Moving header files to include/mlpack/
[  0%] Built target mlpack_headers
[  0%] Updating arma_config.hpp (if necessary)
[  0%] Built target mlpack_arma_config
[ 27%] Built target mlpack
running build
running build_py
copying /home/himal/Downloads/builds/mlpack-3.0.3/build/src/mlpack/bindings/python/mlpack/__init__.py -> build/lib/mlpack
copying /home/himal/Downloads/builds/mlpack-3.0.3/build/src/mlpack/bindings/python/mlpack/matrix_utils.py -> build/lib/mlpack
[ 27%] Built target python_copy
[ 29%] Built target generate_pyx_sparse_coding
[ 29%] Building Cython binding sparse_coding.so...
running build_ext
skipping '/home/himal/Downloads/builds/mlpack-3.0.3/build/src/mlpack/bindings/python/mlpack/sparse_coding.cpp' Cython extension (up-to-date)
[ 29%] Built target build_pyx_sparse_coding
[ 29%] Built target generate_pyx_test_python_binding
[ 29%] Building Cython binding test_python_binding.so...
running build_ext
skipping '/home/himal/Downloads/builds/mlpack-3.0.3/build/src/mlpack/bindings/python/mlpack/test_python_binding.cpp' Cython extension (up-to-date)
[ 29%] Built target build_pyx_test_python_binding
[ 31%] Built target generate_pyx_adaboost
[ 31%] Building Cython binding adaboost.so...
running build_ext
skipping '/home/himal/Downloads/builds/mlpack-3.0.3/build/src/mlpack/bindings/python/mlpack/adaboost.cpp' Cython extension (up-to-date)
[ 31%] Built target build_pyx_adaboost
[ 33%] Built target generate_pyx_approx_kfn
[ 33%] Building Cython binding approx_kfn.so...
running build_ext
skipping '/home/himal/Downloads/builds/mlpack-3.0.3/build/src/mlpack/bindings/python/mlpack/approx_kfn.cpp' Cython extension (up-to-date)
[ 33%] Built target build_pyx_approx_kfn
[ 33%] Built target generate_pyx_cf
[ 33%] Building Cython binding cf.so...
running build_ext
skipping '/home/himal/Downloads/builds/mlpack-3.0.3/build/src/mlpack/bindings/python/mlpack/cf.cpp' Cython extension (up-to-date)
[ 33%] Built target build_pyx_cf
[ 35%] Built target generate_pyx_dbscan
[ 35%] Building Cython binding dbscan.so...
running build_ext
skipping '/home/himal/Downloads/builds/mlpack-3.0.3/build/src/mlpack/bindings/python/mlpack/dbscan.cpp' Cython extension (up-to-date)
[ 35%] Built target build_pyx_dbscan
[ 37%] Built target generate_pyx_decision_stump
[ 37%] Building Cython binding decision_stump.so...
running build_ext
skipping '/home/himal/Downloads/builds/mlpack-3.0.3/build/src/mlpack/bindings/python/mlpack/decision_stump.cpp' Cython extension (up-to-date)
[ 37%] Built target build_pyx_decision_stump
[ 39%] Built target generate_pyx_decision_tree
[ 41%] Building Cython binding decision_tree.so...
running build_ext
skipping '/home/himal/Downloads/builds/mlpack-3.0.3/build/src/mlpack/bindings/python/mlpack/decision_tree.cpp' Cython extension (up-to-date)
[ 41%] Built target build_pyx_decision_tree
[ 41%] Built target generate_pyx_det
[ 41%] Building Cython binding det.so...
running build_ext
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[ 41%] Built target build_pyx_det
[ 43%] Built target generate_pyx_emst
[ 43%] Building Cython binding emst.so...
running build_ext
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[ 43%] Built target build_pyx_emst
[ 45%] Built target generate_pyx_fastmks
[ 45%] Building Cython binding fastmks.so...
running build_ext
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[ 45%] Built target build_pyx_fastmks
[ 47%] Built target generate_pyx_gmm_train
[ 47%] Building Cython binding gmm_train.so...
running build_ext
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[ 47%] Built target build_pyx_gmm_train
[ 47%] Built target generate_pyx_gmm_probability
[ 49%] Building Cython binding gmm_probability.so...
running build_ext
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[ 49%] Built target build_pyx_gmm_probability
[ 50%] Built target generate_pyx_gmm_generate
[ 50%] Building Cython binding gmm_generate.so...
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[ 50%] Built target build_pyx_gmm_generate
[ 52%] Built target generate_pyx_hmm_train
[ 52%] Building Cython binding hmm_train.so...
running build_ext
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[ 52%] Built target build_pyx_hmm_train
[ 52%] Built target generate_pyx_hmm_loglik
[ 52%] Building Cython binding hmm_loglik.so...
running build_ext
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[ 52%] Built target build_pyx_hmm_loglik
[ 54%] Built target generate_pyx_hmm_viterbi
[ 54%] Building Cython binding hmm_viterbi.so...
running build_ext
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[ 54%] Built target build_pyx_hmm_viterbi
[ 56%] Built target generate_pyx_hmm_generate
[ 56%] Building Cython binding hmm_generate.so...
running build_ext
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[ 56%] Built target build_pyx_hmm_generate
[ 58%] Built target generate_pyx_hoeffding_tree
[ 60%] Building Cython binding hoeffding_tree.so...
running build_ext
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[ 60%] Built target build_pyx_hoeffding_tree
[ 60%] Built target generate_pyx_kernel_pca
[ 60%] Building Cython binding kernel_pca.so...
running build_ext
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[ 60%] Built target build_pyx_kernel_pca
[ 62%] Built target generate_pyx_kmeans
[ 62%] Building Cython binding kmeans.so...
running build_ext
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[ 62%] Built target build_pyx_kmeans
[ 64%] Built target generate_pyx_lars
[ 64%] Building Cython binding lars.so...
running build_ext
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[ 64%] Built target build_pyx_lars
[ 66%] Built target generate_pyx_linear_regression
[ 66%] Building Cython binding linear_regression.so...
running build_ext
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[ 66%] Built target build_pyx_linear_regression
[ 68%] Built target generate_pyx_local_coordinate_coding
[ 68%] Building Cython binding local_coordinate_coding.so...
running build_ext
skipping '/home/himal/Downloads/builds/mlpack-3.0.3/build/src/mlpack/bindings/python/mlpack/local_coordinate_coding.cpp' Cython extension (up-to-date)
[ 68%] Built target build_pyx_local_coordinate_coding
[ 68%] Built target generate_pyx_logistic_regression
[ 68%] Building Cython binding logistic_regression.so...
running build_ext
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[ 68%] Built target build_pyx_logistic_regression
[ 70%] Built target generate_pyx_lsh
[ 70%] Building Cython binding lsh.so...
running build_ext
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[ 70%] Built target build_pyx_lsh
[ 72%] Built target generate_pyx_mean_shift
[ 74%] Building Cython binding mean_shift.so...
running build_ext
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[ 74%] Built target build_pyx_mean_shift
[ 74%] Built target generate_pyx_nbc
[ 74%] Building Cython binding nbc.so...
running build_ext
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[ 74%] Built target build_pyx_nbc
[ 76%] Built target generate_pyx_nca
[ 76%] Building Cython binding nca.so...
running build_ext
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[ 76%] Built target build_pyx_nca
[ 78%] Built target generate_pyx_knn
[ 78%] Building Cython binding knn.so...
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[ 78%] Built target build_pyx_knn
[ 80%] Built target generate_pyx_kfn
[ 80%] Building Cython binding kfn.so...
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[ 80%] Built target build_pyx_kfn
[ 82%] Built target generate_pyx_nmf
[ 82%] Building Cython binding nmf.so...
running build_ext
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[ 82%] Built target build_pyx_nmf
[ 84%] Built target generate_pyx_pca
[ 84%] Building Cython binding pca.so...
running build_ext
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[ 84%] Built target build_pyx_pca
[ 84%] Built target generate_pyx_perceptron
[ 86%] Building Cython binding perceptron.so...
running build_ext
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[ 86%] Built target build_pyx_perceptron
[ 88%] Built target generate_pyx_preprocess_split
[ 88%] Building Cython binding preprocess_split.so...
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[ 88%] Built target build_pyx_preprocess_split
[ 90%] Built target generate_pyx_preprocess_describe
[ 90%] Building Cython binding preprocess_describe.so...
running build_ext
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[ 90%] Built target build_pyx_preprocess_describe
[ 92%] Built target generate_pyx_preprocess_binarize
[ 92%] Building Cython binding preprocess_binarize.so...
running build_ext
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[ 92%] Built target build_pyx_preprocess_binarize
[ 92%] Built target generate_pyx_radical
[ 92%] Building Cython binding radical.so...
running build_ext
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[ 92%] Built target build_pyx_radical
[ 94%] Built target generate_pyx_random_forest
[ 94%] Building Cython binding random_forest.so...
running build_ext
skipping '/home/himal/Downloads/builds/mlpack-3.0.3/build/src/mlpack/bindings/python/mlpack/random_forest.cpp' Cython extension (up-to-date)
[ 94%] Built target build_pyx_random_forest
[ 94%] Built target generate_pyx_krann
[ 96%] Building Cython binding krann.so...
running build_ext
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[ 96%] Built target build_pyx_krann
[ 98%] Built target generate_pyx_softmax_regression
[100%] Building Cython binding softmax_regression.so...
running build_ext
skipping '/home/himal/Downloads/builds/mlpack-3.0.3/build/src/mlpack/bindings/python/mlpack/softmax_regression.cpp' Cython extension (up-to-date)
[100%] Built target build_pyx_softmax_regression
running build_ext
cythoning /home/himal/Downloads/builds/mlpack-3.0.3/build/src/mlpack/bindings/python/mlpack/arma_numpy.pyx to /home/himal/Downloads/builds/mlpack-3.0.3/build/src/mlpack/bindings/python/mlpack/arma_numpy.cpp
building 'mlpack.arma_numpy' extension
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fno-plt -flto -fuse-linker-plugin -ffat-lto-objects -flto-partition=none -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fno-plt -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fno-plt -fPIC -I/usr/lib/python3.7/site-packages/numpy/core/include -I/home/himal/Downloads/builds/mlpack-3.0.3/build/src/mlpack/bindings/python/ -I/home/himal/Downloads/builds/mlpack-3.0.3/src -I/usr/include -I/usr/include -I/home/himal/Downloads/builds/mlpack-3.0.3/build/src/mlpack/.. -I/usr/include/python3.7m -c /home/himal/Downloads/builds/mlpack-3.0.3/build/src/mlpack/bindings/python/mlpack/arma_numpy.cpp -o build/temp.linux-x86_64-3.7/home/himal/Downloads/builds/mlpack-3.0.3/build/src/mlpack/bindings/python/mlpack/arma_numpy.o -DBINDING_TYPE=BINDING_TYPE_PYX -std=c++11 -Wall -Wextra -ftemplate-depth=1000 -O3 -fopenmp
In file included from /usr/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1821,
                 from /usr/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18,
                 from /usr/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from /home/himal/Downloads/builds/mlpack-3.0.3/build/src/mlpack/bindings/python/mlpack/arma_numpy.cpp:581:
/usr/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it by " \
  ^~~~~~~
/home/himal/Downloads/builds/mlpack-3.0.3/build/src/mlpack/bindings/python/mlpack/arma_numpy.cpp: In function ‘PyObject* __Pyx_PyCFunction_FastCall(PyObject*, PyObject**, Py_ssize_t)’:
/home/himal/Downloads/builds/mlpack-3.0.3/build/src/mlpack/bindings/python/mlpack/arma_numpy.cpp:7531:54: warning: cast between incompatible function types from ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} to ‘_PyCFunctionFastWithKeywords’ {aka ‘_object* (*)(_object*, _object* const*, long int, _object*)’} [-Wcast-function-type]
         return (*((__Pyx_PyCFunctionFastWithKeywords)meth)) (self, args, nargs, NULL);
                                                      ^~~~
/home/himal/Downloads/builds/mlpack-3.0.3/build/src/mlpack/bindings/python/mlpack/arma_numpy.cpp:7533:42: warning: cast between incompatible function types from ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} to ‘_PyCFunctionFast’ {aka ‘_object* (*)(_object*, _object* const*, long int)’} [-Wcast-function-type]
         return (*((__Pyx_PyCFunctionFast)meth)) (self, args, nargs);
                                          ^~~~
g++ -pthread -shared -Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now -flto -fuse-linker-plugin -ffat-lto-objects -flto-partition=none -Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now build/temp.linux-x86_64-3.7/home/himal/Downloads/builds/mlpack-3.0.3/build/src/mlpack/bindings/python/mlpack/arma_numpy.o -L/home/himal/Downloads/builds/mlpack-3.0.3/build/lib/ -L/usr/lib -lmlpack -lboost_serialization -lpython3.7m -o build/lib.linux-x86_64-3.7/mlpack/arma_numpy.cpython-37m-x86_64-linux-gnu.so -fopenmp
skipping '/home/himal/Downloads/builds/mlpack-3.0.3/build/src/mlpack/bindings/python/mlpack/test_python_binding.cpp' Cython extension (up-to-date)
skipping '/home/himal/Downloads/builds/mlpack-3.0.3/build/src/mlpack/bindings/python/mlpack/adaboost.cpp' Cython extension (up-to-date)
skipping '/home/himal/Downloads/builds/mlpack-3.0.3/build/src/mlpack/bindings/python/mlpack/approx_kfn.cpp' Cython extension (up-to-date)
skipping '/home/himal/Downloads/builds/mlpack-3.0.3/build/src/mlpack/bindings/python/mlpack/cf.cpp' Cython extension (up-to-date)
skipping '/home/himal/Downloads/builds/mlpack-3.0.3/build/src/mlpack/bindings/python/mlpack/dbscan.cpp' Cython extension (up-to-date)
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skipping '/home/himal/Downloads/builds/mlpack-3.0.3/build/src/mlpack/bindings/python/mlpack/krann.cpp' Cython extension (up-to-date)
skipping '/home/himal/Downloads/builds/mlpack-3.0.3/build/src/mlpack/bindings/python/mlpack/softmax_regression.cpp' Cython extension (up-to-date)
skipping '/home/himal/Downloads/builds/mlpack-3.0.3/build/src/mlpack/bindings/python/mlpack/sparse_coding.cpp' Cython extension (up-to-date)
[100%] Built target python