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  1.  
  2.                         BEAST v2.2.0, 2002-2015
  3.              Bayesian Evolutionary Analysis Sampling Trees
  4.                        Designed and developed by
  5.  Remco Bouckaert, Alexei J. Drummond, Andrew Rambaut & Marc A. Suchard
  6.                                    
  7.                      Department of Computer Science
  8.                          University of Auckland
  9.                         remco@cs.auckland.ac.nz
  10.                         alexei@cs.auckland.ac.nz
  11.                                    
  12.                    Institute of Evolutionary Biology
  13.                         University of Edinburgh
  14.                            a.rambaut@ed.ac.uk
  15.                                    
  16.                     David Geffen School of Medicine
  17.                  University of California, Los Angeles
  18.                            msuchard@ucla.edu
  19.                                    
  20.                       Downloads, Help & Resources:
  21.                            http://beast2.org/
  22.                                    
  23.   Source code distributed under the GNU Lesser General Public License:
  24.                    http://github.com/CompEvol/beast2
  25.                                    
  26.                            BEAST developers:
  27.    Alex Alekseyenko, Trevor Bedford, Erik Bloomquist, Joseph Heled,
  28.  Sebastian Hoehna, Denise Kuehnert, Philippe Lemey, Wai Lok Sibon Li,
  29. Gerton Lunter, Sidney Markowitz, Vladimir Minin, Michael Defoin Platel,
  30.                  Oliver Pybus, Chieh-Hsi Wu, Walter Xie
  31.                                    
  32.                                Thanks to:
  33.           Roald Forsberg, Beth Shapiro and Korbinian Strimmer
  34.  
  35. File: 20150831.xml seed: 1441036415656 threads: 1
  36. Random number seed: 1441036415656
  37.  
  38. Failed to load BEAGLE library: no hmsbeagle64 in java.library.path
  39. Failed to load BEAGLE library: no hmsbeagle64 in java.library.path
  40. Failed to load BEAGLE library: no hmsbeagle64 in java.library.path
  41. Failed to load BEAGLE library: no hmsbeagle64 in java.library.path
  42. Failed to load BEAGLE library: no hmsbeagle64 in java.library.path
  43. Failed to load BEAGLE library: no hmsbeagle64 in java.library.path
  44. Failed to load BEAGLE library: no hmsbeagle64 in java.library.path
  45. Failed to load BEAGLE library: no hmsbeagle64 in java.library.path
  46. Failed to load BEAGLE library: no hmsbeagle64 in java.library.path
  47. java.lang.NumberFormatException: empty String
  48.         at sun.misc.FloatingDecimal.readJavaFormatString(Unknown Source)
  49.         at sun.misc.FloatingDecimal.parseDouble(Unknown Source)
  50.         at java.lang.Double.parseDouble(Unknown Source)
  51.         at sphericalGeo.TreeTraitMap.initAndValidate(Unknown Source)
  52.         at beast.util.XMLParser.initPlugins(Unknown Source)
  53.         at beast.util.XMLParser.parse(Unknown Source)
  54.         at beast.util.XMLParser.parseFile(Unknown Source)
  55.         at beast.app.BeastMCMC.parseArgs(Unknown Source)
  56.         at beast.app.beastapp.BeastMain.main(Unknown Source)
  57.         at beast.app.beastapp.BeastLauncher.main(Unknown Source)
  58.  
  59. Error 110 parsing the xml input file
  60.  
  61. validate and intialize error: empty String
  62.  
  63. Error detected about here:
  64.   <beast>
  65.       <run id='mcmc' spec='MCMC'>
  66.           <distribution id='posterior' spec='util.CompoundDistribution'>
  67.               <distribution id='likelihood' spec='util.CompoundDistribution'>
  68.                   <distribution id='slocationtreeLikelihood.newTrait' spec='sphericalGeo.ApproxMultivariateTraitLikelihood'>
  69.                       <data id='newTrait' spec='sphericalGeo.AlignmentFromTraitMap'>
  70.                           <traitMap id='traitmap.s:newTrait' spec='sphericalGeo.TreeTraitMap'>
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