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  1. {"level":"info","msg":"Loading outputs/pubmed/baseline/pubmed19n0971.Publication.Vertex.json.gz","time":"2019-10-01T22:25:35Z"}
  2. {"level":"debug","msg":"Flushing memtable, mt.size=67516859 size of flushChan: 0\n","namespace":"badger","time":"2019-10-01T22:25:35Z"}
  3. {"level":"debug","msg":"Storing value log head: {Fid:114 Len:32 Offset:183871479}\n","namespace":"badger","time":"2019-10-01T22:25:35Z"}
  4. {"level":"info","msg":"Loaded 10000 vertices (23864/sec)","time":"2019-10-01T22:25:35Z"}
  5. {"level":"debug","msg":"LOG Compact. Added 2528947 keys. Skipped 0 keys. Iteration took: 1.171847552s","namespace":"badger","time":"2019-10-01T22:25:35Z"}
  6. {"level":"info","msg":"Loaded 20000 vertices (24864/sec)","time":"2019-10-01T22:25:35Z"}
  7. {"level":"info","msg":"Loaded 30000 vertices (24762/sec)","time":"2019-10-01T22:25:36Z"}
  8. {"level":"info","msg":"Loaded 30000 vertices (24762/sec)","time":"2019-10-01T22:25:36Z"}
  9. {"level":"info","msg":"Loading outputs/pubmed/baseline/pubmed19n0972.Publication.Vertex.json.gz","time":"2019-10-01T22:25:36Z"}
  10. {"level":"info","msg":"Loaded 8919 vertices (24724/sec)","time":"2019-10-01T22:25:36Z"}
  11. {"level":"info","msg":"Loading outputs/tcga/ACC.GeneExpression.Vertex.json.gz","time":"2019-10-01T22:25:36Z"}
  12. {"level":"debug","msg":"LOG Compact. Added 3026907 keys. Skipped 0 keys. Iteration took: 1.620517295s","namespace":"badger","time":"2019-10-01T22:25:37Z"}
  13. {"level":"info","msg":"Loaded 79 vertices (19580/sec)","time":"2019-10-01T22:25:38Z"}
  14. {"level":"info","msg":"Loading outputs/tcga/ACC.TranscriptExpression.Vertex.json.gz","time":"2019-10-01T22:25:38Z"}
  15. {"level":"debug","msg":"LOG Compact. Added 3026920 keys. Skipped 0 keys. Iteration took: 1.60400524s","namespace":"badger","time":"2019-10-01T22:25:39Z"}
  16. {"level":"debug","msg":"LOG Compact. Added 2963654 keys. Skipped 0 keys. Iteration took: 1.562186726s","namespace":"badger","time":"2019-10-01T22:25:40Z"}
  17. {"level":"debug","msg":"Discard stats: map[]","namespace":"badger","time":"2019-10-01T22:25:41Z"}
  18. {"level":"info","msg":"LOG Compact 1-\u003e2, del 16 tables, add 16 tables, took 17.220124861s\n","namespace":"badger","time":"2019-10-01T22:25:41Z"}
  19. {"level":"info","msg":"Compaction for level: 1 DONE","namespace":"badger","time":"2019-10-01T22:25:41Z"}
  20. {"level":"info","msg":"Got compaction priority: {level:2 score:1.0106367122381925 dropPrefix:[]}","namespace":"badger","time":"2019-10-01T22:25:41Z"}
  21. {"level":"info","msg":"Running for level: 2\n","namespace":"badger","time":"2019-10-01T22:25:41Z"}
  22. {"level":"debug","msg":"LOG Compact. Added 1973822 keys. Skipped 0 keys. Iteration took: 1.476133058s","namespace":"badger","time":"2019-10-01T22:25:42Z"}
  23. {"level":"debug","msg":"LOG Compact. Added 1956636 keys. Skipped 0 keys. Iteration took: 1.068663779s","namespace":"badger","time":"2019-10-01T22:25:43Z"}
  24. {"level":"debug","msg":"Discard stats: map[]","namespace":"badger","time":"2019-10-01T22:25:44Z"}
  25. {"level":"info","msg":"LOG Compact 2-\u003e3, del 2 tables, add 2 tables, took 3.17671396s\n","namespace":"badger","time":"2019-10-01T22:25:44Z"}
  26. {"level":"info","msg":"Compaction for level: 2 DONE","namespace":"badger","time":"2019-10-01T22:25:44Z"}
  27. {"level":"info","msg":"Loaded 79 vertices (3011/sec)","time":"2019-10-01T22:25:45Z"}
  28. {"level":"info","msg":"Loading outputs/tcga/BLCA.GeneExpression.Vertex.json.gz","time":"2019-10-01T22:25:45Z"}
  29. {"level":"info","msg":"Loaded 433 vertices (39/sec)","time":"2019-10-01T22:25:56Z"}
  30. {"level":"info","msg":"Loading outputs/tcga/BLCA.TranscriptExpression.Vertex.json.gz","time":"2019-10-01T22:25:56Z"}
  31. {"level":"info","msg":"Loaded 433 vertices (12/sec)","time":"2019-10-01T22:26:30Z"}
  32. {"level":"info","msg":"Loading outputs/tcga/BRCA.GeneExpression.Vertex.json.gz","time":"2019-10-01T22:26:30Z"}
  33. {"level":"info","msg":"Loaded 1232 vertices (7/sec)","time":"2019-10-01T22:32:18Z"}
  34. {"level":"info","msg":"Loading outputs/tcga/BRCA.TranscriptExpression.Vertex.json.gz","time":"2019-10-01T22:32:18Z"}
  35. {"level":"info","msg":"Loaded 1232 vertices (2/sec)","time":"2019-10-01T22:37:34Z"}
  36. {"level":"info","msg":"Loading outputs/tcga/CESC.GeneExpression.Vertex.json.gz","time":"2019-10-01T22:37:34Z"}
  37. {"level":"info","msg":"Loaded 309 vertices (2/sec)","time":"2019-10-01T22:40:22Z"}
  38. {"level":"info","msg":"Loading outputs/tcga/CESC.TranscriptExpression.Vertex.json.gz","time":"2019-10-01T22:40:22Z"}
  39. {"level":"info","msg":"Loaded 309 vertices (2/sec)","time":"2019-10-01T22:43:15Z"}
  40. {"level":"info","msg":"Loading outputs/tcga/CHOL.GeneExpression.Vertex.json.gz","time":"2019-10-01T22:43:15Z"}
  41. {"level":"info","msg":"Loaded 45 vertices (2/sec)","time":"2019-10-01T22:43:37Z"}
  42. {"level":"info","msg":"Loading outputs/tcga/CHOL.TranscriptExpression.Vertex.json.gz","time":"2019-10-01T22:43:37Z"}
  43. {"level":"info","msg":"Loaded 45 vertices (2/sec)","time":"2019-10-01T22:44:00Z"}
  44. {"level":"info","msg":"Loading outputs/tcga/COAD.GeneExpression.Vertex.json.gz","time":"2019-10-01T22:44:00Z"}
  45. {"level":"info","msg":"Loaded 524 vertices (7/sec)","time":"2019-10-01T22:47:13Z"}
  46. {"level":"info","msg":"Loading outputs/tcga/COAD.TranscriptExpression.Vertex.json.gz","time":"2019-10-01T22:47:13Z"}
  47. {"level":"info","msg":"Loaded 524 vertices (5/sec)","time":"2019-10-01T22:51:05Z"}
  48. {"level":"info","msg":"Loading outputs/tcga/DLBC.GeneExpression.Vertex.json.gz","time":"2019-10-01T22:51:05Z"}
  49. {"level":"info","msg":"Loaded 48 vertices (7/sec)","time":"2019-10-01T22:51:12Z"}
  50. {"level":"info","msg":"Loading outputs/tcga/DLBC.TranscriptExpression.Vertex.json.gz","time":"2019-10-01T22:51:12Z"}
  51. {"level":"info","msg":"Loaded 48 vertices (7/sec)","time":"2019-10-01T22:51:19Z"}
  52. {"level":"info","msg":"Loading outputs/tcga/ESCA.GeneExpression.Vertex.json.gz","time":"2019-10-01T22:51:19Z"}
  53. {"level":"info","msg":"Loaded 198 vertices (8/sec)","time":"2019-10-01T22:51:49Z"}
  54. {"level":"info","msg":"Loading outputs/tcga/ESCA.TranscriptExpression.Vertex.json.gz","time":"2019-10-01T22:51:49Z"}
  55. {"level":"info","msg":"Loaded 198 vertices (2/sec)","time":"2019-10-01T22:52:31Z"}
  56. {"level":"info","msg":"Loading outputs/tcga/GBM.GeneExpression.Vertex.json.gz","time":"2019-10-01T22:52:31Z"}
  57. {"level":"info","msg":"Loaded 175 vertices (1/sec)","time":"2019-10-01T22:54:11Z"}
  58. {"level":"info","msg":"Loading outputs/tcga/GBM.TranscriptExpression.Vertex.json.gz","time":"2019-10-01T22:54:11Z"}
  59. {"level":"info","msg":"Loaded 175 vertices (1/sec)","time":"2019-10-01T22:55:52Z"}
  60. {"level":"info","msg":"Loading outputs/tcga/HNSC.GeneExpression.Vertex.json.gz","time":"2019-10-01T22:55:52Z"}
  61. {"level":"info","msg":"Loaded 566 vertices (1/sec)","time":"2019-10-01T22:59:29Z"}
  62. {"level":"info","msg":"Loading outputs/tcga/HNSC.TranscriptExpression.Vertex.json.gz","time":"2019-10-01T22:59:29Z"}
  63. {"level":"info","msg":"Loaded 566 vertices (7/sec)","time":"2019-10-01T23:02:55Z"}
  64. {"level":"info","msg":"Loading outputs/tcga/KICH.GeneExpression.Vertex.json.gz","time":"2019-10-01T23:02:55Z"}
  65. {"level":"info","msg":"Loaded 91 vertices (7/sec)","time":"2019-10-01T23:03:07Z"}
  66. {"level":"info","msg":"Loading outputs/tcga/KICH.TranscriptExpression.Vertex.json.gz","time":"2019-10-01T23:03:07Z"}
  67. {"level":"info","msg":"Loaded 91 vertices (7/sec)","time":"2019-10-01T23:03:21Z"}
  68. {"level":"info","msg":"Loading outputs/tcga/KIRC.GeneExpression.Vertex.json.gz","time":"2019-10-01T23:03:21Z"}
  69. {"level":"info","msg":"Loaded 614 vertices (2/sec)","time":"2019-10-01T23:07:21Z"}
  70. {"level":"info","msg":"Loading outputs/tcga/KIRC.TranscriptExpression.Vertex.json.gz","time":"2019-10-01T23:07:21Z"}
  71. {"level":"info","msg":"Loaded 614 vertices (7/sec)","time":"2019-10-01T23:11:07Z"}
  72. {"level":"info","msg":"Loading outputs/tcga/KIRP.GeneExpression.Vertex.json.gz","time":"2019-10-01T23:11:07Z"}
  73. {"level":"info","msg":"Loaded 323 vertices (7/sec)","time":"2019-10-01T23:11:53Z"}
  74. {"level":"info","msg":"Loading outputs/tcga/KIRP.TranscriptExpression.Vertex.json.gz","time":"2019-10-01T23:11:53Z"}
  75. {"level":"info","msg":"Loaded 323 vertices (1/sec)","time":"2019-10-01T23:14:41Z"}
  76. {"level":"info","msg":"Loading outputs/tcga/LAML.GeneExpression.Vertex.json.gz","time":"2019-10-01T23:14:41Z"}
  77. {"level":"info","msg":"Loaded 179 vertices (1/sec)","time":"2019-10-01T23:16:19Z"}
  78. {"level":"info","msg":"Loading outputs/tcga/LAML.TranscriptExpression.Vertex.json.gz","time":"2019-10-01T23:16:19Z"}
  79. {"level":"info","msg":"Loaded 179 vertices (1/sec)","time":"2019-10-01T23:17:57Z"}
  80. {"level":"info","msg":"Loading outputs/tcga/LGG.GeneExpression.Vertex.json.gz","time":"2019-10-01T23:17:57Z"}
  81. {"level":"info","msg":"Loaded 534 vertices (1/sec)","time":"2019-10-01T23:20:46Z"}
  82. {"level":"info","msg":"Loading outputs/tcga/LGG.TranscriptExpression.Vertex.json.gz","time":"2019-10-01T23:20:46Z"}
  83. {"level":"info","msg":"Loaded 534 vertices (7/sec)","time":"2019-10-01T23:24:14Z"}
  84. {"level":"info","msg":"Loading outputs/tcga/LIHC.GeneExpression.Vertex.json.gz","time":"2019-10-01T23:24:14Z"}
  85. {"level":"info","msg":"Loaded 424 vertices (7/sec)","time":"2019-10-01T23:25:10Z"}
  86. {"level":"info","msg":"Loading outputs/tcga/LIHC.TranscriptExpression.Vertex.json.gz","time":"2019-10-01T23:25:10Z"}
  87. 2019/10/01 23:27:36 Assert failed
  88. github.com/dgraph-io/badger/y.AssertTrue
  89. /go/pkg/mod/github.com/dgraph-io/badger@v0.0.0-20190809121831-9d7b751e85c9/y/error.go:55
  90. github.com/dgraph-io/badger.(*DB).updateHead
  91. /go/pkg/mod/github.com/dgraph-io/badger@v0.0.0-20190809121831-9d7b751e85c9/db.go:575
  92. github.com/dgraph-io/badger.(*DB).writeRequests
  93. /go/pkg/mod/github.com/dgraph-io/badger@v0.0.0-20190809121831-9d7b751e85c9/db.go:667
  94. github.com/dgraph-io/badger.(*DB).doWrites.func1
  95. /go/pkg/mod/github.com/dgraph-io/badger@v0.0.0-20190809121831-9d7b751e85c9/db.go:706
  96. runtime.goexit
  97. /usr/local/go/src/runtime/asm_amd64.s:1337
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