nested): 447.619 p-value for nested model: 2.3836e-99
- coeffs: 0.155 0.075 0.578 0.192
- ## dscore:: f_4(Base, Fit, Rbase, right2)
- ## genstat:: f_4(Base, Fit, right1, right2)
- details: Georgia_Kotias.SG Russia_AfontovaGora3 -0.003163 -12.764390
- details: Caucasus_Eneolithic Russia_AfontovaGora3 -0.003499 -13.085799
- details: Russia_Khvalynsk_EN Russia_AfontovaGora3 0.001709 7.242851
- details: Geoksyur_EN Russia_AfontovaGora3 -0.002870 -14.270989
- dscore: Russia_AfontovaGora3 f4: -0.000314 Z: -1.733664
- details: Georgia_Kotias.SG EEHG -0.007285 -15.987905
- details: Caucasus_Eneolithic EEHG -0.006243 -15.908407
- details: Russia_Khvalynsk_EN EEHG 0.004921 14.546750
- details: Geoksyur_EN EEHG -0.006854 -23.615839
- dscore: EEHG f4: -0.000064 Z: -0.231601
- details: Georgia_Kotias.SG WEHG -0.004702 -12.642125
- details: Caucasus_Eneolithic WEHG -0.003016 -8.741371
- details: Russia_Khvalynsk_EN WEHG 0.003201 10.710763
- details: Geoksyur_EN WEHG -0.005099 -21.158992
- dscore: WEHG f4: -0.000080 Z: -0.340326
- details: Georgia_Kotias.SG Anatolia_N -0.000641 -1.952927
- details: Caucasus_Eneolithic Anatolia_N 0.001735 5.672243
- details: Russia_Khvalynsk_EN Anatolia_N -0.000206 -0.842203
- details: Geoksyur_EN Anatolia_N -0.000763 -3.751754
- dscore: Anatolia_N f4: -0.000234 Z: -1.194595
- details: Georgia_Kotias.SG Russia_Shamanka_EN.SG -0.001689 -4.753386
- details: Caucasus_Eneolithic Russia_Shamanka_EN.SG -0.002645 -8.003202
- details: Russia_Khvalynsk_EN Russia_Shamanka_EN.SG 0.001171 4.314362
- details: Geoksyur_EN Russia_Shamanka_EN.SG -0.002006 -8.246461
- dscore: Russia_Shamanka_EN.SG f4: -0.000167 Z: -0.774561
- details: Georgia_Kotias.SG Onge.DG -0.001374 -3.309571
- details: Caucasus_Eneolithic Onge.DG -0.001513 -4.231717
- details: Russia_Khvalynsk_EN Onge.DG 0.000577 1.953424
- details: Geoksyur_EN Onge.DG -0.001210 -4.630104
- dscore: Onge.DG f4: -0.000224 Z: -0.908775
- details: Georgia_Kotias.SG PPN -0.000747 -2.210554
- details: Caucasus_Eneolithic PPN 0.001801 5.430546
- details: Russia_Khvalynsk_EN PPN -0.000238 -0.851398
- details: Geoksyur_EN PPN 0.000073 0.313605
- dscore: PPN f4: -0.000103 Z: -0.479269
- details: Georgia_Kotias.SG China_Tianyuan -0.002223 -4.681929
- details: Caucasus_Eneolithic China_Tianyuan -0.002035 -4.660847
- details: Russia_Khvalynsk_EN China_Tianyuan 0.000939 2.601908
- details: Geoksyur_EN China_Tianyuan -0.001841 -6.528060
- dscore: China_Tianyuan f4: -0.000306 Z: -1.080698
- details: Georgia_Kotias.SG Russia_MA1_HG -0.004959 -10.403396
- details: Caucasus_Eneolithic Russia_MA1_HG -0.004784 -11.690288
- details: Russia_Khvalynsk_EN Russia_MA1_HG 0.002128 5.934246
- details: Geoksyur_EN Russia_MA1_HG -0.004161 -13.344109
- dscore: Russia_MA1_HG f4: -0.000694 Z: -2.420965
- details: Georgia_Kotias.SG Ust_Ishim.DG -0.001150 -2.591701
- details: Caucasus_Eneolithic Ust_Ishim.DG -0.001249 -3.226999
- details: Russia_Khvalynsk_EN Ust_Ishim.DG 0.000232 0.777042
- details: Geoksyur_EN Ust_Ishim.DG -0.001327 -4.611446
- dscore: Ust_Ishim.DG f4: -0.000392 Z: -1.599439
- details: Georgia_Kotias.SG Georgia_Satsurblia.SG 0.005878 11.724685
- details: Caucasus_Eneolithic Georgia_Satsurblia.SG 0.000706 1.803753
- details: Russia_Khvalynsk_EN Georgia_Satsurblia.SG -0.001577 -4.825345
- details: Geoksyur_EN Georgia_Satsurblia.SG -0.001020 -3.592642
- dscore: Georgia_Satsurblia.SG f4: -0.000146 Z: -0.573642
- details: Georgia_Kotias.SG Ganj_Dareh_N 0.000586 1.584982
- details: Caucasus_Eneolithic Ganj_Dareh_N -0.000031 -0.095413
- details: Russia_Khvalynsk_EN Ganj_Dareh_N -0.001282 -4.980225
- details: Geoksyur_EN Ganj_Dareh_N 0.002669 11.007106
- dscore: Ganj_Dareh_N f4: -0.000141 Z: -0.667610
- details: Georgia_Kotias.SG WSHG -0.006711 -16.209416
- details: Caucasus_Eneolithic WSHG -0.007132 -16.706391
- details: Russia_Khvalynsk_EN WSHG 0.003785 10.540349
- details: Geoksyur_EN WSHG -0.005366 -17.896017
- dscore: WSHG f4: -0.000413 Z: -1.421559
- gendstat: Mbuti.DG Russia_AfontovaGora3 -1.734
- gendstat: Mbuti.DG EEHG -0.232
- gendstat: Mbuti.DG WEHG -0.340
- gendstat: Mbuti.DG Anatolia_N -1.195
- gendstat: Mbuti.DG Russia_Shamanka_EN.SG -0.775
- gendstat: Mbuti.DG Onge.DG -0.909
- gendstat: Mbuti.DG PPN -0.479
- gendstat: Mbuti.DG China_Tianyuan -1.081
- gendstat: Mbuti.DG Russia_MA1_HG -2.421
- gendstat: Mbuti.DG Ust_Ishim.DG -1.599
- gendstat: Mbuti.DG Georgia_Satsurblia.SG -0.574
- gendstat: Mbuti.DG Ganj_Dareh_N -0.668
- gendstat: Mbuti.DG WSHG -1.422
- gendstat: Russia_AfontovaGora3 EEHG 0.925
- gendstat: Russia_AfontovaGora3 WEHG 0.928
- gendstat: Russia_AfontovaGora3 Anatolia_N 0.330
- gendstat: Russia_AfontovaGora3 Russia_Shamanka_EN.SG 0.617
- gendstat: Russia_AfontovaGora3 Onge.DG 0.324
- gendstat: Russia_AfontovaGora3 PPN 0.813
- gendstat: Russia_AfontovaGora3 China_Tianyuan 0.025
- gendstat: Russia_AfontovaGora3 Russia_MA1_HG -1.365
- gendstat: Russia_AfontovaGora3 Ust_Ishim.DG -0.276
- gendstat: Russia_AfontovaGora3 Georgia_Satsurblia.SG 0.565
- gendstat: Russia_AfontovaGora3 Ganj_Dareh_N 0.686
- gendstat: Russia_AfontovaGora3 WSHG -0.364
- gendstat: EEHG WEHG -0.073
- gendstat: EEHG Anatolia_N -0.678
- gendstat: EEHG Russia_Shamanka_EN.SG -0.408
- gendstat: EEHG Onge.DG -0.517
- gendstat: EEHG PPN -0.149
- gendstat: EEHG China_Tianyuan -0.754
- gendstat: EEHG Russia_MA1_HG -2.262
- gendstat: EEHG Ust_Ishim.DG -1.039
- gendstat: EEHG Georgia_Satsurblia.SG -0.244
- gendstat: EEHG Ganj_Dareh_N -0.280
- gendstat: EEHG WSHG -1.388
- gendstat: WEHG Anatolia_N -0.892
- gendstat: WEHG Russia_Shamanka_EN.SG -0.389
- gendstat: WEHG Onge.DG -0.527
- gendstat: WEHG PPN -0.110
- gendstat: WEHG China_Tianyuan -0.767
- gendstat: WEHG Russia_MA1_HG -2.194
- gendstat: WEHG Ust_Ishim.DG -1.168
- gendstat: WEHG Georgia_Satsurblia.SG -0.221
- gendstat: WEHG Ganj_Dareh_N -0.258
- gendstat: WEHG WSHG -1.263
- gendstat: Anatolia_N Russia_Shamanka_EN.SG 0.327
- gendstat: Anatolia_N Onge.DG 0.041
- gendstat: Anatolia_N PPN 0.814
- gendstat: Anatolia_N China_Tianyuan -0.254
- gendstat: Anatolia_N Russia_MA1_HG -1.635
- gendstat: Anatolia_N Ust_Ishim.DG -0.630
- gendstat: Anatolia_N Georgia_Satsurblia.SG 0.329
- gendstat: Anatolia_N Ganj_Dareh_N 0.486
- gendstat: Anatolia_N WSHG -0.645
- gendstat: Russia_Shamanka_EN.SG Onge.DG -0.266
- gendstat: Russia_Shamanka_EN.SG PPN 0.276
- gendstat: Russia_Shamanka_EN.SG China_Tianyuan -0.530
- gendstat: Russia_Shamanka_EN.SG Russia_MA1_HG -1.902
- gendstat: Russia_Shamanka_EN.SG Ust_Ishim.DG -0.923
- gendstat: Russia_Shamanka_EN.SG Georgia_Satsurblia.SG 0.073
- gendstat: Russia_Shamanka_EN.SG Ganj_Dareh_N 0.120
- gendstat: Russia_Shamanka_EN.SG WSHG -0.941
- gendstat: Onge.DG PPN 0.474
- gendstat: Onge.DG China_Tianyuan -0.275
- gendstat: Onge.DG Russia_MA1_HG -1.460
- gendstat: Onge.DG Ust_Ishim.DG -0.614
- gendstat: Onge.DG Georgia_Satsurblia.SG 0.246
- gendstat: Onge.DG Ganj_Dareh_N 0.335
- gendstat: Onge.DG WSHG -0.598
- gendstat: PPN China_Tianyuan -0.666
- gendstat: PPN Russia_MA1_HG -1.991
- gendstat: PPN Ust_Ishim.DG -1.071
- gendstat: PPN Georgia_Satsurblia.SG -0.148
- gendstat: PPN Ganj_Dareh_N -0.175
- gendstat: PPN WSHG -1.041
- gendstat: China_Tianyuan Russia_MA1_HG -1.132
- gendstat: China_Tianyuan Ust_Ishim.DG -0.275
- gendstat: China_Tianyuan Georgia_Satsurblia.SG 0.461
- gendstat: China_Tianyuan Ganj_Dareh_N 0.561
- gendstat: China_Tianyuan WSHG -0.335
- gendstat: Russia_MA1_HG Ust_Ishim.DG 0.912
- gendstat: Russia_MA1_HG Georgia_Satsurblia.SG 1.595
- gendstat: Russia_MA1_HG Ganj_Dareh_N 1.914
- gendstat: Russia_MA1_HG WSHG 1.001
- gendstat: Ust_Ishim.DG Georgia_Satsurblia.SG 0.776
- gendstat: Ust_Ishim.DG Ganj_Dareh_N 0.935
- gendstat: Ust_Ishim.DG WSHG -0.066
- gendstat: Georgia_Satsurblia.SG Ganj_Dareh_N 0.017
- gendstat: Georgia_Satsurblia.SG WSHG -0.783
- gendstat: Ganj_Dareh_N WSHG -0.929
- ##end of qpAdm: 260.500 seconds cpu 1478.193 Mbytes in use
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