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misnomer001

Katelai = ehg + chg + sisba2 + riang fail

misnomer001
Aug 22nd, 2022
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  1. qpAdm: parameter file: parqpadm
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. popleft: left
  5. popright: right
  6. details: YES
  7. allsnps: YES
  8. inbreed: YES
  9. oldallsnps: NO
  10. S1: newpush1
  11. S1X: newpush1
  12. indivname: newpush1.ind
  13. snpname: newpush1.snp
  14. genotypename: newpush1.geno
  15. ## qpAdm version: 1520
  16. seed: 1169232666
  17. inbreed set YES
  18. inbreed set YES
  19. tmp: /tmp/fsx.17098
  20.  
  21. left pops:
  22. Pakistan_Katelai_IA
  23. SiSBA2
  24. RIA.SG
  25. EHG
  26. CHG
  27.  
  28. right pops:
  29. Mbuti.DG
  30. Russia_Shamanka_Eneolithic.SG
  31. WSHG
  32. PPN
  33. Serbia_IronGates_Mesolithic
  34. Iran_GanjDareh_N
  35. Turkey_N
  36. ONG.SG
  37. Tarim_EMBA1
  38. Uzbekistan_Dzharkutan_BA_1
  39. Kazakhstan_MLBA_Dali
  40.  
  41. codimension 1
  42. f4info:
  43. f4rank: 3 dof: 7 chisq: 63.147 tail: 3.54078304e-11 dofdiff: 9 chisqdiff: -63.147 taildiff: 1
  44. B:
  45. scale 1.000 1.000 1.000
  46. Russia_Shamanka_Eneolithic.SG -0.833 1.812 1.672
  47. WSHG 1.547 0.931 -0.872
  48. PPN 0.616 -0.699 -0.036
  49. Serbia_IronGates_Mesolithic 1.493 0.590 1.463
  50. Iran_GanjDareh_N 0.402 -1.197 -1.088
  51. Turkey_N 0.694 -0.606 0.976
  52. ONG.SG -0.743 1.090 -0.325
  53. Tarim_EMBA1 1.318 1.025 -0.779
  54. Uzbekistan_Dzharkutan_BA_1 0.579 -0.987 -0.958
  55. Kazakhstan_MLBA_Dali 1.019 0.030 0.733
  56. A:
  57. scale 75.955 95.010 661.436
  58. SiSBA2 -0.262 0.087 -0.989
  59. RIA.SG -1.265 1.436 0.298
  60. EHG 1.526 1.291 0.072
  61. CHG 0.017 -0.516 1.711
  62.  
  63.  
  64. full rank
  65. f4info:
  66. f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 7 chisqdiff: 63.147 taildiff: 3.54078304e-11
  67. B:
  68. scale 189.029 42.961 42.022 176.639
  69. Russia_Shamanka_Eneolithic.SG -0.069 1.785 0.335 -1.348
  70. WSHG -0.988 -0.525 1.847 -1.493
  71. PPN -1.300 -0.938 0.052 0.047
  72. Serbia_IronGates_Mesolithic -1.536 -0.666 1.612 0.013
  73. Iran_GanjDareh_N -0.298 -1.086 -0.348 0.622
  74. Turkey_N -1.348 -0.890 0.208 0.633
  75. ONG.SG 0.462 1.221 -0.015 -1.434
  76. Tarim_EMBA1 -0.994 -0.310 1.693 -1.744
  77. Uzbekistan_Dzharkutan_BA_1 -0.723 -1.086 -0.097 0.178
  78. Kazakhstan_MLBA_Dali -1.157 -0.689 0.913 0.177
  79. A:
  80. scale 2.000 2.000 2.000 2.000
  81. SiSBA2 2.000 0.000 0.000 0.000
  82. RIA.SG 0.000 2.000 0.000 0.000
  83. EHG 0.000 0.000 2.000 0.000
  84. CHG 0.000 0.000 0.000 2.000
  85.  
  86.  
  87. best coefficients: 0.577 -0.001 0.094 0.330
  88. totmean: 0.577 -0.001 0.094 0.330
  89. boot mean: 0.574 -0.001 0.094 0.332
  90. std. errors: 0.063 0.013 0.007 0.051
  91.  
  92. error covariance (* 1,000,000)
  93. 3907 -741 -34 -3133
  94. -741 177 -3 566
  95. -34 -3 55 -19
  96. -3133 566 -19 2586
  97.  
  98.  
  99. summ: Pakistan_Katelai_IA 4 0.000000 0.574 -0.001 0.094 0.332 3907 -741 -34 -3133 177 ...
  100. -3 566 55 -19 2586
  101.  
  102. fixed pat wt dof chisq tail prob
  103. 0000 0 7 63.147 3.54078e-11 0.577 -0.001 0.094 0.330 infeasible
  104. 0001 1 8 124.297 4.29058e-23 0.976 -0.075 0.099 0.000 infeasible
  105. 0010 1 8 208.684 0 0.463 0.028 0.000 0.509
  106. 0100 1 8 62.629 1.41781e-10 0.569 0.000 0.094 0.337
  107. 1000 1 8 147.742 5.79701e-28 0.000 0.110 0.089 0.801
  108. 0011 2 9 229.565 0 1.091 -0.091 0.000 0.000 infeasible
  109. 0101 2 9 205.093 0 0.904 0.000 0.096 0.000
  110. 0110 2 9 548.143 0 -4.350 0.000 0.000 5.350 infeasible
  111. 1001 2 9 4559.885 0 0.000 0.180 0.820 0.000
  112. 1010 2 9 203.003 0 0.000 0.118 0.000 0.882
  113. 1100 2 9 309.406 0 0.000 0.000 0.096 0.904
  114. 0111 3 10 320.440 0 1.000 0.000 0.000 0.000
  115. 1011 3 10 8083.271 0 0.000 1.000 0.000 0.000
  116. 1101 3 10 4711.534 0 0.000 0.000 1.000 0.000
  117. 1110 3 10 347.196 0 0.000 0.000 0.000 1.000
  118. best pat: 0000 3.54078e-11 - -
  119. best pat: 0100 1.41781e-10 chi(nested): -0.518 p-value for nested model: -nan
  120. best pat: 1010 7.77319e-39 not nested
  121. best pat: 0111 7.35949e-63 not nested
  122.  
  123. coeffs: 0.577 -0.001 0.094 0.330
  124.  
  125. ## dscore:: f_4(Base, Fit, Rbase, right2)
  126. ## genstat:: f_4(Base, Fit, right1, right2)
  127.  
  128. details: SiSBA2 Russia_Shamanka_Eneolithic.SG -0.000364 -0.541490
  129. details: RIA.SG Russia_Shamanka_Eneolithic.SG 0.041554 50.830933
  130. details: EHG Russia_Shamanka_Eneolithic.SG 0.007963 8.922706
  131. details: CHG Russia_Shamanka_Eneolithic.SG -0.007632 -8.250068
  132. dscore: Russia_Shamanka_Eneolithic.SG f4: -0.002030 Z: -3.864301
  133.  
  134. details: SiSBA2 WSHG -0.005229 -6.142192
  135. details: RIA.SG WSHG -0.012231 -12.872774
  136. details: EHG WSHG 0.043947 38.485476
  137. details: CHG WSHG -0.008455 -7.559970
  138. dscore: WSHG f4: -0.001642 Z: -2.432996
  139.  
  140. details: SiSBA2 PPN -0.006876 -8.516108
  141. details: RIA.SG PPN -0.021825 -27.041892
  142. details: EHG PPN 0.001245 1.212467
  143. details: CHG PPN 0.000268 0.251595
  144. dscore: PPN f4: -0.003734 Z: -5.733609
  145.  
  146. details: SiSBA2 Serbia_IronGates_Mesolithic -0.008125 -11.525904
  147. details: RIA.SG Serbia_IronGates_Mesolithic -0.015493 -18.926492
  148. details: EHG Serbia_IronGates_Mesolithic 0.038365 41.249251
  149. details: CHG Serbia_IronGates_Mesolithic 0.000072 0.072282
  150. dscore: Serbia_IronGates_Mesolithic f4: -0.001024 Z: -1.818222
  151.  
  152. details: SiSBA2 Iran_GanjDareh_N -0.001574 -2.367136
  153. details: RIA.SG Iran_GanjDareh_N -0.025282 -34.038495
  154. details: EHG Iran_GanjDareh_N -0.008278 -9.361755
  155. details: CHG Iran_GanjDareh_N 0.003523 3.779571
  156. dscore: Iran_GanjDareh_N f4: -0.000495 Z: -0.907882
  157.  
  158. details: SiSBA2 Turkey_N -0.007130 -11.064127
  159. details: RIA.SG Turkey_N -0.020724 -29.391835
  160. details: EHG Turkey_N 0.004941 6.114286
  161. details: CHG Turkey_N 0.003582 4.028920
  162. dscore: Turkey_N f4: -0.002440 Z: -4.713415
  163.  
  164. details: SiSBA2 ONG.SG 0.002447 3.318709
  165. details: RIA.SG ONG.SG 0.028431 34.177508
  166. details: EHG ONG.SG -0.000362 -0.379146
  167. details: CHG ONG.SG -0.008120 -8.192831
  168. dscore: ONG.SG f4: -0.001337 Z: -2.342419
  169.  
  170. details: SiSBA2 Tarim_EMBA1 -0.005261 -6.629039
  171. details: RIA.SG Tarim_EMBA1 -0.007220 -8.159208
  172. details: EHG Tarim_EMBA1 0.040300 34.188445
  173. details: CHG Tarim_EMBA1 -0.009874 -8.576738
  174. dscore: Tarim_EMBA1 f4: -0.002480 Z: -3.904435
  175.  
  176. details: SiSBA2 Uzbekistan_Dzharkutan_BA_1 -0.003825 -5.895883
  177. details: RIA.SG Uzbekistan_Dzharkutan_BA_1 -0.025284 -36.372080
  178. details: EHG Uzbekistan_Dzharkutan_BA_1 -0.002302 -2.844486
  179. details: CHG Uzbekistan_Dzharkutan_BA_1 0.001007 1.137451
  180. dscore: Uzbekistan_Dzharkutan_BA_1 f4: -0.002060 Z: -4.014892
  181.  
  182. details: SiSBA2 Kazakhstan_MLBA_Dali -0.006122 -7.512847
  183. details: RIA.SG Kazakhstan_MLBA_Dali -0.016036 -18.038069
  184. details: EHG Kazakhstan_MLBA_Dali 0.021736 20.745764
  185. details: CHG Kazakhstan_MLBA_Dali 0.001002 0.884566
  186. dscore: Kazakhstan_MLBA_Dali f4: -0.001130 Z: -1.739143
  187.  
  188. gendstat: Mbuti.DG Russia_Shamanka_Eneolithic.SG -3.864
  189. gendstat: Mbuti.DG WSHG -2.433
  190. gendstat: Mbuti.DG PPN -5.734
  191. gendstat: Mbuti.DG Serbia_IronGates_Mesolithic -1.818
  192. gendstat: Mbuti.DG Iran_GanjDareh_N -0.908
  193. gendstat: Mbuti.DG Turkey_N -4.713
  194. gendstat: Mbuti.DG ONG.SG -2.342
  195. gendstat: Mbuti.DG Tarim_EMBA1 -3.904
  196. gendstat: Mbuti.DG Uzbekistan_Dzharkutan_BA_1 -4.015
  197. gendstat: Mbuti.DG Kazakhstan_MLBA_Dali -1.739
  198. gendstat: Russia_Shamanka_Eneolithic.SG WSHG 0.622
  199. gendstat: Russia_Shamanka_Eneolithic.SG PPN -2.674
  200. gendstat: Russia_Shamanka_Eneolithic.SG Serbia_IronGates_Mesolithic 1.918
  201. gendstat: Russia_Shamanka_Eneolithic.SG Iran_GanjDareh_N 2.698
  202. gendstat: Russia_Shamanka_Eneolithic.SG Turkey_N -0.817
  203. gendstat: Russia_Shamanka_Eneolithic.SG ONG.SG 1.410
  204. gendstat: Russia_Shamanka_Eneolithic.SG Tarim_EMBA1 -0.839
  205. gendstat: Russia_Shamanka_Eneolithic.SG Uzbekistan_Dzharkutan_BA_1 -0.061
  206. gendstat: Russia_Shamanka_Eneolithic.SG Kazakhstan_MLBA_Dali 1.535
  207. gendstat: WSHG PPN -2.786
  208. gendstat: WSHG Serbia_IronGates_Mesolithic 1.100
  209. gendstat: WSHG Iran_GanjDareh_N 1.725
  210. gendstat: WSHG Turkey_N -1.303
  211. gendstat: WSHG ONG.SG 0.464
  212. gendstat: WSHG Tarim_EMBA1 -1.491
  213. gendstat: WSHG Uzbekistan_Dzharkutan_BA_1 -0.701
  214. gendstat: WSHG Kazakhstan_MLBA_Dali 0.834
  215. gendstat: PPN Serbia_IronGates_Mesolithic 4.515
  216. gendstat: PPN Iran_GanjDareh_N 5.166
  217. gendstat: PPN Turkey_N 2.639
  218. gendstat: PPN ONG.SG 3.461
  219. gendstat: PPN Tarim_EMBA1 1.773
  220. gendstat: PPN Uzbekistan_Dzharkutan_BA_1 2.976
  221. gendstat: PPN Kazakhstan_MLBA_Dali 3.922
  222. gendstat: Serbia_IronGates_Mesolithic Iran_GanjDareh_N 1.016
  223. gendstat: Serbia_IronGates_Mesolithic Turkey_N -3.694
  224. gendstat: Serbia_IronGates_Mesolithic ONG.SG -0.527
  225. gendstat: Serbia_IronGates_Mesolithic Tarim_EMBA1 -2.578
  226. gendstat: Serbia_IronGates_Mesolithic Uzbekistan_Dzharkutan_BA_1 -2.244
  227. gendstat: Serbia_IronGates_Mesolithic Kazakhstan_MLBA_Dali -0.210
  228. gendstat: Iran_GanjDareh_N Turkey_N -4.092
  229. gendstat: Iran_GanjDareh_N ONG.SG -1.372
  230. gendstat: Iran_GanjDareh_N Tarim_EMBA1 -3.290
  231. gendstat: Iran_GanjDareh_N Uzbekistan_Dzharkutan_BA_1 -3.645
  232. gendstat: Iran_GanjDareh_N Kazakhstan_MLBA_Dali -1.065
  233. gendstat: Turkey_N ONG.SG 1.887
  234. gendstat: Turkey_N Tarim_EMBA1 -0.068
  235. gendstat: Turkey_N Uzbekistan_Dzharkutan_BA_1 0.944
  236. gendstat: Turkey_N Kazakhstan_MLBA_Dali 2.495
  237. gendstat: ONG.SG Tarim_EMBA1 -1.879
  238. gendstat: ONG.SG Uzbekistan_Dzharkutan_BA_1 -1.284
  239. gendstat: ONG.SG Kazakhstan_MLBA_Dali 0.320
  240. gendstat: Tarim_EMBA1 Uzbekistan_Dzharkutan_BA_1 0.787
  241. gendstat: Tarim_EMBA1 Kazakhstan_MLBA_Dali 2.224
  242. gendstat: Uzbekistan_Dzharkutan_BA_1 Kazakhstan_MLBA_Dali 1.762
  243.  
  244. removing /tmp/fsx.17098
  245. ##end of qpAdm: 15.711 seconds cpu 0.561 Mbytes in use
  246.  
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