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Percona MongoDB Manifest issue

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May 11th, 2020
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  1. uli2020-05-11T19:41:05.914+0530 I CONTROL [main] ***** SERVER RESTARTED *****
  2. 2020-05-11T19:41:05.916+0530 I STORAGE [main] [RocksDB] Block Cache Size GB: 29
  3. 2020-05-11T19:41:05.916+0530 I STORAGE [main] [RocksDB] Compression: snappy
  4. 2020-05-11T19:41:05.916+0530 I STORAGE [main] [RocksDB] MaxWriteMBPerSec: 1024
  5. 2020-05-11T19:41:05.916+0530 I STORAGE [main] [RocksDB] Engine custom option:
  6. 2020-05-11T19:41:05.916+0530 I STORAGE [main] [RocksDB] Crash safe counters: 0
  7. 2020-05-11T19:41:05.916+0530 I STORAGE [main] [RocksDB] Counters: 1
  8. 2020-05-11T19:41:05.916+0530 I STORAGE [main] [RocksDB] Use SingleDelete in index: 0
  9. 2020-05-11T19:41:05.920+0530 I ACCESS [main] Initialized External Auth Session
  10. 2020-05-11T19:41:05.922+0530 I CONTROL [initandlisten] MongoDB starting : pid=26088 port=27017 dbpath=/data/db 64-bit host=localhost.localdomain
  11. 2020-05-11T19:41:05.922+0530 I CONTROL [initandlisten] db version v3.4.24-3.0
  12. 2020-05-11T19:41:05.922+0530 I CONTROL [initandlisten] git version: f86383fc4327d70eb4abaea689e609333e924db6
  13. 2020-05-11T19:41:05.922+0530 I CONTROL [initandlisten] OpenSSL version: OpenSSL 1.0.2k-fips 26 Jan 2017
  14. 2020-05-11T19:41:05.922+0530 I CONTROL [initandlisten] allocator: tcmalloc
  15. 2020-05-11T19:41:05.922+0530 I CONTROL [initandlisten] modules: none
  16. 2020-05-11T19:41:05.922+0530 I CONTROL [initandlisten] build environment:
  17. 2020-05-11T19:41:05.922+0530 I CONTROL [initandlisten] distarch: x86_64
  18. 2020-05-11T19:41:05.922+0530 I CONTROL [initandlisten] target_arch: x86_64
  19. 2020-05-11T19:41:05.922+0530 I CONTROL [initandlisten] options: { config: "/etc/mongod.conf", net: { bindIp: "127.0.0.1,103.117.174.152", port: 27017 }, processManagement: { fork: true, pidFilePath: "/var/run/mongod.pid" }, repair: true, security: { authorization: "enabled" }, storage: { dbPath: "/data/db", engine: "rocksdb", rocksdb: { cacheSizeGB: 29 } }, systemLog: { destination: "file", logAppend: true, path: "/var/log/mongo/mongod.log" } }
  20. 2020-05-11T19:41:05.928+0530 I - [initandlisten] Invariant failure: s resulted in status InternalError: IO error: While opening a file for sequentially reading: /data/db/db/MANIFEST-5415975: No such file or directory at src/mongo/db/storage/rocks/src/rocks_engine.cpp 208
  21. 2020-05-11T19:41:05.928+0530 I - [initandlisten]
  22.  
  23. ***aborting after invariant() failure
  24.  
  25.  
  26. 2020-05-11T19:41:05.930+0530 F - [initandlisten] Got signal: 6 (Aborted).
  27.  
  28. 0x556827179f11 0x556827179129 0x55682717960d 0x7ff833875630 0x7ff8334ce387 0x7ff8334cfa78 0x5568262fbc39 0x556826dfd5f4 0x556826e0dcb5 0x556826cf82c7 0x5568262e6d1e 0x55682630828b 0x7ff8334ba555 0x5568264082e5
  29. ----- BEGIN BACKTRACE -----
  30. {"backtrace":[{"b":"556825A1E000","o":"175BF11","s":"_ZN5mongo15printStackTraceERSo"},{"b":"556825A1E000","o":"175B129"},{"b":"556825A1E000","o":"175B60D"},{"b":"7FF833866000","o":"F630"},{"b":"7FF833498000","o":"36387","s":"gsignal"},{"b":"7FF833498000","o":"37A78","s":"abort"},{"b":"556825A1E000","o":"8DDC39","s":"_ZN5mongo25fassertFailedWithLocationEiPKcj"},{"b":"556825A1E000","o":"13DF5F4","s":"_ZN5mongo11RocksEngineC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEbib"},{"b":"556825A1E000","o":"13EFCB5"},{"b":"556825A1E000","o":"12DA2C7","s":"_ZN5mongo20ServiceContextMongoD29initializeGlobalStorageEngineEv"},{"b":"556825A1E000","o":"8C8D1E"},{"b":"556825A1E000","o":"8EA28B","s":"main"},{"b":"7FF833498000","o":"22555","s":"__libc_start_main"},{"b":"556825A1E000","o":"9EA2E5"}],"processInfo":{ "mongodbVersion" : "3.4.24-3.0", "gitVersion" : "f86383fc4327d70eb4abaea689e609333e924db6", "compiledModules" : [], "uname" : { "sysname" : "Linux", "release" : "3.10.0-1127.el7.x86_64", "version" : "#1 SMP Tue Mar 31 23:36:51 UTC 2020", "machine" : "x86_64" }, "somap" : [ { "b" : "556825A1E000", "elfType" : 3, "buildId" : "D5D504EA0CFB2481627347B5C66A8DA87755B2E6" }, { "b" : "7FFC3645F000", "elfType" : 3, "buildId" : "43CB8EF4D2E81F9B28A9D12A66DCDD91E29C1063" }, { "b" : "7FF834EA1000", "path" : "/lib64/libsasl2.so.3", "elfType" : 3, "buildId" : "E2F2017F821DD1B9D307DA1A9B8014F2941AEB7B" }, { "b" : "7FF834C8B000", "path" : "/lib64/libz.so.1", "elfType" : 3, "buildId" : "B9D5F73428BD6AD68C96986B57BEA3B7CEDB9745" }, { "b" : "7FF834A7B000", "path" : "/lib64/libbz2.so.1", "elfType" : 3, "buildId" : "0C85C0386F0CF41EA39969CF7F58A558D1AD3235" }, { "b" : "7FF834809000", "path" : "/lib64/libssl.so.10", "elfType" : 3, "buildId" : "3B305C3BA17FE394862E749763F2956C9C890C2E" }, { "b" : "7FF8343A6000", "path" : "/lib64/libcrypto.so.10", "elfType" : 3, "buildId" : "4CF1939F660008CFA869D8364651F31AACD2C1C4" }, { "b" : "7FF83419E000", "path" : "/lib64/librt.so.1", "elfType" : 3, "buildId" : "CCD4BE566DD5A8FC7FA62B224C14B698F51B0D0D" }, { "b" : "7FF833F9A000", "path" : "/lib64/libdl.so.2", "elfType" : 3, "buildId" : "F2C36986E11A291A0D4BCB3A81632B24AE2359EA" }, { "b" : "7FF833C98000", "path" : "/lib64/libm.so.6", "elfType" : 3, "buildId" : "085D924F5D23B9F15A8AD28B7231EE93C09E13F1" }, { "b" : "7FF833A82000", "path" : "/lib64/libgcc_s.so.1", "elfType" : 3, "buildId" : "DAC0179F4555AEFEC9E97476201802FD20C03EC5" }, { "b" : "7FF833866000", "path" : "/lib64/libpthread.so.0", "elfType" : 3, "buildId" : "2B482B3BAE79DEF4E5BC9791BC6BBDAE0E93E359" }, { "b" : "7FF833498000", "path" : "/lib64/libc.so.6", "elfType" : 3, "buildId" : "D78066A9C36F5FD63E2F6AC851AE3515C4C9792A" }, { "b" : "7FF8350BE000", "path" : "/lib64/ld-linux-x86-64.so.2", "elfType" : 3, "buildId" : "27FFD1FBC69569C776E666474EED723395E6D727" }, { "b" : "7FF83327E000", "path" : "/lib64/libresolv.so.2", "elfType" : 3, "buildId" : "C3B2DD93CD59A17EA97148EC98C2667ADB9987A3" }, { "b" : "7FF833047000", "path" : "/lib64/libcrypt.so.1", "elfType" : 3, "buildId" : "164A07A654E3B6AA09A43BF9ACE3728AB02BD0D7" }, { "b" : "7FF832DFA000", "path" : "/lib64/libgssapi_krb5.so.2", "elfType" : 3, "buildId" : "C3914975092B29D330453950350E254AA562D642" }, { "b" : "7FF832B11000", "path" : "/lib64/libkrb5.so.3", "elfType" : 3, "buildId" : "872EAC9F0CE30D5C4C37ECCCE3C586296D4FA1F0" }, { "b" : "7FF8328DE000", "path" : "/lib64/libk5crypto.so.3", "elfType" : 3, "buildId" : "7856E751772E8538A33113BA62145A8B23314093" }, { "b" : "7FF8326DA000", "path" : "/lib64/libcom_err.so.2", "elfType" : 3, "buildId" : "E4C7298B74FEEADC4DDE40CDD8C4D6B85FE09ADE" }, { "b" : "7FF8324CA000", "path" : "/lib64/libkrb5support.so.0", "elfType" : 3, "buildId" : "AED31F16223CE52AE079AB1ED4C09AC4C98F86B8" }, { "b" : "7FF8322C7000", "path" : "/lib64/libfreebl3.so", "elfType" : 3, "buildId" : "197680DAE6538245CB99723E57447C4EF2E98362" }, { "b" : "7FF8320C3000", "path" : "/lib64/libkeyutils.so.1", "elfType" : 3, "buildId" : "2E01D5AC08C1280D013AAB96B292AC58BC30A263" }, { "b" : "7FF831E9C000", "path" : "/lib64/libselinux.so.1", "elfType" : 3, "buildId" : "903A0BD0BFB4FEE8C284F41BEB9773DED94CBC52" }, { "b" : "7FF831C3A000", "path" : "/lib64/libpcre.so.1", "elfType" : 3, "buildId" : "9CA3D11F018BEEB719CDB34BE800BF1641350D0A" } ] }}
  31. mongod(_ZN5mongo15printStackTraceERSo+0x41) [0x556827179f11]
  32. mongod(+0x175B129) [0x556827179129]
  33. mongod(+0x175B60D) [0x55682717960d]
  34. libpthread.so.0(+0xF630) [0x7ff833875630]
  35. libc.so.6(gsignal+0x37) [0x7ff8334ce387]
  36. libc.so.6(abort+0x148) [0x7ff8334cfa78]
  37. mongod(_ZN5mongo25fassertFailedWithLocationEiPKcj+0x0) [0x5568262fbc39]
  38. mongod(_ZN5mongo11RocksEngineC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEbib+0x984) [0x556826dfd5f4]
  39. mongod(+0x13EFCB5) [0x556826e0dcb5]
  40. mongod(_ZN5mongo20ServiceContextMongoD29initializeGlobalStorageEngineEv+0x697) [0x556826cf82c7]
  41. mongod(+0x8C8D1E) [0x5568262e6d1e]
  42. mongod(main+0x96B) [0x55682630828b]
  43. libc.so.6(__libc_start_main+0xF5) [0x7ff8334ba555]
  44. mongod(+0x9EA2E5) [0x5568264082e5]
  45. ----- END BACKTRACE -----
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