API tools faq
paste
misnomer001

ukr_n_admixed

misnomer001
May 21st, 2020
95
0
Never
Add comment
Not a member of Pastebin yet? Sign Up, it unlocks many cool features!
text 15.09 KB | None | 0 0
raw download clone embed print report
  1. allsnps: YES
  2. ## qpAdm version: 1000
  3. seed: 1831068010
  4. read 1073741824 bytes
  5. read 2146675633 bytes
  6. packed geno read OK
  7. end of inpack
  8.  
  9. left pops:
  10. Ukraine_N_adm
  11. Ukraine_Mesolithic
  12. Serbia_Mesolithic_IronGates
  13. Russia_Steppe_Eneolithic
  14.  
  15. right pops:
  16. Cameroon_SMA.DG
  17. Morocco_Iberomaurusian
  18. Russia_Ust_Ishim.DG
  19. Russia_Kostenki14.SG
  20. Russia_MA1_HG.SG
  21. Boisman_MN
  22. ONG.SG
  23. Italy_North_Villabruna_HG
  24. Czech_Vestonice16
  25. Iberia_ElMiron
  26. Israel_Natufian
  27. Georgia_Satsurblia.SG
  28. Iran_GanjDareh_N
  29. Anatolia_Epipaleolithic
  30.  
  31. 0 Ukraine_N_adm 5
  32. 1 Ukraine_Mesolithic 5
  33. 2 Serbia_Mesolithic_IronGates 29
  34. 3 Russia_Steppe_Eneolithic 3
  35. 4 Cameroon_SMA.DG 1
  36. 5 Morocco_Iberomaurusian 6
  37. 6 Russia_Ust_Ishim.DG 1
  38. 7 Russia_Kostenki14.SG 1
  39. 8 Russia_MA1_HG.SG 1
  40. 9 Boisman_MN 12
  41. 10 ONG.SG 6
  42. 11 Italy_North_Villabruna_HG 1
  43. 12 Czech_Vestonice16 1
  44. 13 Iberia_ElMiron 1
  45. 14 Israel_Natufian 6
  46. 15 Georgia_Satsurblia.SG 1
  47. 16 Iran_GanjDareh_N 8
  48. 17 Anatolia_Epipaleolithic 1
  49. jackknife block size: 0.050
  50. snps: 1150511 indivs: 89
  51. number of blocks for block jackknife: 713
  52. ## ncols: 1150511
  53. coverage: Ukraine_N_adm 919905
  54. coverage: Ukraine_Mesolithic 946723
  55. coverage: Serbia_Mesolithic_IronGates 1137488
  56. coverage: Russia_Steppe_Eneolithic 1008226
  57. coverage: Cameroon_SMA.DG 1140138
  58. coverage: Morocco_Iberomaurusian 1101342
  59. coverage: Russia_Ust_Ishim.DG 1062044
  60. coverage: Russia_Kostenki14.SG 1048972
  61. coverage: Russia_MA1_HG.SG 805960
  62. coverage: Boisman_MN 1031750
  63. coverage: ONG.SG 1143397
  64. coverage: Italy_North_Villabruna_HG 883779
  65. coverage: Czech_Vestonice16 732091
  66. coverage: Iberia_ElMiron 626974
  67. coverage: Israel_Natufian 535079
  68. coverage: Georgia_Satsurblia.SG 801311
  69. coverage: Iran_GanjDareh_N 1057358
  70. coverage: Anatolia_Epipaleolithic 848431
  71. dof (jackknife): 620.111
  72. numsnps used: 1150511
  73. codimension 1
  74. f4info:
  75. f4rank: 2 dof: 11 chisq: 14.227 tail: 0.22070898 dofdiff: 13 chisqdiff: -14.227 taildiff: 1
  76. B:
  77. scale 1.000 1.000
  78. Morocco_Iberomaurusian 0.301 0.514
  79. Russia_Ust_Ishim.DG 0.111 0.329
  80. Russia_Kostenki14.SG 0.433 0.509
  81. Russia_MA1_HG.SG -0.365 2.759
  82. Boisman_MN -0.071 1.305
  83. ONG.SG -0.013 0.382
  84. Italy_North_Villabruna_HG 2.948 -0.649
  85. Czech_Vestonice16 0.848 0.740
  86. Iberia_ElMiron 1.426 -0.219
  87. Israel_Natufian 0.279 0.269
  88. Georgia_Satsurblia.SG -0.569 -1.192
  89. Iran_GanjDareh_N -0.636 -0.625
  90. Anatolia_Epipaleolithic 0.567 0.082
  91. A:
  92. scale 441.428 2085.804
  93. Ukraine_Mesolithic -0.160 0.647
  94. Serbia_Mesolithic_IronGates 0.952 -1.059
  95. Russia_Steppe_Eneolithic -1.438 -1.209
  96.  
  97.  
  98. full rank
  99. f4info:
  100. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 11 chisqdiff: 14.227 taildiff: 0.22070898
  101. B:
  102. scale 1731.537 451.936 295.489
  103. Morocco_Iberomaurusian 0.011 0.160 -0.409
  104. Russia_Ust_Ishim.DG 0.044 0.021 -0.204
  105. Russia_Kostenki14.SG 0.501 0.361 -0.492
  106. Russia_MA1_HG.SG 1.903 -0.996 -0.122
  107. Boisman_MN 0.140 -0.483 -0.275
  108. ONG.SG 0.231 -0.118 -0.095
  109. Italy_North_Villabruna_HG -2.475 2.958 -2.815
  110. Czech_Vestonice16 -0.810 0.541 -1.061
  111. Iberia_ElMiron -1.067 1.412 -1.357
  112. Israel_Natufian -0.570 0.093 -0.408
  113. Georgia_Satsurblia.SG -0.205 -0.269 0.740
  114. Iran_GanjDareh_N -0.375 -0.561 0.631
  115. Anatolia_Epipaleolithic -0.790 0.420 -0.668
  116. A:
  117. scale 1.732 1.732 1.732
  118. Ukraine_Mesolithic 1.732 0.000 0.000
  119. Serbia_Mesolithic_IronGates 0.000 1.732 0.000
  120. Russia_Steppe_Eneolithic 0.000 0.000 1.732
  121.  
  122.  
  123. best coefficients: 0.630 0.265 0.105
  124. Jackknife mean: 0.626989482 0.266341548 0.106668970
  125. std. errors: 0.064 0.035 0.035
  126.  
  127. error covariance (* 1,000,000)
  128. 4153 -2073 -2080
  129. -2073 1206 867
  130. -2080 867 1214
  131.  
  132.  
  133. summ: Ukraine_N_adm 3 0.220709 0.627 0.266 0.107 4153 -2073 -2080 1206 867 ...
  134. 1214
  135.  
  136. fixed pat wt dof chisq tail prob
  137. 000 0 11 14.227 0.220709 0.630 0.265 0.105
  138. 001 1 12 22.401 0.0332615 0.817 0.183 0.000
  139. 010 1 12 47.968 3.16481e-06 1.096 0.000 -0.096 infeasible
  140. 100 1 12 118.195 1.41457e-19 0.000 0.576 0.424
  141. 011 2 13 57.494 1.46785e-07 1.000 0.000 0.000
  142. 101 2 13 1084.207 0 0.000 1.000 0.000
  143. 110 2 13 1158.506 0 0.000 0.000 1.000
  144. best pat: 000 0.220709 - -
  145. best pat: 100 1.41457e-19 chi(nested): 103.968 p-value for nested model: 2.05565e-24
  146. best pat: 011 1.46785e-07 not nested
  147.  
  148. coeffs: 0.630 0.265 0.105
  149.  
  150. ## dscore:: f_4(Base, Fit, Rbase, right2)
  151. ## genstat:: f_4(Base, Fit, right1, right2)
  152.  
  153. details: Ukraine_Mesolithic Morocco_Iberomaurusian 0.000006 0.028228
  154. details: Serbia_Mesolithic_IronGates Morocco_Iberomaurusian 0.000353 1.827565
  155. details: Russia_Steppe_Eneolithic Morocco_Iberomaurusian -0.001383 -4.995175
  156. dscore: Morocco_Iberomaurusian f4: -0.000048 Z: -0.250589
  157.  
  158. details: Ukraine_Mesolithic Russia_Ust_Ishim.DG 0.000025 0.096641
  159. details: Serbia_Mesolithic_IronGates Russia_Ust_Ishim.DG 0.000047 0.207706
  160. details: Russia_Steppe_Eneolithic Russia_Ust_Ishim.DG -0.000689 -2.154654
  161. dscore: Russia_Ust_Ishim.DG f4: -0.000044 Z: -0.200888
  162.  
  163. details: Ukraine_Mesolithic Russia_Kostenki14.SG 0.000290 0.984066
  164. details: Serbia_Mesolithic_IronGates Russia_Kostenki14.SG 0.000798 3.164630
  165. details: Russia_Steppe_Eneolithic Russia_Kostenki14.SG -0.001667 -4.866374
  166. dscore: Russia_Kostenki14.SG f4: 0.000218 Z: 0.899891
  167.  
  168. details: Ukraine_Mesolithic Russia_MA1_HG.SG 0.001099 3.840660
  169. details: Serbia_Mesolithic_IronGates Russia_MA1_HG.SG -0.002204 -8.706314
  170. details: Russia_Steppe_Eneolithic Russia_MA1_HG.SG -0.000413 -1.246559
  171. dscore: Russia_MA1_HG.SG f4: 0.000066 Z: 0.273365
  172.  
  173. details: Ukraine_Mesolithic Boisman_MN 0.000081 0.319998
  174. details: Serbia_Mesolithic_IronGates Boisman_MN -0.001068 -5.245176
  175. details: Russia_Steppe_Eneolithic Boisman_MN -0.000930 -3.130727
  176. dscore: Boisman_MN f4: -0.000330 Z: -1.578196
  177.  
  178. details: Ukraine_Mesolithic ONG.SG 0.000134 0.544945
  179. details: Serbia_Mesolithic_IronGates ONG.SG -0.000260 -1.289877
  180. details: Russia_Steppe_Eneolithic ONG.SG -0.000323 -1.092982
  181. dscore: ONG.SG f4: -0.000019 Z: -0.091511
  182.  
  183. details: Ukraine_Mesolithic Italy_North_Villabruna_HG -0.001429 -4.139135
  184. details: Serbia_Mesolithic_IronGates Italy_North_Villabruna_HG 0.006544 22.243805
  185. details: Russia_Steppe_Eneolithic Italy_North_Villabruna_HG -0.009527 -23.924992
  186. dscore: Italy_North_Villabruna_HG f4: -0.000171 Z: -0.595164
  187.  
  188. details: Ukraine_Mesolithic Czech_Vestonice16 -0.000468 -1.587886
  189. details: Serbia_Mesolithic_IronGates Czech_Vestonice16 0.001197 4.767712
  190. details: Russia_Steppe_Eneolithic Czech_Vestonice16 -0.003590 -10.556923
  191. dscore: Czech_Vestonice16 f4: -0.000356 Z: -1.448551
  192.  
  193. details: Ukraine_Mesolithic Iberia_ElMiron -0.000616 -2.179166
  194. details: Serbia_Mesolithic_IronGates Iberia_ElMiron 0.003123 11.706534
  195. details: Russia_Steppe_Eneolithic Iberia_ElMiron -0.004591 -13.586131
  196. dscore: Iberia_ElMiron f4: -0.000045 Z: -0.186769
  197.  
  198. details: Ukraine_Mesolithic Israel_Natufian -0.000329 -1.395638
  199. details: Serbia_Mesolithic_IronGates Israel_Natufian 0.000207 0.960694
  200. details: Russia_Steppe_Eneolithic Israel_Natufian -0.001382 -5.293858
  201. dscore: Israel_Natufian f4: -0.000298 Z: -1.487974
  202.  
  203. details: Ukraine_Mesolithic Georgia_Satsurblia.SG -0.000119 -0.451633
  204. details: Serbia_Mesolithic_IronGates Georgia_Satsurblia.SG -0.000596 -2.551353
  205. details: Russia_Steppe_Eneolithic Georgia_Satsurblia.SG 0.002504 8.112373
  206. dscore: Georgia_Satsurblia.SG f4: 0.000031 Z: 0.140521
  207.  
  208. details: Ukraine_Mesolithic Iran_GanjDareh_N -0.000217 -0.913232
  209. details: Serbia_Mesolithic_IronGates Iran_GanjDareh_N -0.001242 -6.510067
  210. details: Russia_Steppe_Eneolithic Iran_GanjDareh_N 0.002136 7.949570
  211. dscore: Iran_GanjDareh_N f4: -0.000240 Z: -1.240761
  212.  
  213. details: Ukraine_Mesolithic Anatolia_Epipaleolithic -0.000456 -1.588221
  214. details: Serbia_Mesolithic_IronGates Anatolia_Epipaleolithic 0.000929 3.492074
  215. details: Russia_Steppe_Eneolithic Anatolia_Epipaleolithic -0.002260 -6.455934
  216. dscore: Anatolia_Epipaleolithic f4: -0.000279 Z: -1.132565
  217.  
  218. gendstat: Cameroon_SMA.DG Morocco_Iberomaurusian -0.251
  219. gendstat: Cameroon_SMA.DG Russia_Ust_Ishim.DG -0.201
  220. gendstat: Cameroon_SMA.DG Russia_Kostenki14.SG 0.900
  221. gendstat: Cameroon_SMA.DG Russia_MA1_HG.SG 0.273
  222. gendstat: Cameroon_SMA.DG Boisman_MN -1.578
  223. gendstat: Cameroon_SMA.DG ONG.SG -0.092
  224. gendstat: Cameroon_SMA.DG Italy_North_Villabruna_HG -0.595
  225. gendstat: Cameroon_SMA.DG Czech_Vestonice16 -1.449
  226. gendstat: Cameroon_SMA.DG Iberia_ElMiron -0.187
  227. gendstat: Cameroon_SMA.DG Israel_Natufian -1.488
  228. gendstat: Cameroon_SMA.DG Georgia_Satsurblia.SG 0.141
  229. gendstat: Cameroon_SMA.DG Iran_GanjDareh_N -1.241
  230. gendstat: Cameroon_SMA.DG Anatolia_Epipaleolithic -1.133
  231. gendstat: Morocco_Iberomaurusian Russia_Ust_Ishim.DG 0.017
  232. gendstat: Morocco_Iberomaurusian Russia_Kostenki14.SG 1.071
  233. gendstat: Morocco_Iberomaurusian Russia_MA1_HG.SG 0.446
  234. gendstat: Morocco_Iberomaurusian Boisman_MN -1.343
  235. gendstat: Morocco_Iberomaurusian ONG.SG 0.142
  236. gendstat: Morocco_Iberomaurusian Italy_North_Villabruna_HG -0.439
  237. gendstat: Morocco_Iberomaurusian Czech_Vestonice16 -1.261
  238. gendstat: Morocco_Iberomaurusian Iberia_ElMiron 0.013
  239. gendstat: Morocco_Iberomaurusian Israel_Natufian -1.197
  240. gendstat: Morocco_Iberomaurusian Georgia_Satsurblia.SG 0.332
  241. gendstat: Morocco_Iberomaurusian Iran_GanjDareh_N -0.988
  242. gendstat: Morocco_Iberomaurusian Anatolia_Epipaleolithic -0.949
  243. gendstat: Russia_Ust_Ishim.DG Russia_Kostenki14.SG 1.031
  244. gendstat: Russia_Ust_Ishim.DG Russia_MA1_HG.SG 0.408
  245. gendstat: Russia_Ust_Ishim.DG Boisman_MN -1.281
  246. gendstat: Russia_Ust_Ishim.DG ONG.SG 0.122
  247. gendstat: Russia_Ust_Ishim.DG Italy_North_Villabruna_HG -0.443
  248. gendstat: Russia_Ust_Ishim.DG Czech_Vestonice16 -1.164
  249. gendstat: Russia_Ust_Ishim.DG Iberia_ElMiron -0.003
  250. gendstat: Russia_Ust_Ishim.DG Israel_Natufian -1.012
  251. gendstat: Russia_Ust_Ishim.DG Georgia_Satsurblia.SG 0.297
  252. gendstat: Russia_Ust_Ishim.DG Iran_GanjDareh_N -0.897
  253. gendstat: Russia_Ust_Ishim.DG Anatolia_Epipaleolithic -0.875
  254. gendstat: Russia_Kostenki14.SG Russia_MA1_HG.SG -0.574
  255. gendstat: Russia_Kostenki14.SG Boisman_MN -2.358
  256. gendstat: Russia_Kostenki14.SG ONG.SG -1.010
  257. gendstat: Russia_Kostenki14.SG Italy_North_Villabruna_HG -1.276
  258. gendstat: Russia_Kostenki14.SG Czech_Vestonice16 -2.092
  259. gendstat: Russia_Kostenki14.SG Iberia_ElMiron -0.896
  260. gendstat: Russia_Kostenki14.SG Israel_Natufian -1.991
  261. gendstat: Russia_Kostenki14.SG Georgia_Satsurblia.SG -0.691
  262. gendstat: Russia_Kostenki14.SG Iran_GanjDareh_N -2.001
  263. gendstat: Russia_Kostenki14.SG Anatolia_Epipaleolithic -1.741
  264. gendstat: Russia_MA1_HG.SG Boisman_MN -1.655
  265. gendstat: Russia_MA1_HG.SG ONG.SG -0.350
  266. gendstat: Russia_MA1_HG.SG Italy_North_Villabruna_HG -0.781
  267. gendstat: Russia_MA1_HG.SG Czech_Vestonice16 -1.454
  268. gendstat: Russia_MA1_HG.SG Iberia_ElMiron -0.386
  269. gendstat: Russia_MA1_HG.SG Israel_Natufian -1.386
  270. gendstat: Russia_MA1_HG.SG Georgia_Satsurblia.SG -0.130
  271. gendstat: Russia_MA1_HG.SG Iran_GanjDareh_N -1.311
  272. gendstat: Russia_MA1_HG.SG Anatolia_Epipaleolithic -1.259
  273. gendstat: Boisman_MN ONG.SG 1.795
  274. gendstat: Boisman_MN Italy_North_Villabruna_HG 0.566
  275. gendstat: Boisman_MN Czech_Vestonice16 -0.104
  276. gendstat: Boisman_MN Iberia_ElMiron 1.119
  277. gendstat: Boisman_MN Israel_Natufian 0.140
  278. gendstat: Boisman_MN Georgia_Satsurblia.SG 1.502
  279. gendstat: Boisman_MN Iran_GanjDareh_N 0.473
  280. gendstat: Boisman_MN Anatolia_Epipaleolithic 0.206
  281. gendstat: ONG.SG Italy_North_Villabruna_HG -0.552
  282. gendstat: ONG.SG Czech_Vestonice16 -1.392
  283. gendstat: ONG.SG Iberia_ElMiron -0.105
  284. gendstat: ONG.SG Israel_Natufian -1.253
  285. gendstat: ONG.SG Georgia_Satsurblia.SG 0.216
  286. gendstat: ONG.SG Iran_GanjDareh_N -1.193
  287. gendstat: ONG.SG Anatolia_Epipaleolithic -1.092
  288. gendstat: Italy_North_Villabruna_HG Czech_Vestonice16 -0.607
  289. gendstat: Italy_North_Villabruna_HG Iberia_ElMiron 0.436
  290. gendstat: Italy_North_Villabruna_HG Israel_Natufian -0.438
  291. gendstat: Italy_North_Villabruna_HG Georgia_Satsurblia.SG 0.653
  292. gendstat: Italy_North_Villabruna_HG Iran_GanjDareh_N -0.244
  293. gendstat: Italy_North_Villabruna_HG Anatolia_Epipaleolithic -0.367
  294. gendstat: Czech_Vestonice16 Iberia_ElMiron 1.133
  295. gendstat: Czech_Vestonice16 Israel_Natufian 0.222
  296. gendstat: Czech_Vestonice16 Georgia_Satsurblia.SG 1.386
  297. gendstat: Czech_Vestonice16 Iran_GanjDareh_N 0.480
  298. gendstat: Czech_Vestonice16 Anatolia_Epipaleolithic 0.285
  299. gendstat: Iberia_ElMiron Israel_Natufian -0.985
  300. gendstat: Iberia_ElMiron Georgia_Satsurblia.SG 0.263
  301. gendstat: Iberia_ElMiron Iran_GanjDareh_N -0.786
  302. gendstat: Iberia_ElMiron Anatolia_Epipaleolithic -0.846
  303. gendstat: Israel_Natufian Georgia_Satsurblia.SG 1.346
  304. gendstat: Israel_Natufian Iran_GanjDareh_N 0.267
  305. gendstat: Israel_Natufian Anatolia_Epipaleolithic 0.077
  306. gendstat: Georgia_Satsurblia.SG Iran_GanjDareh_N -1.292
  307. gendstat: Georgia_Satsurblia.SG Anatolia_Epipaleolithic -1.169
  308. gendstat: Iran_GanjDareh_N Anatolia_Epipaleolithic -0.164
  309.  
  310. ##end of qpAdm: 377.824 seconds cpu 1442.050 Mbytes in use
Add Comment
Please, Sign In to add comment
Public Pastes
We use cookies for various purposes including analytics. By continuing to use Pastebin, you agree to our use of cookies as described in the Cookies Policy.  OK, I Understand
Not a member of Pastebin yet?
Sign Up, it unlocks many cool features!