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- allsnps: YES
- ## qpAdm version: 1000
- seed: 1867538123
- read 1073741824 bytes
- read 2147483648 bytes
- read 2179966984 bytes
- packed geno read OK
- end of inpack
- left pops:
- Alalakh_MLBA_outlier
- Uzbekistan_BA_Dzharkutan1
- Russia_MLBA_Sintashta
- Kyrgyzstan_BA_Aygirdjal
- right pops:
- Cameroon_SMA.DG
- EEHG
- WSHG
- PPN
- WEHG
- Anatolia_N
- Iran_GanjDareh_N
- Russia_UstBelaya_Angara
- ONG.SG
- Botai
- CHG
- 0 Alalakh_MLBA_outlier 1
- 1 Uzbekistan_BA_Dzharkutan1 7
- 2 Russia_MLBA_Sintashta 36
- 3 Kyrgyzstan_BA_Aygirdjal 2
- 4 Cameroon_SMA.DG 1
- 5 EEHG 5
- 6 WSHG 3
- 7 PPN 11
- 8 WEHG 33
- 9 Anatolia_N 22
- 10 Iran_GanjDareh_N 8
- 11 Russia_UstBelaya_Angara 8
- 12 ONG.SG 6
- 13 Botai 2
- 14 CHG 2
- jackknife block size: 0.050
- snps: 1150509 indivs: 147
- number of blocks for block jackknife: 713
- ## ncols: 1150509
- coverage: Alalakh_MLBA_outlier 733730
- coverage: Uzbekistan_BA_Dzharkutan1 1054006
- coverage: Russia_MLBA_Sintashta 1128449
- coverage: Kyrgyzstan_BA_Aygirdjal 818114
- coverage: Cameroon_SMA.DG 1140138
- coverage: EEHG 1052093
- coverage: WSHG 858019
- coverage: PPN 847771
- coverage: WEHG 1140599
- coverage: Anatolia_N 1139031
- coverage: Iran_GanjDareh_N 1057358
- coverage: Russia_UstBelaya_Angara 1072574
- coverage: ONG.SG 1143397
- coverage: Botai 926654
- coverage: CHG 1149558
- dof (jackknife): 621.860
- numsnps used: 1150509
- codimension 1
- f4info:
- f4rank: 2 dof: 8 chisq: 7.844 tail: 0.448838875 dofdiff: 10 chisqdiff: -7.844 taildiff: 1
- B:
- scale 1.000 1.000
- EEHG 1.507 0.033
- WSHG 1.197 -1.169
- PPN 0.259 1.318
- WEHG 1.823 1.560
- Anatolia_N 0.614 1.422
- Iran_GanjDareh_N -1.050 -0.449
- Russia_UstBelaya_Angara 0.480 -0.850
- ONG.SG 0.124 -0.445
- Botai 1.076 -1.148
- CHG -0.152 0.028
- A:
- scale 580.637 1114.597
- Uzbekistan_BA_Dzharkutan1 -0.217 0.219
- Russia_MLBA_Sintashta 1.419 0.799
- Kyrgyzstan_BA_Aygirdjal 0.969 -1.521
- full rank
- f4info:
- f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 8 chisqdiff: 7.844 taildiff: 0.448838875
- B:
- scale 2111.860 377.817 505.183
- EEHG -0.611 1.503 1.354
- WSHG -1.512 0.799 1.796
- PPN -0.138 0.539 -0.781
- WEHG -1.123 2.070 0.403
- Anatolia_N -0.132 0.926 -0.508
- Iran_GanjDareh_N 0.550 -1.082 -0.582
- Russia_UstBelaya_Angara -1.718 0.074 0.782
- ONG.SG -0.796 -0.079 0.310
- Botai -1.461 0.682 1.680
- CHG -0.140 -0.149 -0.204
- A:
- scale 1.732 1.732 1.732
- Uzbekistan_BA_Dzharkutan1 1.732 0.000 0.000
- Russia_MLBA_Sintashta 0.000 1.732 0.000
- Kyrgyzstan_BA_Aygirdjal 0.000 0.000 1.732
- best coefficients: 0.830 0.033 0.137
- Jackknife mean: 0.829522307 0.033116092 0.137361600
- std. errors: 0.045 0.031 0.049
- error covariance (* 1,000,000)
- 2020 -304 -1717
- -304 940 -636
- -1717 -636 2353
- summ: Alalakh_MLBA_outlier 3 0.448839 0.830 0.033 0.137 2020 -304 -1717 940 -636 ...
- 2353
- fixed pat wt dof chisq tail prob
- 000 0 8 7.844 0.448839 0.830 0.033 0.137
- 001 1 9 15.920 0.0685702 0.931 0.069 0.000
- 010 1 9 9.017 0.435669 0.840 0.000 0.160
- 100 1 9 242.342 0 0.000 0.006 0.994
- 011 2 10 20.965 0.0213416 1.000 0.000 0.000
- 101 2 10 970.596 0 0.000 1.000 0.000
- 110 2 10 242.405 0 0.000 0.000 1.000
- best pat: 000 0.448839 - -
- best pat: 010 0.435669 chi(nested): 1.173 p-value for nested model: 0.278737
- best pat: 011 0.0213416 chi(nested): 11.947 p-value for nested model: 0.000547287
- coeffs: 0.830 0.033 0.137
- ## dscore:: f_4(Base, Fit, Rbase, right2)
- ## genstat:: f_4(Base, Fit, right1, right2)
- details: Uzbekistan_BA_Dzharkutan1 EEHG -0.000289 -0.875154
- details: Russia_MLBA_Sintashta EEHG 0.003978 11.919917
- details: Kyrgyzstan_BA_Aygirdjal EEHG 0.002681 7.027717
- dscore: EEHG f4: 0.000259 Z: 0.804161
- details: Uzbekistan_BA_Dzharkutan1 WSHG -0.000716 -2.044901
- details: Russia_MLBA_Sintashta WSHG 0.002114 5.844662
- details: Kyrgyzstan_BA_Aygirdjal WSHG 0.003555 8.156120
- dscore: WSHG f4: -0.000037 Z: -0.108019
- details: Uzbekistan_BA_Dzharkutan1 PPN -0.000065 -0.206418
- details: Russia_MLBA_Sintashta PPN 0.001426 4.619861
- details: Kyrgyzstan_BA_Aygirdjal PPN -0.001546 -4.349516
- dscore: PPN f4: -0.000218 Z: -0.708490
- details: Uzbekistan_BA_Dzharkutan1 WEHG -0.000532 -1.712054
- details: Russia_MLBA_Sintashta WEHG 0.005479 17.795654
- details: Kyrgyzstan_BA_Aygirdjal WEHG 0.000797 2.172393
- dscore: WEHG f4: -0.000150 Z: -0.492117
- details: Uzbekistan_BA_Dzharkutan1 Anatolia_N -0.000063 -0.221799
- details: Russia_MLBA_Sintashta Anatolia_N 0.002452 8.966099
- details: Kyrgyzstan_BA_Aygirdjal Anatolia_N -0.001006 -3.071845
- dscore: Anatolia_N f4: -0.000108 Z: -0.392460
- details: Uzbekistan_BA_Dzharkutan1 Iran_GanjDareh_N 0.000261 0.892786
- details: Russia_MLBA_Sintashta Iran_GanjDareh_N -0.002864 -9.862766
- details: Kyrgyzstan_BA_Aygirdjal Iran_GanjDareh_N -0.001152 -3.362319
- dscore: Iran_GanjDareh_N f4: -0.000037 Z: -0.128083
- details: Uzbekistan_BA_Dzharkutan1 Russia_UstBelaya_Angara -0.000814 -2.704297
- details: Russia_MLBA_Sintashta Russia_UstBelaya_Angara 0.000196 0.649588
- details: Kyrgyzstan_BA_Aygirdjal Russia_UstBelaya_Angara 0.001549 4.309108
- dscore: Russia_UstBelaya_Angara f4: -0.000457 Z: -1.546502
- details: Uzbekistan_BA_Dzharkutan1 ONG.SG -0.000377 -1.210528
- details: Russia_MLBA_Sintashta ONG.SG -0.000209 -0.640317
- details: Kyrgyzstan_BA_Aygirdjal ONG.SG 0.000613 1.706281
- dscore: ONG.SG f4: -0.000236 Z: -0.771207
- details: Uzbekistan_BA_Dzharkutan1 Botai -0.000692 -1.926305
- details: Russia_MLBA_Sintashta Botai 0.001804 4.992308
- details: Kyrgyzstan_BA_Aygirdjal Botai 0.003325 8.032112
- dscore: Botai f4: -0.000059 Z: -0.168796
- details: Uzbekistan_BA_Dzharkutan1 CHG -0.000066 -0.200375
- details: Russia_MLBA_Sintashta CHG -0.000393 -1.234659
- details: Kyrgyzstan_BA_Aygirdjal CHG -0.000404 -1.094789
- dscore: CHG f4: -0.000123 Z: -0.382766
- gendstat: Cameroon_SMA.DG EEHG 0.804
- gendstat: Cameroon_SMA.DG WSHG -0.108
- gendstat: Cameroon_SMA.DG PPN -0.708
- gendstat: Cameroon_SMA.DG WEHG -0.492
- gendstat: Cameroon_SMA.DG Anatolia_N -0.392
- gendstat: Cameroon_SMA.DG Iran_GanjDareh_N -0.128
- gendstat: Cameroon_SMA.DG Russia_UstBelaya_Angara -1.547
- gendstat: Cameroon_SMA.DG ONG.SG -0.771
- gendstat: Cameroon_SMA.DG Botai -0.169
- gendstat: Cameroon_SMA.DG CHG -0.383
- gendstat: EEHG WSHG -1.064
- gendstat: EEHG PPN -1.476
- gendstat: EEHG WEHG -1.726
- gendstat: EEHG Anatolia_N -1.405
- gendstat: EEHG Iran_GanjDareh_N -0.979
- gendstat: EEHG Russia_UstBelaya_Angara -2.526
- gendstat: EEHG ONG.SG -1.565
- gendstat: EEHG Botai -1.182
- gendstat: EEHG CHG -1.194
- gendstat: WSHG PPN -0.513
- gendstat: WSHG WEHG -0.394
- gendstat: WSHG Anatolia_N -0.240
- gendstat: WSHG Iran_GanjDareh_N 0.002
- gendstat: WSHG Russia_UstBelaya_Angara -1.421
- gendstat: WSHG ONG.SG -0.597
- gendstat: WSHG Botai -0.078
- gendstat: WSHG CHG -0.245
- gendstat: PPN WEHG 0.254
- gendstat: PPN Anatolia_N 0.515
- gendstat: PPN Iran_GanjDareh_N 0.616
- gendstat: PPN Russia_UstBelaya_Angara -0.765
- gendstat: PPN ONG.SG -0.054
- gendstat: PPN Botai 0.435
- gendstat: PPN CHG 0.309
- gendstat: WEHG Anatolia_N 0.206
- gendstat: WEHG Iran_GanjDareh_N 0.424
- gendstat: WEHG Russia_UstBelaya_Angara -1.159
- gendstat: WEHG ONG.SG -0.291
- gendstat: WEHG Botai 0.312
- gendstat: WEHG CHG 0.094
- gendstat: Anatolia_N Iran_GanjDareh_N 0.305
- gendstat: Anatolia_N Russia_UstBelaya_Angara -1.339
- gendstat: Anatolia_N ONG.SG -0.456
- gendstat: Anatolia_N Botai 0.161
- gendstat: Anatolia_N CHG -0.058
- gendstat: Iran_GanjDareh_N Russia_UstBelaya_Angara -1.506
- gendstat: Iran_GanjDareh_N ONG.SG -0.688
- gendstat: Iran_GanjDareh_N Botai -0.069
- gendstat: Iran_GanjDareh_N CHG -0.307
- gendstat: Russia_UstBelaya_Angara ONG.SG 0.866
- gendstat: Russia_UstBelaya_Angara Botai 1.434
- gendstat: Russia_UstBelaya_Angara CHG 1.051
- gendstat: ONG.SG Botai 0.539
- gendstat: ONG.SG CHG 0.342
- gendstat: Botai CHG -0.184
- ##end of qpAdm: 384.116 seconds cpu 1294.545 Mbytes in use
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