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yamnaya samara geoksyur pass

misnomer001
Feb 6th, 2020
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  1. allsnps: YES
  2. ## qpAdm version: 1000
  3. seed: 1629211615
  4. read 1073741824 bytes
  5. read 1339052118 bytes
  6. packed geno read OK
  7. end of inpack
  8.  
  9. left pops:
  10. Russia_Yamnaya_Samara
  11. EEHG
  12. Ukraine_Globular_Amphora
  13. Georgia_Kotias.SG
  14. Geoksyur_EN
  15.  
  16. right pops:
  17. Russia_MA1_HG
  18. Italy_Villabruna
  19. Russia_Kostenki14
  20. Belgium_GoyetQ116
  21. Pinarbasi
  22. Iberia_ElMiron
  23. Czech_Vestonice16
  24. Morocco_Iberomaurusian
  25. Russia_Shamanka_EN.SG
  26. Georgia_Satsurblia.SG
  27. Ganj_Dareh_N
  28. Onge.DG
  29. PPN
  30.  
  31. 0 Russia_Yamnaya_Samara 10
  32. 1 EEHG 5
  33. 2 Ukraine_Globular_Amphora 3
  34. 3 Georgia_Kotias.SG 1
  35. 4 Geoksyur_EN 21
  36. 5 Russia_MA1_HG 1
  37. 6 Italy_Villabruna 1
  38. 7 Russia_Kostenki14 1
  39. 8 Belgium_GoyetQ116 1
  40. 9 Pinarbasi 1
  41. 10 Iberia_ElMiron 1
  42. 11 Czech_Vestonice16 1
  43. 12 Morocco_Iberomaurusian 6
  44. 13 Russia_Shamanka_EN.SG 10
  45. 14 Georgia_Satsurblia.SG 1
  46. 15 Ganj_Dareh_N 8
  47. 16 Onge.DG 2
  48. 17 PPN 8
  49. jackknife block size: 0.050
  50. snps: 1150470 indivs: 82
  51. number of blocks for block jackknife: 552
  52. ## ncols: 1150470
  53. coverage: Russia_Yamnaya_Samara 1123907
  54. coverage: EEHG 1052093
  55. coverage: Ukraine_Globular_Amphora 1036892
  56. coverage: Georgia_Kotias.SG 1149097
  57. coverage: Geoksyur_EN 1018577
  58. coverage: Russia_MA1_HG 805960
  59. coverage: Italy_Villabruna 883779
  60. coverage: Russia_Kostenki14 1068326
  61. coverage: Belgium_GoyetQ116 765579
  62. coverage: Pinarbasi 892975
  63. coverage: Iberia_ElMiron 626974
  64. coverage: Czech_Vestonice16 732091
  65. coverage: Morocco_Iberomaurusian 1101342
  66. coverage: Russia_Shamanka_EN.SG 1149998
  67. coverage: Georgia_Satsurblia.SG 801311
  68. coverage: Ganj_Dareh_N 1057358
  69. coverage: Onge.DG 1120748
  70. coverage: PPN 835499
  71. dof (jackknife): 469.420
  72. numsnps used: 1150470
  73. codimension 1
  74. f4info:
  75. f4rank: 3 dof: 9 chisq: 8.929 tail: 0.443885774 dofdiff: 11 chisqdiff: -8.929 taildiff: 1
  76. B:
  77. scale 1.000 1.000 1.000
  78. Italy_Villabruna 0.665 1.663 1.188
  79. Russia_Kostenki14 0.838 0.345 0.051
  80. Belgium_GoyetQ116 0.692 0.407 0.109
  81. Pinarbasi 1.247 0.976 0.551
  82. Iberia_ElMiron 0.647 0.895 0.570
  83. Czech_Vestonice16 0.723 0.584 -0.023
  84. Morocco_Iberomaurusian 1.236 0.163 -0.192
  85. Russia_Shamanka_EN.SG 0.678 -0.337 -0.044
  86. Georgia_Satsurblia.SG 1.125 -1.789 1.669
  87. Ganj_Dareh_N 1.346 -1.752 -2.573
  88. Onge.DG 0.895 -0.440 -0.338
  89. PPN 1.420 0.502 -0.622
  90. A:
  91. scale 278.850 612.904 1447.395
  92. EEHG -0.967 0.457 -0.094
  93. Ukraine_Globular_Amphora 1.331 1.358 -0.110
  94. Georgia_Kotias.SG 0.958 -1.281 1.525
  95. Geoksyur_EN 0.612 -0.553 -1.286
  96.  
  97.  
  98. full rank
  99. f4info:
  100. f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 9 chisqdiff: 8.929 taildiff: 0.443885774
  101. B:
  102. scale 279.392 187.424 250.319 361.166
  103. Italy_Villabruna -0.326 1.291 0.048 -0.374
  104. Russia_Kostenki14 -0.766 0.913 0.568 0.550
  105. Belgium_GoyetQ116 -0.575 0.813 0.450 0.404
  106. Pinarbasi -1.032 1.534 0.730 0.509
  107. Iberia_ElMiron -0.431 0.975 0.272 0.070
  108. Czech_Vestonice16 -0.555 0.924 0.366 0.426
  109. Morocco_Iberomaurusian -1.202 1.178 0.950 0.988
  110. Russia_Shamanka_EN.SG -0.701 0.498 0.805 0.706
  111. Georgia_Satsurblia.SG -1.510 0.262 2.374 0.962
  112. Ganj_Dareh_N -1.622 0.534 1.439 2.490
  113. Onge.DG -1.048 0.614 0.862 0.922
  114. PPN -1.213 1.522 0.856 1.223
  115. A:
  116. scale 2.000 2.000 2.000 2.000
  117. EEHG 2.000 0.000 0.000 0.000
  118. Ukraine_Globular_Amphora 0.000 2.000 0.000 0.000
  119. Georgia_Kotias.SG 0.000 0.000 2.000 0.000
  120. Geoksyur_EN 0.000 0.000 0.000 2.000
  121.  
  122.  
  123. best coefficients: 0.484 0.112 0.206 0.199
  124. Jackknife mean: 0.483692890 0.112025516 0.205280382 0.199001212
  125. std. errors: 0.016 0.016 0.023 0.024
  126.  
  127. error covariance (* 1,000,000)
  128. 265 -161 -54 -50
  129. -161 266 -23 -82
  130. -54 -23 517 -441
  131. -50 -82 -441 572
  132.  
  133.  
  134. summ: Russia_Yamnaya_Samara 4 0.443886 0.484 0.112 0.205 0.199 265 -161 -54 -50 266 ...
  135. -23 -82 517 -441 572
  136.  
  137. fixed pat wt dof chisq tail prob
  138. 0000 0 9 8.929 0.443886 0.484 0.112 0.206 0.199
  139. 0001 1 10 60.233 3.275e-09 0.496 0.126 0.378 0.000
  140. 0010 1 10 93.964 8.73437e-16 0.518 0.107 0.000 0.375
  141. 0100 1 10 50.875 1.84166e-07 0.554 0.000 0.222 0.224
  142. 1000 1 10 302.173 0 0.000 0.040 2.660 -1.700 infeasible
  143. 0011 2 11 546.581 0 0.789 0.211 0.000 0.000
  144. 0101 2 11 103.090 4.35649e-17 0.563 0.000 0.437 0.000
  145. 0110 2 11 125.187 1.63444e-21 0.587 0.000 0.000 0.413
  146. 1001 2 11 455.158 0 0.000 0.154 0.846 0.000
  147. 1010 2 11 791.001 0 0.000 0.478 0.000 0.522
  148. 1100 2 11 302.395 0 0.000 0.000 2.670 -1.670 infeasible
  149. 0111 3 12 613.619 0 1.000 0.000 0.000 0.000
  150. 1011 3 12 1237.248 0 0.000 1.000 0.000 0.000
  151. 1101 3 12 474.615 0 0.000 0.000 1.000 0.000
  152. 1110 3 12 1433.072 0 0.000 0.000 0.000 1.000
  153. best pat: 0000 0.443886 - -
  154. best pat: 0100 1.84166e-07 chi(nested): 41.946 p-value for nested model: 9.38123e-11
  155. best pat: 0101 4.35649e-17 chi(nested): 52.215 p-value for nested model: 4.97492e-13
  156. best pat: 1101 5.56262e-94 chi(nested): 371.525 p-value for nested model: 8.7127e-83
  157.  
  158. coeffs: 0.484 0.112 0.206 0.199
  159.  
  160. ## dscore:: f_4(Base, Fit, Rbase, right2)
  161. ## genstat:: f_4(Base, Fit, right1, right2)
  162.  
  163. details: EEHG Italy_Villabruna -0.001168 -3.298601
  164. details: Ukraine_Globular_Amphora Italy_Villabruna 0.006890 19.271713
  165. details: Georgia_Kotias.SG Italy_Villabruna 0.000190 0.421966
  166. details: Geoksyur_EN Italy_Villabruna -0.001036 -3.548829
  167. dscore: Italy_Villabruna f4: 0.000041 Z: 0.170688
  168.  
  169. details: EEHG Russia_Kostenki14 -0.002742 -6.871940
  170. details: Ukraine_Globular_Amphora Russia_Kostenki14 0.004870 12.972291
  171. details: Georgia_Kotias.SG Russia_Kostenki14 0.002269 4.718994
  172. details: Geoksyur_EN Russia_Kostenki14 0.001522 5.232808
  173. dscore: Russia_Kostenki14 f4: -0.000012 Z: -0.045377
  174.  
  175. details: EEHG Belgium_GoyetQ116 -0.002056 -6.172919
  176. details: Ukraine_Globular_Amphora Belgium_GoyetQ116 0.004337 13.398318
  177. details: Georgia_Kotias.SG Belgium_GoyetQ116 0.001796 4.234319
  178. details: Geoksyur_EN Belgium_GoyetQ116 0.001119 4.046283
  179. dscore: Belgium_GoyetQ116 f4: 0.000083 Z: 0.377884
  180.  
  181. details: EEHG Pinarbasi -0.003694 -10.765179
  182. details: Ukraine_Globular_Amphora Pinarbasi 0.008186 21.357452
  183. details: Georgia_Kotias.SG Pinarbasi 0.002917 6.254750
  184. details: Geoksyur_EN Pinarbasi 0.001410 4.801671
  185. dscore: Pinarbasi f4: 0.000011 Z: 0.044140
  186.  
  187. details: EEHG Iberia_ElMiron -0.001543 -4.858728
  188. details: Ukraine_Globular_Amphora Iberia_ElMiron 0.005201 17.113263
  189. details: Georgia_Kotias.SG Iberia_ElMiron 0.001086 2.861484
  190. details: Geoksyur_EN Iberia_ElMiron 0.000194 0.760938
  191. dscore: Iberia_ElMiron f4: 0.000098 Z: 0.462049
  192.  
  193. details: EEHG Czech_Vestonice16 -0.001987 -6.348698
  194. details: Ukraine_Globular_Amphora Czech_Vestonice16 0.004930 15.878458
  195. details: Georgia_Kotias.SG Czech_Vestonice16 0.001461 3.650025
  196. details: Geoksyur_EN Czech_Vestonice16 0.001179 4.606968
  197. dscore: Czech_Vestonice16 f4: 0.000126 Z: 0.595192
  198.  
  199. details: EEHG Morocco_Iberomaurusian -0.004302 -12.486946
  200. details: Ukraine_Globular_Amphora Morocco_Iberomaurusian 0.006284 17.791355
  201. details: Georgia_Kotias.SG Morocco_Iberomaurusian 0.003797 8.299808
  202. details: Geoksyur_EN Morocco_Iberomaurusian 0.002736 9.445607
  203. dscore: Morocco_Iberomaurusian f4: -0.000052 Z: -0.223495
  204.  
  205. details: EEHG Russia_Shamanka_EN.SG -0.002508 -8.327441
  206. details: Ukraine_Globular_Amphora Russia_Shamanka_EN.SG 0.002656 8.825607
  207. details: Georgia_Kotias.SG Russia_Shamanka_EN.SG 0.003216 7.531625
  208. details: Geoksyur_EN Russia_Shamanka_EN.SG 0.001956 7.857069
  209. dscore: Russia_Shamanka_EN.SG f4: 0.000135 Z: 0.652513
  210.  
  211. details: EEHG Georgia_Satsurblia.SG -0.005404 -16.741919
  212. details: Ukraine_Globular_Amphora Georgia_Satsurblia.SG 0.001396 4.297209
  213. details: Georgia_Kotias.SG Georgia_Satsurblia.SG 0.009482 18.559553
  214. details: Geoksyur_EN Georgia_Satsurblia.SG 0.002663 9.378593
  215. dscore: Georgia_Satsurblia.SG f4: 0.000022 Z: 0.099776
  216.  
  217. details: EEHG Ganj_Dareh_N -0.005807 -18.047608
  218. details: Ukraine_Globular_Amphora Ganj_Dareh_N 0.002850 8.700486
  219. details: Georgia_Kotias.SG Ganj_Dareh_N 0.005749 13.097183
  220. details: Geoksyur_EN Ganj_Dareh_N 0.006895 24.995440
  221. dscore: Ganj_Dareh_N f4: 0.000063 Z: 0.288505
  222.  
  223. details: EEHG Onge.DG -0.003751 -11.481736
  224. details: Ukraine_Globular_Amphora Onge.DG 0.003274 9.819895
  225. details: Georgia_Kotias.SG Onge.DG 0.003445 7.251723
  226. details: Geoksyur_EN Onge.DG 0.002554 9.191286
  227. dscore: Onge.DG f4: -0.000231 Z: -1.035369
  228.  
  229. details: EEHG PPN -0.004342 -14.297048
  230. details: Ukraine_Globular_Amphora PPN 0.008119 26.034532
  231. details: Georgia_Kotias.SG PPN 0.003418 8.900362
  232. details: Geoksyur_EN PPN 0.003387 12.687553
  233. dscore: PPN f4: 0.000186 Z: 0.877031
  234.  
  235. gendstat: Russia_MA1_HG Italy_Villabruna 0.171
  236. gendstat: Russia_MA1_HG Russia_Kostenki14 -0.045
  237. gendstat: Russia_MA1_HG Belgium_GoyetQ116 0.378
  238. gendstat: Russia_MA1_HG Pinarbasi 0.044
  239. gendstat: Russia_MA1_HG Iberia_ElMiron 0.462
  240. gendstat: Russia_MA1_HG Czech_Vestonice16 0.595
  241. gendstat: Russia_MA1_HG Morocco_Iberomaurusian -0.223
  242. gendstat: Russia_MA1_HG Russia_Shamanka_EN.SG 0.653
  243. gendstat: Russia_MA1_HG Georgia_Satsurblia.SG 0.100
  244. gendstat: Russia_MA1_HG Ganj_Dareh_N 0.289
  245. gendstat: Russia_MA1_HG Onge.DG -1.035
  246. gendstat: Russia_MA1_HG PPN 0.877
  247. gendstat: Italy_Villabruna Russia_Kostenki14 -0.225
  248. gendstat: Italy_Villabruna Belgium_GoyetQ116 0.190
  249. gendstat: Italy_Villabruna Pinarbasi -0.128
  250. gendstat: Italy_Villabruna Iberia_ElMiron 0.283
  251. gendstat: Italy_Villabruna Czech_Vestonice16 0.382
  252. gendstat: Italy_Villabruna Morocco_Iberomaurusian -0.431
  253. gendstat: Italy_Villabruna Russia_Shamanka_EN.SG 0.464
  254. gendstat: Italy_Villabruna Georgia_Satsurblia.SG -0.076
  255. gendstat: Italy_Villabruna Ganj_Dareh_N 0.114
  256. gendstat: Italy_Villabruna Onge.DG -1.211
  257. gendstat: Italy_Villabruna PPN 0.705
  258. gendstat: Russia_Kostenki14 Belgium_GoyetQ116 0.397
  259. gendstat: Russia_Kostenki14 Pinarbasi 0.089
  260. gendstat: Russia_Kostenki14 Iberia_ElMiron 0.478
  261. gendstat: Russia_Kostenki14 Czech_Vestonice16 0.618
  262. gendstat: Russia_Kostenki14 Morocco_Iberomaurusian -0.193
  263. gendstat: Russia_Kostenki14 Russia_Shamanka_EN.SG 0.759
  264. gendstat: Russia_Kostenki14 Georgia_Satsurblia.SG 0.143
  265. gendstat: Russia_Kostenki14 Ganj_Dareh_N 0.353
  266. gendstat: Russia_Kostenki14 Onge.DG -1.040
  267. gendstat: Russia_Kostenki14 PPN 0.915
  268. gendstat: Belgium_GoyetQ116 Pinarbasi -0.303
  269. gendstat: Belgium_GoyetQ116 Iberia_ElMiron 0.072
  270. gendstat: Belgium_GoyetQ116 Czech_Vestonice16 0.205
  271. gendstat: Belgium_GoyetQ116 Morocco_Iberomaurusian -0.626
  272. gendstat: Belgium_GoyetQ116 Russia_Shamanka_EN.SG 0.257
  273. gendstat: Belgium_GoyetQ116 Georgia_Satsurblia.SG -0.256
  274. gendstat: Belgium_GoyetQ116 Ganj_Dareh_N -0.098
  275. gendstat: Belgium_GoyetQ116 Onge.DG -1.415
  276. gendstat: Belgium_GoyetQ116 PPN 0.493
  277. gendstat: Pinarbasi Iberia_ElMiron 0.390
  278. gendstat: Pinarbasi Czech_Vestonice16 0.513
  279. gendstat: Pinarbasi Morocco_Iberomaurusian -0.287
  280. gendstat: Pinarbasi Russia_Shamanka_EN.SG 0.603
  281. gendstat: Pinarbasi Georgia_Satsurblia.SG 0.049
  282. gendstat: Pinarbasi Ganj_Dareh_N 0.254
  283. gendstat: Pinarbasi Onge.DG -1.099
  284. gendstat: Pinarbasi PPN 0.903
  285. gendstat: Iberia_ElMiron Czech_Vestonice16 0.135
  286. gendstat: Iberia_ElMiron Morocco_Iberomaurusian -0.726
  287. gendstat: Iberia_ElMiron Russia_Shamanka_EN.SG 0.182
  288. gendstat: Iberia_ElMiron Georgia_Satsurblia.SG -0.320
  289. gendstat: Iberia_ElMiron Ganj_Dareh_N -0.178
  290. gendstat: Iberia_ElMiron Onge.DG -1.530
  291. gendstat: Iberia_ElMiron PPN 0.434
  292. gendstat: Czech_Vestonice16 Morocco_Iberomaurusian -0.847
  293. gendstat: Czech_Vestonice16 Russia_Shamanka_EN.SG 0.042
  294. gendstat: Czech_Vestonice16 Georgia_Satsurblia.SG -0.434
  295. gendstat: Czech_Vestonice16 Ganj_Dareh_N -0.317
  296. gendstat: Czech_Vestonice16 Onge.DG -1.628
  297. gendstat: Czech_Vestonice16 PPN 0.303
  298. gendstat: Morocco_Iberomaurusian Russia_Shamanka_EN.SG 1.147
  299. gendstat: Morocco_Iberomaurusian Georgia_Satsurblia.SG 0.360
  300. gendstat: Morocco_Iberomaurusian Ganj_Dareh_N 0.655
  301. gendstat: Morocco_Iberomaurusian Onge.DG -0.972
  302. gendstat: Morocco_Iberomaurusian PPN 1.345
  303. gendstat: Russia_Shamanka_EN.SG Georgia_Satsurblia.SG -0.549
  304. gendstat: Russia_Shamanka_EN.SG Ganj_Dareh_N -0.450
  305. gendstat: Russia_Shamanka_EN.SG Onge.DG -2.416
  306. gendstat: Russia_Shamanka_EN.SG PPN 0.309
  307. gendstat: Georgia_Satsurblia.SG Ganj_Dareh_N 0.216
  308. gendstat: Georgia_Satsurblia.SG Onge.DG -1.197
  309. gendstat: Georgia_Satsurblia.SG PPN 0.776
  310. gendstat: Ganj_Dareh_N Onge.DG -1.703
  311. gendstat: Ganj_Dareh_N PPN 0.765
  312. gendstat: Onge.DG PPN 2.180
  313.  
  314. ##end of qpAdm: 251.016 seconds cpu 1441.317 Mbytes in use
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