Advertisement
Not a member of Pastebin yet?
Sign Up,
it unlocks many cool features!
- /home/ubuntu/AdmixTools-master/bin/qpAdm: parameter file: qpAdm_parfile
- ### THE INPUT PARAMETERS
- ##PARAMETER NAME: VALUE
- indivname: /home/ubuntu/Arc/SouthernArc_Public.ind
- snpname: /home/ubuntu/Arc/SouthernArc_Public.snp
- genotypename: /home/ubuntu/Arc/SouthernArc_Public.geno
- popleft: /home/ubuntu/pLeft.tx
- popright: /home//ubuntu/pRightSArc2.tx
- allsnps: YES
- ## qpAdm version: 1201
- seed: 681110589
- read 1073741824 bytes
- read 1831024305 bytes
- packed geno read OK
- end of inpack
- left pops:
- TUR_Marmara_Barcın_ChL
- TUR_Marmara_Barcın_N
- GEO_Satsurblia
- RUS_Eneol_Piedmont
- right pops:
- CMR_SMA_published
- MAR_Taforalt_EpiP
- CZE_Vestonice15
- RUS_Tyumen_HG
- RUS_Kostenki14
- RUS_MA1_HG
- CHN_Tianyuan
- RUS_DevilsCave_N
- LUX_Loschbour.DG
- RUS_EHG
- SRB_Iron_Gates_HG
- TUR_Pınarbaşı_EpiP
- ISR_Natufian_EpiP
- IRQ_Nemrik9_PPN
- TUR_Hatay_TellKurdu_ChL
- IRN_Ganj_Dareh_N
- 0 TUR_Marmara_Barcın_ChL 1
- 1 TUR_Marmara_Barcın_N 20
- 2 GEO_Satsurblia 1
- 3 RUS_Eneol_Piedmont 2
- 4 CMR_SMA_published 2
- 5 MAR_Taforalt_EpiP 6
- 6 CZE_Vestonice15 1
- 7 RUS_Tyumen_HG 2
- 8 RUS_Kostenki14 1
- 9 RUS_MA1_HG 1
- 10 CHN_Tianyuan 1
- 11 RUS_DevilsCave_N 4
- 12 LUX_Loschbour.DG 1
- 13 RUS_EHG 1
- 14 SRB_Iron_Gates_HG 34
- 15 TUR_Pınarbaşı_EpiP 1
- 16 ISR_Natufian_EpiP 6
- 17 IRQ_Nemrik9_PPN 2
- 18 TUR_Hatay_TellKurdu_ChL 6
- 19 IRN_Ganj_Dareh_N 8
- jackknife block size: 0.050
- snps: 1150450 indivs: 101
- number of blocks for block jackknife: 714
- ## ncols: 1150450
- coverage: TUR_Marmara_Barcın_ChL 963510
- coverage: TUR_Marmara_Barcın_N 1138534
- coverage: GEO_Satsurblia 801311
- coverage: RUS_Eneol_Piedmont 967425
- coverage: CMR_SMA_published 1002569
- coverage: MAR_Taforalt_EpiP 1101342
- coverage: CZE_Vestonice15 29050
- coverage: RUS_Tyumen_HG 807474
- coverage: RUS_Kostenki14 1068326
- coverage: RUS_MA1_HG 805960
- coverage: CHN_Tianyuan 885079
- coverage: RUS_DevilsCave_N 1149702
- coverage: LUX_Loschbour.DG 1062011
- coverage: RUS_EHG 532960
- coverage: SRB_Iron_Gates_HG 1139278
- coverage: TUR_Pınarbaşı_EpiP 848431
- coverage: ISR_Natufian_EpiP 200048
- coverage: IRQ_Nemrik9_PPN 339637
- coverage: TUR_Hatay_TellKurdu_ChL 680758
- coverage: IRN_Ganj_Dareh_N 1057358
- Effective number of blocks: 618.585
- numsnps used: 1150450
- codimension 1
- f4info:
- f4rank: 2 dof: 13 chisq: 14.845 tail: 0.317129765 dofdiff: 15 chisqdiff: -14.845 taildiff: 1
- B:
- scale 1.000 1.000
- MAR_Taforalt_EpiP -0.686 0.724
- CZE_Vestonice15 -0.022 0.058
- RUS_Tyumen_HG 2.029 1.058
- RUS_Kostenki14 0.095 0.506
- RUS_MA1_HG 1.371 0.493
- CHN_Tianyuan 0.479 0.291
- RUS_DevilsCave_N 0.464 -0.019
- LUX_Loschbour.DG 0.021 1.148
- RUS_EHG 1.273 1.040
- SRB_Iron_Gates_HG 0.176 1.748
- TUR_Pınarbaşı_EpiP -1.877 2.013
- ISR_Natufian_EpiP -0.551 0.532
- IRQ_Nemrik9_PPN -0.293 -0.072
- TUR_Hatay_TellKurdu_ChL -1.481 1.471
- IRN_Ganj_Dareh_N 0.566 -0.900
- A:
- scale 557.305 972.849
- TUR_Marmara_Barcın_N -0.522 0.449
- GEO_Satsurblia 0.258 -1.540
- RUS_Eneol_Piedmont 1.631 0.654
- full rank
- f4info:
- f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 13 chisqdiff: 14.845 taildiff: 0.317129765
- B:
- scale 859.211 542.027 346.545
- MAR_Taforalt_EpiP 0.531 -1.072 -0.655
- CZE_Vestonice15 -0.066 -0.095 -0.029
- RUS_Tyumen_HG -1.198 -0.496 2.326
- RUS_Kostenki14 0.074 -0.567 0.203
- RUS_MA1_HG -1.140 -0.281 1.435
- CHN_Tianyuan -0.055 -0.107 0.635
- RUS_DevilsCave_N -0.666 -0.182 0.364
- LUX_Loschbour.DG 1.013 -0.821 0.530
- RUS_EHG -0.958 -0.812 1.416
- SRB_Iron_Gates_HG 0.580 -1.572 0.616
- TUR_Pınarbaşı_EpiP 2.416 -2.228 -1.365
- ISR_Natufian_EpiP 0.515 -0.665 -0.471
- IRQ_Nemrik9_PPN 0.121 -0.137 -0.346
- TUR_Hatay_TellKurdu_ChL 1.502 -1.847 -1.247
- IRN_Ganj_Dareh_N -0.935 0.714 0.311
- A:
- scale 1.732 1.732 1.732
- TUR_Marmara_Barcın_N 1.732 0.000 0.000
- GEO_Satsurblia 0.000 1.732 0.000
- RUS_Eneol_Piedmont 0.000 0.000 1.732
- best coefficients: 0.603 0.242 0.155
- Jackknife mean: 0.603012207 0.242192743 0.154795049
- std. errors: 0.033 0.048 0.033
- error covariance (* 1,000,000)
- 1058 -1132 74
- -1132 2322 -1190
- 74 -1190 1115
- summ: TUR_Marmara_Barcın_ChL 3 0.317130 0.603 0.242 0.155 1058 -1132 74 2322 -1190 ...
- 1115
- fixed pat wt dof chisq tail prob
- 000 0 13 14.845 0.31713 0.603 0.242 0.155
- 001 1 14 39.375 0.000319086 0.591 0.409 0.000
- 010 1 14 38.306 0.000466406 0.719 0.000 0.281
- 100 1 14 282.815 0 0.000 1.106 -0.106 infeasible
- 011 2 15 158.893 4.09101e-26 1.000 0.000 0.000
- 101 2 15 287.142 0 0.000 1.000 0.000
- 110 2 15 707.845 0 0.000 0.000 1.000
- best pat: 000 0.31713 - -
- best pat: 010 0.000466406 chi(nested): 23.461 p-value for nested model: 1.27441e-06
- best pat: 011 4.09101e-26 chi(nested): 120.586 p-value for nested model: 4.70795e-28
- coeffs: 0.603 0.242 0.155
- ## dscore:: f_4(Base, Fit, Rbase, right2)
- ## genstat:: f_4(Base, Fit, right1, right2)
- details: TUR_Marmara_Barcın_N MAR_Taforalt_EpiP 0.000618 1.938331
- details: GEO_Satsurblia MAR_Taforalt_EpiP -0.001977 -5.242346
- details: RUS_Eneol_Piedmont MAR_Taforalt_EpiP -0.001890 -4.910263
- dscore: MAR_Taforalt_EpiP f4: -0.000397 Z: -1.307209
- details: TUR_Marmara_Barcın_N CZE_Vestonice15 -0.000077 -0.600556
- details: GEO_Satsurblia CZE_Vestonice15 -0.000176 -1.790143
- details: RUS_Eneol_Piedmont CZE_Vestonice15 -0.000084 -0.924617
- dscore: CZE_Vestonice15 f4: -0.000102 Z: -1.011424
- details: TUR_Marmara_Barcın_N RUS_Tyumen_HG -0.001394 -3.447976
- details: GEO_Satsurblia RUS_Tyumen_HG -0.000914 -2.023323
- details: RUS_Eneol_Piedmont RUS_Tyumen_HG 0.006713 13.818367
- dscore: RUS_Tyumen_HG f4: -0.000022 Z: -0.058938
- details: TUR_Marmara_Barcın_N RUS_Kostenki14 0.000086 0.204176
- details: GEO_Satsurblia RUS_Kostenki14 -0.001047 -2.217773
- details: RUS_Eneol_Piedmont RUS_Kostenki14 0.000585 1.188791
- dscore: RUS_Kostenki14 f4: -0.000111 Z: -0.282644
- details: TUR_Marmara_Barcın_N RUS_MA1_HG -0.001327 -3.237743
- details: GEO_Satsurblia RUS_MA1_HG -0.000518 -1.210052
- details: RUS_Eneol_Piedmont RUS_MA1_HG 0.004140 9.116496
- dscore: RUS_MA1_HG f4: -0.000285 Z: -0.766933
- details: TUR_Marmara_Barcın_N CHN_Tianyuan -0.000064 -0.155887
- details: GEO_Satsurblia CHN_Tianyuan -0.000198 -0.431371
- details: RUS_Eneol_Piedmont CHN_Tianyuan 0.001833 3.602536
- dscore: CHN_Tianyuan f4: 0.000198 Z: 0.507464
- details: TUR_Marmara_Barcın_N RUS_DevilsCave_N -0.000775 -2.245534
- details: GEO_Satsurblia RUS_DevilsCave_N -0.000337 -0.820609
- details: RUS_Eneol_Piedmont RUS_DevilsCave_N 0.001049 2.460171
- dscore: RUS_DevilsCave_N f4: -0.000386 Z: -1.186065
- details: TUR_Marmara_Barcın_N LUX_Loschbour.DG 0.001179 2.845472
- details: GEO_Satsurblia LUX_Loschbour.DG -0.001514 -3.280505
- details: RUS_Eneol_Piedmont LUX_Loschbour.DG 0.001530 3.072948
- dscore: LUX_Loschbour.DG f4: 0.000582 Z: 1.525893
- details: TUR_Marmara_Barcın_N RUS_EHG -0.001115 -2.965907
- details: GEO_Satsurblia RUS_EHG -0.001499 -3.990039
- details: RUS_Eneol_Piedmont RUS_EHG 0.004086 9.685473
- dscore: RUS_EHG f4: -0.000402 Z: -1.195810
- details: TUR_Marmara_Barcın_N SRB_Iron_Gates_HG 0.000674 2.015846
- details: GEO_Satsurblia SRB_Iron_Gates_HG -0.002901 -7.000792
- details: RUS_Eneol_Piedmont SRB_Iron_Gates_HG 0.001777 4.226558
- dscore: SRB_Iron_Gates_HG f4: -0.000019 Z: -0.058313
- details: TUR_Marmara_Barcın_N TUR_Pınarbaşı_EpiP 0.002812 6.462181
- details: GEO_Satsurblia TUR_Pınarbaşı_EpiP -0.004110 -9.065116
- details: RUS_Eneol_Piedmont TUR_Pınarbaşı_EpiP -0.003940 -8.275513
- dscore: TUR_Pınarbaşı_EpiP f4: 0.000093 Z: 0.237897
- details: TUR_Marmara_Barcın_N ISR_Natufian_EpiP 0.000599 2.350851
- details: GEO_Satsurblia ISR_Natufian_EpiP -0.001227 -5.880624
- details: RUS_Eneol_Piedmont ISR_Natufian_EpiP -0.001358 -6.545791
- dscore: ISR_Natufian_EpiP f4: -0.000145 Z: -0.695021
- details: TUR_Marmara_Barcın_N IRQ_Nemrik9_PPN 0.000141 0.446449
- details: GEO_Satsurblia IRQ_Nemrik9_PPN -0.000253 -0.894047
- details: RUS_Eneol_Piedmont IRQ_Nemrik9_PPN -0.000998 -3.579787
- dscore: IRQ_Nemrik9_PPN f4: -0.000131 Z: -0.490105
- details: TUR_Marmara_Barcın_N TUR_Hatay_TellKurdu_ChL 0.001749 5.250977
- details: GEO_Satsurblia TUR_Hatay_TellKurdu_ChL -0.003408 -9.286061
- details: RUS_Eneol_Piedmont TUR_Hatay_TellKurdu_ChL -0.003599 -9.982810
- dscore: TUR_Hatay_TellKurdu_ChL f4: -0.000326 Z: -1.074269
- details: TUR_Marmara_Barcın_N IRN_Ganj_Dareh_N -0.001089 -3.487426
- details: GEO_Satsurblia IRN_Ganj_Dareh_N 0.001318 3.451135
- details: RUS_Eneol_Piedmont IRN_Ganj_Dareh_N 0.000898 2.348385
- dscore: IRN_Ganj_Dareh_N f4: -0.000199 Z: -0.674066
- gendstat: CMR_SMA_published MAR_Taforalt_EpiP -1.307
- gendstat: CMR_SMA_published CZE_Vestonice15 -1.011
- gendstat: CMR_SMA_published RUS_Tyumen_HG -0.059
- gendstat: CMR_SMA_published RUS_Kostenki14 -0.283
- gendstat: CMR_SMA_published RUS_MA1_HG -0.767
- gendstat: CMR_SMA_published CHN_Tianyuan 0.507
- gendstat: CMR_SMA_published RUS_DevilsCave_N -1.186
- gendstat: CMR_SMA_published LUX_Loschbour.DG 1.526
- gendstat: CMR_SMA_published RUS_EHG -1.196
- gendstat: CMR_SMA_published SRB_Iron_Gates_HG -0.058
- gendstat: CMR_SMA_published TUR_Pınarbaşı_EpiP 0.238
- gendstat: CMR_SMA_published ISR_Natufian_EpiP -0.695
- gendstat: CMR_SMA_published IRQ_Nemrik9_PPN -0.490
- gendstat: CMR_SMA_published TUR_Hatay_TellKurdu_ChL -1.074
- gendstat: CMR_SMA_published IRN_Ganj_Dareh_N -0.674
- gendstat: MAR_Taforalt_EpiP CZE_Vestonice15 0.955
- gendstat: MAR_Taforalt_EpiP RUS_Tyumen_HG 0.913
- gendstat: MAR_Taforalt_EpiP RUS_Kostenki14 0.726
- gendstat: MAR_Taforalt_EpiP RUS_MA1_HG 0.295
- gendstat: MAR_Taforalt_EpiP CHN_Tianyuan 1.504
- gendstat: MAR_Taforalt_EpiP RUS_DevilsCave_N 0.033
- gendstat: MAR_Taforalt_EpiP LUX_Loschbour.DG 2.552
- gendstat: MAR_Taforalt_EpiP RUS_EHG -0.011
- gendstat: MAR_Taforalt_EpiP SRB_Iron_Gates_HG 1.205
- gendstat: MAR_Taforalt_EpiP TUR_Pınarbaşı_EpiP 1.196
- gendstat: MAR_Taforalt_EpiP ISR_Natufian_EpiP 0.849
- gendstat: MAR_Taforalt_EpiP IRQ_Nemrik9_PPN 0.780
- gendstat: MAR_Taforalt_EpiP TUR_Hatay_TellKurdu_ChL 0.229
- gendstat: MAR_Taforalt_EpiP IRN_Ganj_Dareh_N 0.618
- gendstat: CZE_Vestonice15 RUS_Tyumen_HG 0.213
- gendstat: CZE_Vestonice15 RUS_Kostenki14 -0.022
- gendstat: CZE_Vestonice15 RUS_MA1_HG -0.490
- gendstat: CZE_Vestonice15 CHN_Tianyuan 0.764
- gendstat: CZE_Vestonice15 RUS_DevilsCave_N -0.873
- gendstat: CZE_Vestonice15 LUX_Loschbour.DG 1.767
- gendstat: CZE_Vestonice15 RUS_EHG -0.879
- gendstat: CZE_Vestonice15 SRB_Iron_Gates_HG 0.260
- gendstat: CZE_Vestonice15 TUR_Pınarbaşı_EpiP 0.498
- gendstat: CZE_Vestonice15 ISR_Natufian_EpiP -0.193
- gendstat: CZE_Vestonice15 IRQ_Nemrik9_PPN -0.104
- gendstat: CZE_Vestonice15 TUR_Hatay_TellKurdu_ChL -0.722
- gendstat: CZE_Vestonice15 IRN_Ganj_Dareh_N -0.316
- gendstat: RUS_Tyumen_HG RUS_Kostenki14 -0.205
- gendstat: RUS_Tyumen_HG RUS_MA1_HG -0.651
- gendstat: RUS_Tyumen_HG CHN_Tianyuan 0.491
- gendstat: RUS_Tyumen_HG RUS_DevilsCave_N -0.898
- gendstat: RUS_Tyumen_HG LUX_Loschbour.DG 1.420
- gendstat: RUS_Tyumen_HG RUS_EHG -1.028
- gendstat: RUS_Tyumen_HG SRB_Iron_Gates_HG 0.009
- gendstat: RUS_Tyumen_HG TUR_Pınarbaşı_EpiP 0.256
- gendstat: RUS_Tyumen_HG ISR_Natufian_EpiP -0.321
- gendstat: RUS_Tyumen_HG IRQ_Nemrik9_PPN -0.274
- gendstat: RUS_Tyumen_HG TUR_Hatay_TellKurdu_ChL -0.776
- gendstat: RUS_Tyumen_HG IRN_Ganj_Dareh_N -0.484
- gendstat: RUS_Kostenki14 RUS_MA1_HG -0.407
- gendstat: RUS_Kostenki14 CHN_Tianyuan 0.701
- gendstat: RUS_Kostenki14 RUS_DevilsCave_N -0.696
- gendstat: RUS_Kostenki14 LUX_Loschbour.DG 1.667
- gendstat: RUS_Kostenki14 RUS_EHG -0.669
- gendstat: RUS_Kostenki14 SRB_Iron_Gates_HG 0.264
- gendstat: RUS_Kostenki14 TUR_Pınarbaşı_EpiP 0.428
- gendstat: RUS_Kostenki14 ISR_Natufian_EpiP -0.086
- gendstat: RUS_Kostenki14 IRQ_Nemrik9_PPN -0.049
- gendstat: RUS_Kostenki14 TUR_Hatay_TellKurdu_ChL -0.524
- gendstat: RUS_Kostenki14 IRN_Ganj_Dareh_N -0.230
- gendstat: RUS_MA1_HG CHN_Tianyuan 1.082
- gendstat: RUS_MA1_HG RUS_DevilsCave_N -0.266
- gendstat: RUS_MA1_HG LUX_Loschbour.DG 2.063
- gendstat: RUS_MA1_HG RUS_EHG -0.293
- gendstat: RUS_MA1_HG SRB_Iron_Gates_HG 0.760
- gendstat: RUS_MA1_HG TUR_Pınarbaşı_EpiP 0.848
- gendstat: RUS_MA1_HG ISR_Natufian_EpiP 0.368
- gendstat: RUS_MA1_HG IRQ_Nemrik9_PPN 0.390
- gendstat: RUS_MA1_HG TUR_Hatay_TellKurdu_ChL -0.106
- gendstat: RUS_MA1_HG IRN_Ganj_Dareh_N 0.229
- gendstat: CHN_Tianyuan RUS_DevilsCave_N -1.562
- gendstat: CHN_Tianyuan LUX_Loschbour.DG 0.865
- gendstat: CHN_Tianyuan RUS_EHG -1.402
- gendstat: CHN_Tianyuan SRB_Iron_Gates_HG -0.570
- gendstat: CHN_Tianyuan TUR_Pınarbaşı_EpiP -0.229
- gendstat: CHN_Tianyuan ISR_Natufian_EpiP -0.862
- gendstat: CHN_Tianyuan IRQ_Nemrik9_PPN -0.788
- gendstat: CHN_Tianyuan TUR_Hatay_TellKurdu_ChL -1.259
- gendstat: CHN_Tianyuan IRN_Ganj_Dareh_N -1.028
- gendstat: RUS_DevilsCave_N LUX_Loschbour.DG 2.433
- gendstat: RUS_DevilsCave_N RUS_EHG -0.041
- gendstat: RUS_DevilsCave_N SRB_Iron_Gates_HG 1.161
- gendstat: RUS_DevilsCave_N TUR_Pınarbaşı_EpiP 1.150
- gendstat: RUS_DevilsCave_N ISR_Natufian_EpiP 0.712
- gendstat: RUS_DevilsCave_N IRQ_Nemrik9_PPN 0.737
- gendstat: RUS_DevilsCave_N TUR_Hatay_TellKurdu_ChL 0.175
- gendstat: RUS_DevilsCave_N IRN_Ganj_Dareh_N 0.594
- gendstat: LUX_Loschbour.DG RUS_EHG -2.442
- gendstat: LUX_Loschbour.DG SRB_Iron_Gates_HG -2.265
- gendstat: LUX_Loschbour.DG TUR_Pınarbaşı_EpiP -1.132
- gendstat: LUX_Loschbour.DG ISR_Natufian_EpiP -1.909
- gendstat: LUX_Loschbour.DG IRQ_Nemrik9_PPN -1.759
- gendstat: LUX_Loschbour.DG TUR_Hatay_TellKurdu_ChL -2.436
- gendstat: LUX_Loschbour.DG IRN_Ganj_Dareh_N -2.084
- gendstat: RUS_EHG SRB_Iron_Gates_HG 1.189
- gendstat: RUS_EHG TUR_Pınarbaşı_EpiP 1.123
- gendstat: RUS_EHG ISR_Natufian_EpiP 0.732
- gendstat: RUS_EHG IRQ_Nemrik9_PPN 0.722
- gendstat: RUS_EHG TUR_Hatay_TellKurdu_ChL 0.202
- gendstat: RUS_EHG IRN_Ganj_Dareh_N 0.566
- gendstat: SRB_Iron_Gates_HG TUR_Pınarbaşı_EpiP 0.311
- gendstat: SRB_Iron_Gates_HG ISR_Natufian_EpiP -0.407
- gendstat: SRB_Iron_Gates_HG IRQ_Nemrik9_PPN -0.338
- gendstat: SRB_Iron_Gates_HG TUR_Hatay_TellKurdu_ChL -1.078
- gendstat: SRB_Iron_Gates_HG IRN_Ganj_Dareh_N -0.606
- gendstat: TUR_Pınarbaşı_EpiP ISR_Natufian_EpiP -0.606
- gendstat: TUR_Pınarbaşı_EpiP IRQ_Nemrik9_PPN -0.556
- gendstat: TUR_Pınarbaşı_EpiP TUR_Hatay_TellKurdu_ChL -1.155
- gendstat: TUR_Pınarbaşı_EpiP IRN_Ganj_Dareh_N -0.717
- gendstat: ISR_Natufian_EpiP IRQ_Nemrik9_PPN 0.048
- gendstat: ISR_Natufian_EpiP TUR_Hatay_TellKurdu_ChL -0.605
- gendstat: ISR_Natufian_EpiP IRN_Ganj_Dareh_N -0.172
- gendstat: IRQ_Nemrik9_PPN TUR_Hatay_TellKurdu_ChL -0.602
- gendstat: IRQ_Nemrik9_PPN IRN_Ganj_Dareh_N -0.221
- gendstat: TUR_Hatay_TellKurdu_ChL IRN_Ganj_Dareh_N 0.406
- ##end of qpAdm: 158.662 seconds cpu 1533.923 Mbytes in use
Advertisement
Add Comment
Please, Sign In to add comment
Advertisement