API tools faq
paste
misnomer001

yamnaya ehg + chg+ sarazm + gac pass

misnomer001
Aug 2nd, 2022
357
0
Never
Add comment
Not a member of Pastebin yet? Sign Up, it unlocks many cool features!
text 13.85 KB | None | 0 0
raw download clone embed print report
  1. qpAdm: parameter file: parqpadm
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. popleft: left
  5. popright: right
  6. details: YES
  7. allsnps: YES
  8. inbreed: NO
  9. oldallsnps: NO
  10. S1: newpush
  11. S1X: newpush
  12. indivname: newpush.ind
  13. snpname: newpush.snp
  14. genotypename: newpush.geno
  15. ## qpAdm version: 1520
  16. seed: 1181387916
  17. inbreed set NO
  18. inbreed set NO
  19. tmp: /tmp/fsx.16076
  20.  
  21. left pops:
  22. Russia_Samara_EBA_Yamnaya
  23. EHG_Samara
  24. CHG_Kotias
  25. Poland_Globular_Amphora
  26. Tajikistan_C_Sarazm
  27.  
  28. right pops:
  29. Mbuti.DG
  30. Serbia_IronGates_Mesolithic
  31. CHG_Satsurblia
  32. Iran_GanjDareh_N
  33. Sunghir
  34. China_YR_MN
  35. Turkey_N
  36. Russia_Yana_UP.SG
  37. Russia_Shamanka_Eneolithic.SG
  38. ONG.SG
  39. WSHG
  40. Tarim_EMBA1
  41.  
  42. codimension 1
  43. f4info:
  44. f4rank: 3 dof: 8 chisq: 12.030 tail: 0.149860092 dofdiff: 10 chisqdiff: -12.030 taildiff: 1
  45. B:
  46. scale 1.000 1.000 1.000
  47. Serbia_IronGates_Mesolithic 1.300 -1.636 1.875
  48. CHG_Satsurblia -0.841 1.436 2.168
  49. Iran_GanjDareh_N -0.387 0.939 -1.215
  50. Sunghir 0.445 -0.393 0.627
  51. China_YR_MN 0.359 0.198 -0.163
  52. Turkey_N -0.226 -1.806 0.612
  53. Russia_Yana_UP.SG 0.575 -0.100 0.548
  54. Russia_Shamanka_Eneolithic.SG 0.557 0.354 0.067
  55. ONG.SG 0.343 0.209 -0.127
  56. WSHG 1.916 0.628 0.188
  57. Tarim_EMBA1 1.909 1.162 -0.395
  58. A:
  59. scale 89.127 156.726 305.577
  60. EHG_Samara 1.042 0.004 0.222
  61. CHG_Kotias -1.404 0.871 1.300
  62. Poland_Globular_Amphora -0.736 -1.747 -0.136
  63. Tajikistan_C_Sarazm -0.634 0.433 -1.497
  64.  
  65.  
  66. full rank
  67. f4info:
  68. f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 8 chisqdiff: 12.030 taildiff: 0.149860092
  69. B:
  70. scale 90.068 59.242 69.319 94.031
  71. Serbia_IronGates_Mesolithic 1.306 -1.352 0.388 -2.295
  72. CHG_Satsurblia -0.933 1.761 -0.772 -0.222
  73. Iran_GanjDareh_N -0.654 0.307 -0.528 0.916
  74. Sunghir 0.331 -0.470 -0.031 -0.838
  75. China_YR_MN 0.224 -0.379 -0.425 -0.258
  76. Turkey_N -0.368 -0.279 1.450 -0.714
  77. Russia_Yana_UP.SG 0.447 -0.496 -0.343 -0.806
  78. Russia_Shamanka_Eneolithic.SG 0.425 -0.454 -0.663 -0.452
  79. ONG.SG 0.103 -0.375 -0.439 -0.300
  80. WSHG 2.051 -1.560 -1.627 -1.288
  81. Tarim_EMBA1 1.762 -1.584 -2.072 -0.983
  82. A:
  83. scale 2.000 2.000 2.000 2.000
  84. EHG_Samara 2.000 0.000 0.000 0.000
  85. CHG_Kotias 0.000 2.000 0.000 0.000
  86. Poland_Globular_Amphora 0.000 0.000 2.000 0.000
  87. Tajikistan_C_Sarazm 0.000 0.000 0.000 2.000
  88.  
  89.  
  90. best coefficients: 0.469 0.178 0.142 0.211
  91. totmean: 0.469 0.178 0.142 0.211
  92. boot mean: 0.469 0.179 0.142 0.211
  93. std. errors: 0.014 0.027 0.014 0.029
  94.  
  95. error covariance (* 1,000,000)
  96. 199 87 -90 -196
  97. 87 713 -127 -673
  98. -90 -127 200 17
  99. -196 -673 17 853
  100.  
  101.  
  102. summ: Russia_Samara_EBA_Yamnaya 4 0.149860 0.469 0.179 0.142 0.211 199 87 -90 -196 713 ...
  103. -127 -673 200 17 853
  104.  
  105. fixed pat wt dof chisq tail prob
  106. 0000 0 8 12.030 0.14986 0.469 0.178 0.142 0.211
  107. 0001 1 9 54.313 1.64593e-08 0.526 0.354 0.120 0.000
  108. 0010 1 9 91.864 6.87578e-16 0.548 0.325 0.000 0.127
  109. 0100 1 9 58.950 2.13503e-09 0.446 0.000 0.169 0.384
  110. 1000 1 9 331.695 0 0.000 -1.766 0.561 2.205 infeasible
  111. 0011 2 10 102.525 1.70021e-17 0.570 0.430 0.000 0.000
  112. 0101 2 10 453.051 0 0.735 0.000 0.265 0.000
  113. 0110 2 10 176.881 0 0.529 0.000 0.000 0.471
  114. 1001 2 10 1207.351 0 0.000 1.100 -0.100 0.000 infeasible
  115. 1010 2 10 420.562 0 0.000 -3.881 0.000 4.881 infeasible
  116. 1100 2 10 800.727 0 0.000 0.000 0.300 0.700
  117. 0111 3 11 599.090 0 1.000 0.000 0.000 0.000
  118. 1011 3 11 1217.073 0 0.000 1.000 0.000 0.000
  119. 1101 3 11 2364.396 0 0.000 0.000 1.000 0.000
  120. 1110 3 11 1066.335 0 0.000 0.000 0.000 1.000
  121. best pat: 0000 0.14986 - -
  122. best pat: 0001 1.64593e-08 chi(nested): 42.283 p-value for nested model: 7.89794e-11
  123. best pat: 0011 1.70021e-17 chi(nested): 48.212 p-value for nested model: 3.82565e-12
  124. best pat: 0111 2.19285e-121 chi(nested): 496.565 p-value for nested model: 5.32367e-110
  125.  
  126. coeffs: 0.469 0.178 0.142 0.211
  127.  
  128. ## dscore:: f_4(Base, Fit, Rbase, right2)
  129. ## genstat:: f_4(Base, Fit, right1, right2)
  130.  
  131. details: EHG_Samara Serbia_IronGates_Mesolithic 0.014498 10.530287
  132. details: CHG_Kotias Serbia_IronGates_Mesolithic -0.022821 -16.950740
  133. details: Poland_Globular_Amphora Serbia_IronGates_Mesolithic 0.005593 5.321937
  134. details: Tajikistan_C_Sarazm Serbia_IronGates_Mesolithic -0.024402 -22.742366
  135. dscore: Serbia_IronGates_Mesolithic f4: -0.001627 Z: -1.922808
  136.  
  137. details: EHG_Samara CHG_Satsurblia -0.010359 -5.704558
  138. details: CHG_Kotias CHG_Satsurblia 0.029720 14.013607
  139. details: Poland_Globular_Amphora CHG_Satsurblia -0.011133 -7.802952
  140. details: Tajikistan_C_Sarazm CHG_Satsurblia -0.002357 -1.520805
  141. dscore: CHG_Satsurblia f4: -0.001640 Z: -1.441437
  142.  
  143. details: EHG_Samara Iran_GanjDareh_N -0.007259 -5.439389
  144. details: CHG_Kotias Iran_GanjDareh_N 0.005181 4.188926
  145. details: Poland_Globular_Amphora Iran_GanjDareh_N -0.007615 -7.983161
  146. details: Tajikistan_C_Sarazm Iran_GanjDareh_N 0.009742 8.889461
  147. dscore: Iran_GanjDareh_N f4: -0.001504 Z: -1.902313
  148.  
  149. details: EHG_Samara Sunghir 0.003674 2.585099
  150. details: CHG_Kotias Sunghir -0.007940 -5.857702
  151. details: Poland_Globular_Amphora Sunghir -0.000450 -0.432331
  152. details: Tajikistan_C_Sarazm Sunghir -0.008913 -7.271674
  153. dscore: Sunghir f4: -0.001638 Z: -1.854619
  154.  
  155. details: EHG_Samara China_YR_MN 0.002488 1.710580
  156. details: CHG_Kotias China_YR_MN -0.006393 -4.608586
  157. details: Poland_Globular_Amphora China_YR_MN -0.006132 -5.922750
  158. details: Tajikistan_C_Sarazm China_YR_MN -0.002747 -2.248161
  159. dscore: China_YR_MN f4: -0.001424 Z: -1.632595
  160.  
  161. details: EHG_Samara Turkey_N -0.004089 -3.384363
  162. details: CHG_Kotias Turkey_N -0.004703 -4.049959
  163. details: Poland_Globular_Amphora Turkey_N 0.020914 22.189122
  164. details: Tajikistan_C_Sarazm Turkey_N -0.007598 -8.395791
  165. dscore: Turkey_N f4: -0.001387 Z: -1.953059
  166.  
  167. details: EHG_Samara Russia_Yana_UP.SG 0.004960 3.357697
  168. details: CHG_Kotias Russia_Yana_UP.SG -0.008378 -5.959421
  169. details: Poland_Globular_Amphora Russia_Yana_UP.SG -0.004947 -4.378071
  170. details: Tajikistan_C_Sarazm Russia_Yana_UP.SG -0.008567 -6.867865
  171. dscore: Russia_Yana_UP.SG f4: -0.001679 Z: -1.901045
  172.  
  173. details: EHG_Samara Russia_Shamanka_Eneolithic.SG 0.004714 3.630423
  174. details: CHG_Kotias Russia_Shamanka_Eneolithic.SG -0.007666 -6.089741
  175. details: Poland_Globular_Amphora Russia_Shamanka_Eneolithic.SG -0.009565 -10.133333
  176. details: Tajikistan_C_Sarazm Russia_Shamanka_Eneolithic.SG -0.004802 -4.401935
  177. dscore: Russia_Shamanka_Eneolithic.SG f4: -0.001529 Z: -1.965515
  178.  
  179. details: EHG_Samara ONG.SG 0.001148 0.793773
  180. details: CHG_Kotias ONG.SG -0.006328 -4.606874
  181. details: Poland_Globular_Amphora ONG.SG -0.006337 -6.378159
  182. details: Tajikistan_C_Sarazm ONG.SG -0.003194 -2.626899
  183. dscore: ONG.SG f4: -0.002164 Z: -2.370647
  184.  
  185. details: EHG_Samara WSHG 0.022774 13.155466
  186. details: CHG_Kotias WSHG -0.026336 -17.247456
  187. details: Poland_Globular_Amphora WSHG -0.023475 -19.156423
  188. details: Tajikistan_C_Sarazm WSHG -0.013694 -9.867742
  189. dscore: WSHG f4: -0.000243 Z: -0.233413
  190.  
  191. details: EHG_Samara Tarim_EMBA1 0.019560 11.344215
  192. details: CHG_Kotias Tarim_EMBA1 -0.026735 -17.177058
  193. details: Poland_Globular_Amphora Tarim_EMBA1 -0.029893 -25.425205
  194. details: Tajikistan_C_Sarazm Tarim_EMBA1 -0.010454 -7.323453
  195. dscore: Tarim_EMBA1 f4: -0.002048 Z: -1.979135
  196.  
  197. gendstat: Mbuti.DG Serbia_IronGates_Mesolithic -1.923
  198. gendstat: Mbuti.DG CHG_Satsurblia -1.441
  199. gendstat: Mbuti.DG Iran_GanjDareh_N -1.902
  200. gendstat: Mbuti.DG Sunghir -1.855
  201. gendstat: Mbuti.DG China_YR_MN -1.633
  202. gendstat: Mbuti.DG Turkey_N -1.953
  203. gendstat: Mbuti.DG Russia_Yana_UP.SG -1.901
  204. gendstat: Mbuti.DG Russia_Shamanka_Eneolithic.SG -1.966
  205. gendstat: Mbuti.DG ONG.SG -2.371
  206. gendstat: Mbuti.DG WSHG -0.233
  207. gendstat: Mbuti.DG Tarim_EMBA1 -1.979
  208. gendstat: Serbia_IronGates_Mesolithic CHG_Satsurblia -0.012
  209. gendstat: Serbia_IronGates_Mesolithic Iran_GanjDareh_N 0.149
  210. gendstat: Serbia_IronGates_Mesolithic Sunghir -0.015
  211. gendstat: Serbia_IronGates_Mesolithic China_YR_MN 0.221
  212. gendstat: Serbia_IronGates_Mesolithic Turkey_N 0.376
  213. gendstat: Serbia_IronGates_Mesolithic Russia_Yana_UP.SG -0.065
  214. gendstat: Serbia_IronGates_Mesolithic Russia_Shamanka_Eneolithic.SG 0.123
  215. gendstat: Serbia_IronGates_Mesolithic ONG.SG -0.606
  216. gendstat: Serbia_IronGates_Mesolithic WSHG 1.439
  217. gendstat: Serbia_IronGates_Mesolithic Tarim_EMBA1 -0.433
  218. gendstat: CHG_Satsurblia Iran_GanjDareh_N 0.130
  219. gendstat: CHG_Satsurblia Sunghir 0.002
  220. gendstat: CHG_Satsurblia China_YR_MN 0.184
  221. gendstat: CHG_Satsurblia Turkey_N 0.249
  222. gendstat: CHG_Satsurblia Russia_Yana_UP.SG -0.034
  223. gendstat: CHG_Satsurblia Russia_Shamanka_Eneolithic.SG 0.102
  224. gendstat: CHG_Satsurblia ONG.SG -0.450
  225. gendstat: CHG_Satsurblia WSHG 1.093
  226. gendstat: CHG_Satsurblia Tarim_EMBA1 -0.326
  227. gendstat: Iran_GanjDareh_N Sunghir -0.158
  228. gendstat: Iran_GanjDareh_N China_YR_MN 0.092
  229. gendstat: Iran_GanjDareh_N Turkey_N 0.171
  230. gendstat: Iran_GanjDareh_N Russia_Yana_UP.SG -0.193
  231. gendstat: Iran_GanjDareh_N Russia_Shamanka_Eneolithic.SG -0.031
  232. gendstat: Iran_GanjDareh_N ONG.SG -0.750
  233. gendstat: Iran_GanjDareh_N WSHG 1.280
  234. gendstat: Iran_GanjDareh_N Tarim_EMBA1 -0.565
  235. gendstat: Sunghir China_YR_MN 0.241
  236. gendstat: Sunghir Turkey_N 0.330
  237. gendstat: Sunghir Russia_Yana_UP.SG -0.049
  238. gendstat: Sunghir Russia_Shamanka_Eneolithic.SG 0.137
  239. gendstat: Sunghir ONG.SG -0.609
  240. gendstat: Sunghir WSHG 1.420
  241. gendstat: Sunghir Tarim_EMBA1 -0.432
  242. gendstat: China_YR_MN Turkey_N 0.044
  243. gendstat: China_YR_MN Russia_Yana_UP.SG -0.283
  244. gendstat: China_YR_MN Russia_Shamanka_Eneolithic.SG -0.190
  245. gendstat: China_YR_MN ONG.SG -0.919
  246. gendstat: China_YR_MN WSHG 1.156
  247. gendstat: China_YR_MN Tarim_EMBA1 -0.656
  248. gendstat: Turkey_N Russia_Yana_UP.SG -0.362
  249. gendstat: Turkey_N Russia_Shamanka_Eneolithic.SG -0.197
  250. gendstat: Turkey_N ONG.SG -0.933
  251. gendstat: Turkey_N WSHG 1.178
  252. gendstat: Turkey_N Tarim_EMBA1 -0.700
  253. gendstat: Russia_Yana_UP.SG Russia_Shamanka_Eneolithic.SG 0.182
  254. gendstat: Russia_Yana_UP.SG ONG.SG -0.532
  255. gendstat: Russia_Yana_UP.SG WSHG 1.417
  256. gendstat: Russia_Yana_UP.SG Tarim_EMBA1 -0.382
  257. gendstat: Russia_Shamanka_Eneolithic.SG ONG.SG -0.881
  258. gendstat: Russia_Shamanka_Eneolithic.SG WSHG 1.417
  259. gendstat: Russia_Shamanka_Eneolithic.SG Tarim_EMBA1 -0.613
  260. gendstat: ONG.SG WSHG 1.794
  261. gendstat: ONG.SG Tarim_EMBA1 0.117
  262. gendstat: WSHG Tarim_EMBA1 -2.196
  263.  
  264. removing /tmp/fsx.16076
  265. ##end of qpAdm: 27.698 seconds cpu 0.582 Mbytes in use
  266.  
Advertisement
Add Comment
Please, Sign In to add comment
Public Pastes
We use cookies for various purposes including analytics. By continuing to use Pastebin, you agree to our use of cookies as described in the Cookies Policy.  OK, I Understand
Not a member of Pastebin yet?
Sign Up, it unlocks many cool features!