#!/bin/bash

cd /data/reddylab/projects/GGR/data
FILES=($(find chip_seq rna_seq dnase_seq chip_seq_tag_tf -type f -iname "*fastq"))
sbatch \
    -pnew,all \
    --array=0-$((${#FILES[*]}-1))%20 \
    <<EOF
#!/bin/bash
#SBATCH --output=/data/reddylab/tmp/gzip_processed_read_files_%A_%a.out

FILES=(${FILES[@]})
FILE=\${FILES[\${SLURM_ARRAY_TASK_ID}]}

if [[ ! -e \${FILE}.gz ]];
then
    gzip \${FILE}
fi
printf "\$(uname -n)\t\${FILE}\tDone.\n"

EOF