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misnomer001

Ror sarazm

misnomer001
Sep 7th, 2022
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  1. qpAdm: parameter file: parqpadm
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. popleft: left
  5. popright: right
  6. details: YES
  7. allsnps: YES
  8. inbreed: YES
  9. oldallsnps: NO
  10. S1: newpush2
  11. S1X: newpush2
  12. indivname: newpush2.ind
  13. snpname: newpush2.snp
  14. genotypename: newpush2.geno
  15. ## qpAdm version: 1520
  16. seed: 1793025651
  17. inbreed set YES
  18. inbreed set YES
  19. tmp: /tmp/fsx.5309
  20.  
  21. left pops:
  22. Ror
  23. Tajikistan_C_Sarazm
  24. ONG.SG
  25. Russia_MLBA_Sintashta
  26.  
  27. right pops:
  28. Mbuti.DG
  29. EHG
  30. CHG
  31. Russia_Shamanka_Eneolithic.SG
  32. WSHG
  33. PPN
  34. Serbia_IronGates_Mesolithic
  35. Iran_GanjDareh_N
  36. Turkey_N
  37. Tarim_EMBA1
  38.  
  39. codimension 1
  40. f4info:
  41. f4rank: 2 dof: 7 chisq: 27.831 tail: 0.000235927863 dofdiff: 9 chisqdiff: -27.831 taildiff: 1
  42. B:
  43. scale 1.000 1.000
  44. EHG 1.165 0.732
  45. CHG 1.025 -0.947
  46. Russia_Shamanka_Eneolithic.SG -0.625 0.655
  47. WSHG 0.911 -0.068
  48. PPN 1.082 0.290
  49. Serbia_IronGates_Mesolithic 1.230 1.738
  50. Iran_GanjDareh_N 0.899 -1.879
  51. Turkey_N 1.172 0.510
  52. Tarim_EMBA1 0.713 -0.487
  53. A:
  54. scale 68.968 235.834
  55. Tajikistan_C_Sarazm 0.254 -1.294
  56. ONG.SG -1.538 0.455
  57. Russia_MLBA_Sintashta 0.755 1.058
  58.  
  59.  
  60. full rank
  61. f4info:
  62. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 7 chisqdiff: 27.831 taildiff: 0.000235927863
  63. B:
  64. scale 145.378 44.221 81.144
  65. EHG 0.060 -1.115 1.310
  66. CHG 1.164 -1.135 0.548
  67. Russia_Shamanka_Eneolithic.SG -0.685 0.672 -0.276
  68. WSHG 0.916 -0.892 0.879
  69. PPN 0.289 -1.087 1.060
  70. Serbia_IronGates_Mesolithic -0.501 -1.057 1.782
  71. Iran_GanjDareh_N 2.224 -1.039 0.173
  72. Turkey_N 0.266 -1.132 1.240
  73. Tarim_EMBA1 0.990 -0.751 0.519
  74. A:
  75. scale 1.732 1.732 1.732
  76. Tajikistan_C_Sarazm 1.732 0.000 0.000
  77. ONG.SG 0.000 1.732 0.000
  78. Russia_MLBA_Sintashta 0.000 0.000 1.732
  79.  
  80.  
  81. best coefficients: 0.387 0.245 0.368
  82. totmean: 0.387 0.245 0.368
  83. boot mean: 0.387 0.245 0.368
  84. std. errors: 0.014 0.007 0.012
  85.  
  86. error covariance (* 1,000,000)
  87. 183 -50 -132
  88. -50 51 0
  89. -132 0 133
  90.  
  91.  
  92. summ: Ror 3 0.000236 0.387 0.245 0.368 183 -50 -132 51 0 ...
  93. 133
  94.  
  95. fixed pat wt dof chisq tail prob
  96. 000 0 7 27.831 0.000235928 0.387 0.245 0.368
  97. 001 1 8 465.429 0 0.797 0.203 0.000
  98. 010 1 8 605.412 0 0.821 0.000 0.179
  99. 100 1 8 1003.985 0 0.000 0.370 0.630
  100. 011 2 9 654.934 0 1.000 0.000 0.000
  101. 101 2 9 2505.007 0 0.000 1.000 0.000
  102. 110 2 9 3512.129 0 0.000 0.000 1.000
  103. best pat: 000 0.000235928 - -
  104. best pat: 001 1.82534e-95 chi(nested): 437.598 p-value for nested model: 3.61648e-97
  105. best pat: 011 3.34998e-135 chi(nested): 189.505 p-value for nested model: 4.07757e-43
  106.  
  107. coeffs: 0.387 0.245 0.368
  108.  
  109. ## dscore:: f_4(Base, Fit, Rbase, right2)
  110. ## genstat:: f_4(Base, Fit, right1, right2)
  111.  
  112. details: Tajikistan_C_Sarazm EHG 0.000410 0.372090
  113. details: ONG.SG EHG -0.025206 -23.501449
  114. details: Russia_MLBA_Sintashta EHG 0.016146 28.335362
  115. dscore: EHG f4: -0.000069 Z: -0.117457
  116.  
  117. details: Tajikistan_C_Sarazm CHG 0.008006 7.469532
  118. details: ONG.SG CHG -0.025665 -23.547140
  119. details: Russia_MLBA_Sintashta CHG 0.006749 12.273431
  120. dscore: CHG f4: -0.000701 Z: -1.270669
  121.  
  122. details: Tajikistan_C_Sarazm Russia_Shamanka_Eneolithic.SG -0.004711 -4.842242
  123. details: ONG.SG Russia_Shamanka_Eneolithic.SG 0.015200 15.553799
  124. details: Russia_MLBA_Sintashta Russia_Shamanka_Eneolithic.SG -0.003403 -6.686988
  125. dscore: Russia_Shamanka_Eneolithic.SG f4: 0.000645 Z: 1.254735
  126.  
  127. details: Tajikistan_C_Sarazm WSHG 0.006303 5.311333
  128. details: ONG.SG WSHG -0.020163 -17.330806
  129. details: Russia_MLBA_Sintashta WSHG 0.010828 17.802121
  130. dscore: WSHG f4: 0.001489 Z: 2.386844
  131.  
  132. details: Tajikistan_C_Sarazm PPN 0.001989 1.917491
  133. details: ONG.SG PPN -0.024575 -22.910766
  134. details: Russia_MLBA_Sintashta PPN 0.013064 22.362100
  135. dscore: PPN f4: -0.000438 Z: -0.738851
  136.  
  137. details: Tajikistan_C_Sarazm Serbia_IronGates_Mesolithic -0.003443 -3.836105
  138. details: ONG.SG Serbia_IronGates_Mesolithic -0.023908 -24.122692
  139. details: Russia_MLBA_Sintashta Serbia_IronGates_Mesolithic 0.021956 43.843001
  140. dscore: Serbia_IronGates_Mesolithic f4: 0.000896 Z: 1.863916
  141.  
  142. details: Tajikistan_C_Sarazm Iran_GanjDareh_N 0.015300 16.228322
  143. details: ONG.SG Iran_GanjDareh_N -0.023491 -24.875120
  144. details: Russia_MLBA_Sintashta Iran_GanjDareh_N 0.002128 4.442077
  145. dscore: Iran_GanjDareh_N f4: 0.000954 Z: 1.968572
  146.  
  147. details: Tajikistan_C_Sarazm Turkey_N 0.001829 2.241754
  148. details: ONG.SG Turkey_N -0.025595 -28.378362
  149. details: Russia_MLBA_Sintashta Turkey_N 0.015285 33.814553
  150. dscore: Turkey_N f4: 0.000068 Z: 0.152568
  151.  
  152. details: Tajikistan_C_Sarazm Tarim_EMBA1 0.006812 5.743437
  153. details: ONG.SG Tarim_EMBA1 -0.016979 -15.531352
  154. details: Russia_MLBA_Sintashta Tarim_EMBA1 0.006399 10.860158
  155. dscore: Tarim_EMBA1 f4: 0.000835 Z: 1.370226
  156.  
  157. gendstat: Mbuti.DG EHG -0.117
  158. gendstat: Mbuti.DG CHG -1.271
  159. gendstat: Mbuti.DG Russia_Shamanka_Eneolithic.SG 1.255
  160. gendstat: Mbuti.DG WSHG 2.387
  161. gendstat: Mbuti.DG PPN -0.739
  162. gendstat: Mbuti.DG Serbia_IronGates_Mesolithic 1.864
  163. gendstat: Mbuti.DG Iran_GanjDareh_N 1.969
  164. gendstat: Mbuti.DG Turkey_N 0.153
  165. gendstat: Mbuti.DG Tarim_EMBA1 1.370
  166. gendstat: EHG CHG -1.021
  167. gendstat: EHG Russia_Shamanka_Eneolithic.SG 1.348
  168. gendstat: EHG WSHG 2.995
  169. gendstat: EHG PPN -0.574
  170. gendstat: EHG Serbia_IronGates_Mesolithic 2.162
  171. gendstat: EHG Iran_GanjDareh_N 1.770
  172. gendstat: EHG Turkey_N 0.265
  173. gendstat: EHG Tarim_EMBA1 1.767
  174. gendstat: CHG Russia_Shamanka_Eneolithic.SG 2.244
  175. gendstat: CHG WSHG 3.224
  176. gendstat: CHG PPN 0.417
  177. gendstat: CHG Serbia_IronGates_Mesolithic 3.020
  178. gendstat: CHG Iran_GanjDareh_N 3.224
  179. gendstat: CHG Turkey_N 1.603
  180. gendstat: CHG Tarim_EMBA1 2.298
  181. gendstat: Russia_Shamanka_Eneolithic.SG WSHG 1.537
  182. gendstat: Russia_Shamanka_Eneolithic.SG PPN -1.774
  183. gendstat: Russia_Shamanka_Eneolithic.SG Serbia_IronGates_Mesolithic 0.526
  184. gendstat: Russia_Shamanka_Eneolithic.SG Iran_GanjDareh_N 0.587
  185. gendstat: Russia_Shamanka_Eneolithic.SG Turkey_N -1.222
  186. gendstat: Russia_Shamanka_Eneolithic.SG Tarim_EMBA1 0.370
  187. gendstat: WSHG PPN -2.839
  188. gendstat: WSHG Serbia_IronGates_Mesolithic -1.117
  189. gendstat: WSHG Iran_GanjDareh_N -0.871
  190. gendstat: WSHG Turkey_N -2.490
  191. gendstat: WSHG Tarim_EMBA1 -1.379
  192. gendstat: PPN Serbia_IronGates_Mesolithic 2.364
  193. gendstat: PPN Iran_GanjDareh_N 2.343
  194. gendstat: PPN Turkey_N 1.048
  195. gendstat: PPN Tarim_EMBA1 1.834
  196. gendstat: Serbia_IronGates_Mesolithic Iran_GanjDareh_N 0.120
  197. gendstat: Serbia_IronGates_Mesolithic Turkey_N -2.274
  198. gendstat: Serbia_IronGates_Mesolithic Tarim_EMBA1 -0.113
  199. gendstat: Iran_GanjDareh_N Turkey_N -2.104
  200. gendstat: Iran_GanjDareh_N Tarim_EMBA1 -0.203
  201. gendstat: Turkey_N Tarim_EMBA1 1.345
  202.  
  203. removing /tmp/fsx.5309
  204. ##end of qpAdm: 4.897 seconds cpu 0.385 Mbytes in use
  205.  
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