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Legend_9813

Thiyya1 fail

Legend_9813
Apr 11th, 2023
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  1. qpAdm: parameter file: parqpadm
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. indivname: Indian.ind
  5. snpname: Indian.snp
  6. genotypename: Indian.geno
  7. popleft: left
  8. popright: right
  9. details: YES
  10. allsnps: YES
  11. inbreed: NO
  12. ## qpAdm version: 1520
  13. seed: -9616090
  14. inbreed set NO
  15. inbreed set NO
  16. tmp: /tmp/fsx.293
  17.  
  18. left pops:
  19. Thiyya1
  20. IVC_AASI
  21. Central_Steppe_MLBA
  22.  
  23. right pops:
  24. Mbuti.DG
  25. EHG
  26. CHG
  27. WSHG
  28. Onge.SG
  29. Turkey_N
  30. Iraq_PPNA
  31. Levant_PPN
  32. CHN_Tarim_EMBA1
  33. Iran_GanjDareh_N
  34. Mongolia_North_N
  35. Serbia_IronGates_Mesolithic
  36.  
  37. codimension 1
  38. f4info:
  39. f4rank: 1 dof: 10 chisq: 18.561 tail: 0.0462084511 dofdiff: 12 chisqdiff: -18.561 taildiff: 1
  40. B:
  41. scale 1.000
  42. EHG 1.460
  43. CHG 0.612
  44. WSHG 1.057
  45. Onge.SG -0.582
  46. Turkey_N 1.215
  47. Iraq_PPNA 0.788
  48. Levant_PPN 1.104
  49. CHN_Tarim_EMBA1 0.827
  50. Iran_GanjDareh_N 0.250
  51. Mongolia_North_N -0.216
  52. Serbia_IronGates_Mesolithic 1.711
  53. A:
  54. scale 64.055
  55. IVC_AASI 0.037
  56. Central_Steppe_MLBA 1.414
  57.  
  58.  
  59. full rank
  60. f4info:
  61. f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 18.561 taildiff: 0.0462084511
  62. B:
  63. scale 502.087 44.524
  64. EHG 1.224 1.480
  65. CHG -1.002 0.527
  66. WSHG 1.677 1.118
  67. Onge.SG -1.597 -0.646
  68. Turkey_N -0.493 1.142
  69. Iraq_PPNA 0.906 0.824
  70. Levant_PPN 1.047 1.133
  71. CHN_Tarim_EMBA1 0.544 0.833
  72. Iran_GanjDareh_N 0.298 0.255
  73. Mongolia_North_N 0.658 -0.170
  74. Serbia_IronGates_Mesolithic 0.397 1.676
  75. A:
  76. scale 1.414 1.414
  77. IVC_AASI 1.414 0.000
  78. Central_Steppe_MLBA 0.000 1.414
  79.  
  80.  
  81. best coefficients: 1.027 -0.027
  82. totmean: 1.027 -0.027
  83. boot mean: 1.027 -0.027
  84. std. errors: 0.030 0.030
  85.  
  86. error covariance (* 1,000,000)
  87. 922 -922
  88. -922 922
  89.  
  90.  
  91. summ: Thiyya1 2 0.046208 1.027 -0.027 922 -922 922
  92.  
  93. fixed pat wt dof chisq tail prob
  94. 00 0 10 18.561 0.0462085 1.027 -0.027 infeasible
  95. 01 1 11 19.303 0.0558665 1.000 0.000
  96. 10 1 11 1393.911 0 0.000 1.000
  97. best pat: 00 0.0462085 - -
  98. best pat: 01 0.0558665 chi(nested): 0.742 p-value for nested model: 0.388967
  99.  
  100. coeffs: 1.027 -0.027
  101.  
  102. ## dscore:: f_4(Base, Fit, Rbase, right2)
  103. ## genstat:: f_4(Base, Fit, right1, right2)
  104.  
  105. details: IVC_AASI EHG 0.002438 1.319119
  106. details: Central_Steppe_MLBA EHG 0.033233 21.254401
  107. dscore: EHG f4: 0.001607 Z: 0.861080
  108.  
  109. details: IVC_AASI CHG -0.001995 -0.895816
  110. details: Central_Steppe_MLBA CHG 0.011835 5.989007
  111. dscore: CHG f4: -0.002369 Z: -1.055073
  112.  
  113. details: IVC_AASI WSHG 0.003339 1.424358
  114. details: Central_Steppe_MLBA WSHG 0.025103 13.185382
  115. dscore: WSHG f4: 0.002752 Z: 1.162320
  116.  
  117. details: IVC_AASI Onge.SG -0.003182 -1.678420
  118. details: Central_Steppe_MLBA Onge.SG -0.014516 -8.632761
  119. dscore: Onge.SG f4: -0.002876 Z: -1.504135
  120.  
  121. details: IVC_AASI Turkey_N -0.000982 -0.619404
  122. details: Central_Steppe_MLBA Turkey_N 0.025647 19.274642
  123. dscore: Turkey_N f4: -0.001701 Z: -1.061917
  124.  
  125. details: IVC_AASI Iraq_PPNA 0.001804 0.670473
  126. details: Central_Steppe_MLBA Iraq_PPNA 0.018515 8.114587
  127. dscore: Iraq_PPNA f4: 0.001353 Z: 0.498728
  128.  
  129. details: IVC_AASI Levant_PPN 0.002085 0.902149
  130. details: Central_Steppe_MLBA Levant_PPN 0.025457 12.559900
  131. dscore: Levant_PPN f4: 0.001454 Z: 0.624736
  132.  
  133. details: IVC_AASI CHN_Tarim_EMBA1 0.001082 0.510181
  134. details: Central_Steppe_MLBA CHN_Tarim_EMBA1 0.018708 11.117602
  135. dscore: CHN_Tarim_EMBA1 f4: 0.000607 Z: 0.282899
  136.  
  137. details: IVC_AASI Iran_GanjDareh_N 0.000594 0.318323
  138. details: Central_Steppe_MLBA Iran_GanjDareh_N 0.005728 3.716002
  139. dscore: Iran_GanjDareh_N f4: 0.000456 Z: 0.241787
  140.  
  141. details: IVC_AASI Mongolia_North_N 0.001311 0.675700
  142. details: Central_Steppe_MLBA Mongolia_North_N -0.003827 -2.276440
  143. dscore: Mongolia_North_N f4: 0.001450 Z: 0.740993
  144.  
  145. details: IVC_AASI Serbia_IronGates_Mesolithic 0.000791 0.435711
  146. details: Central_Steppe_MLBA Serbia_IronGates_Mesolithic 0.037647 24.756006
  147. dscore: Serbia_IronGates_Mesolithic f4: -0.000203 Z: -0.110907
  148.  
  149. gendstat: Mbuti.DG EHG 0.861
  150. gendstat: Mbuti.DG CHG -1.055
  151. gendstat: Mbuti.DG WSHG 1.162
  152. gendstat: Mbuti.DG Onge.SG -1.504
  153. gendstat: Mbuti.DG Turkey_N -1.062
  154. gendstat: Mbuti.DG Iraq_PPNA 0.499
  155. gendstat: Mbuti.DG Levant_PPN 0.625
  156. gendstat: Mbuti.DG CHN_Tarim_EMBA1 0.283
  157. gendstat: Mbuti.DG Iran_GanjDareh_N 0.242
  158. gendstat: Mbuti.DG Mongolia_North_N 0.741
  159. gendstat: Mbuti.DG Serbia_IronGates_Mesolithic -0.111
  160. gendstat: EHG CHG -1.915
  161. gendstat: EHG WSHG 0.660
  162. gendstat: EHG Onge.SG -2.213
  163. gendstat: EHG Turkey_N -2.380
  164. gendstat: EHG Iraq_PPNA -0.099
  165. gendstat: EHG Levant_PPN -0.072
  166. gendstat: EHG CHN_Tarim_EMBA1 -0.665
  167. gendstat: EHG Iran_GanjDareh_N -0.681
  168. gendstat: EHG Mongolia_North_N -0.087
  169. gendstat: EHG Serbia_IronGates_Mesolithic -1.543
  170. gendstat: CHG WSHG 2.107
  171. gendstat: CHG Onge.SG -0.211
  172. gendstat: CHG Turkey_N 0.368
  173. gendstat: CHG Iraq_PPNA 1.359
  174. gendstat: CHG Levant_PPN 1.576
  175. gendstat: CHG CHN_Tarim_EMBA1 1.301
  176. gendstat: CHG Iran_GanjDareh_N 1.386
  177. gendstat: CHG Mongolia_North_N 1.679
  178. gendstat: CHG Serbia_IronGates_Mesolithic 1.109
  179. gendstat: WSHG Onge.SG -2.344
  180. gendstat: WSHG Turkey_N -2.219
  181. gendstat: WSHG Iraq_PPNA -0.471
  182. gendstat: WSHG Levant_PPN -0.505
  183. gendstat: WSHG CHN_Tarim_EMBA1 -1.145
  184. gendstat: WSHG Iran_GanjDareh_N -1.048
  185. gendstat: WSHG Mongolia_North_N -0.599
  186. gendstat: WSHG Serbia_IronGates_Mesolithic -1.552
  187. gendstat: Onge.SG Turkey_N 0.625
  188. gendstat: Onge.SG Iraq_PPNA 1.501
  189. gendstat: Onge.SG Levant_PPN 1.772
  190. gendstat: Onge.SG CHN_Tarim_EMBA1 1.630
  191. gendstat: Onge.SG Iran_GanjDareh_N 1.576
  192. gendstat: Onge.SG Mongolia_North_N 2.402
  193. gendstat: Onge.SG Serbia_IronGates_Mesolithic 1.357
  194. gendstat: Turkey_N Iraq_PPNA 1.317
  195. gendstat: Turkey_N Levant_PPN 1.832
  196. gendstat: Turkey_N CHN_Tarim_EMBA1 1.282
  197. gendstat: Turkey_N Iran_GanjDareh_N 1.501
  198. gendstat: Turkey_N Mongolia_North_N 1.785
  199. gendstat: Turkey_N Serbia_IronGates_Mesolithic 1.240
  200. gendstat: Iraq_PPNA Levant_PPN 0.036
  201. gendstat: Iraq_PPNA CHN_Tarim_EMBA1 -0.266
  202. gendstat: Iraq_PPNA Iran_GanjDareh_N -0.352
  203. gendstat: Iraq_PPNA Mongolia_North_N 0.035
  204. gendstat: Iraq_PPNA Serbia_IronGates_Mesolithic -0.618
  205. gendstat: Levant_PPN CHN_Tarim_EMBA1 -0.346
  206. gendstat: Levant_PPN Iran_GanjDareh_N -0.456
  207. gendstat: Levant_PPN Mongolia_North_N -0.002
  208. gendstat: Levant_PPN Serbia_IronGates_Mesolithic -0.822
  209. gendstat: CHN_Tarim_EMBA1 Iran_GanjDareh_N -0.074
  210. gendstat: CHN_Tarim_EMBA1 Mongolia_North_N 0.426
  211. gendstat: CHN_Tarim_EMBA1 Serbia_IronGates_Mesolithic -0.466
  212. gendstat: Iran_GanjDareh_N Mongolia_North_N 0.487
  213. gendstat: Iran_GanjDareh_N Serbia_IronGates_Mesolithic -0.398
  214. gendstat: Mongolia_North_N Serbia_IronGates_Mesolithic -0.917
  215.  
  216. removing /tmp/fsx.293
  217. ##end of qpAdm: 1.116 seconds cpu 0.700 Mbytes in use
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