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mahmoodn

java-jsoup

mahmoodn
Nov 19th, 2017
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  1. mahmood@u1604:excel-cmd$ javac -cp /home/mahmood/excel-cmd/jsoup-1.10.3.jar -verbose *.java
  2. [parsing started RegularFileObject[ExcelFile.java]]
  3. [parsing completed 56ms]
  4. [parsing started RegularFileObject[GeneVariation.java]]
  5. [parsing completed 1ms]
  6. [parsing started RegularFileObject[MutationTaster.java]]
  7. [parsing completed 3ms]
  8. [parsing started RegularFileObject[OneRow.java]]
  9. [parsing completed 1ms]
  10. [parsing started RegularFileObject[TheFrame.java]]
  11. [parsing completed 15ms]
  12. [parsing started RegularFileObject[Variations.java]]
  13. [parsing completed 1ms]
  14. [search path for source files: /home/mahmood/excel-cmd/jsoup-1.10.3.jar]
  15. [search path for class files: /usr/lib/jvm/java-8-openjdk-amd64/jre/lib/resources.jar,/usr/lib/jvm/java-8-openjdk-amd64/jre/lib/rt.jar,/usr/lib/jvm/java-8-openjdk-amd64/jre/lib/sunrsasign.jar,/usr/lib/jvm/java-8-openjdk-amd64/jre/lib/jsse.jar,/usr/lib/jvm/java-8-openjdk-amd64/jre/lib/jce.jar,/usr/lib/jvm/java-8-openjdk-amd64/jre/lib/charsets.jar,/usr/lib/jvm/java-8-openjdk-amd64/jre/lib/jfr.jar,/usr/lib/jvm/java-8-openjdk-amd64/jre/classes,/usr/lib/jvm/java-8-openjdk-amd64/jre/lib/ext/jaccess.jar,/usr/lib/jvm/java-8-openjdk-amd64/jre/lib/ext/cldrdata.jar,/usr/lib/jvm/java-8-openjdk-amd64/jre/lib/ext/sunec.jar,/usr/lib/jvm/java-8-openjdk-amd64/jre/lib/ext/zipfs.jar,/usr/lib/jvm/java-8-openjdk-amd64/jre/lib/ext/sunpkcs11.jar,/usr/lib/jvm/java-8-openjdk-amd64/jre/lib/ext/nashorn.jar,/usr/lib/jvm/java-8-openjdk-amd64/jre/lib/ext/dnsns.jar,/usr/lib/jvm/java-8-openjdk-amd64/jre/lib/ext/localedata.jar,/usr/lib/jvm/java-8-openjdk-amd64/jre/lib/ext/icedtea-sound.jar,/usr/lib/jvm/java-8-openjdk-amd64/jre/lib/ext/sunjce_provider.jar,/home/mahmood/excel-cmd/jsoup-1.10.3.jar]
  16. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/javax/swing/JFileChooser.class)]]
  17. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/javax/swing/JList.class)]]
  18. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/util/List.class)]]
  19. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/util/ArrayList.class)]]
  20. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/javax/swing/JTextArea.class)]]
  21. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/util/regex/Matcher.class)]]
  22. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/util/regex/Pattern.class)]]
  23. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/util/HashSet.class)]]
  24. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/util/Iterator.class)]]
  25. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/util/Calendar.class)]]
  26. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/ProcessBuilder.class)]]
  27. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/ProcessBuilder$Redirect.class)]]
  28. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/Object.class)]]
  29. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/String.class)]]
  30. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/io/BufferedWriter.class)]]
  31. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/io/File.class)]]
  32. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/io/FileWriter.class)]]
  33. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/io/IOException.class)]]
  34. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/io/FileOutputStream.class)]]
  35. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/io/OutputStreamWriter.class)]]
  36. [loading ZipFileIndexFileObject[/home/mahmood/excel-cmd/jsoup-1.10.3.jar(org/jsoup/Jsoup.class)]]
  37. [loading ZipFileIndexFileObject[/home/mahmood/excel-cmd/jsoup-1.10.3.jar(org/jsoup/nodes/Document.class)]]
  38. [loading ZipFileIndexFileObject[/home/mahmood/excel-cmd/jsoup-1.10.3.jar(org/jsoup/nodes/Element.class)]]
  39. [loading ZipFileIndexFileObject[/home/mahmood/excel-cmd/jsoup-1.10.3.jar(org/jsoup/select/Elements.class)]]
  40. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/Exception.class)]]
  41. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/javax/swing/SwingWorker.class)]]
  42. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/beans/PropertyChangeListener.class)]]
  43. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/beans/PropertyChangeEvent.class)]]
  44. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/util/concurrent/ExecutionException.class)]]
  45. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/javax/swing/JDialog.class)]]
  46. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/javax/swing/JPanel.class)]]
  47. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/javax/swing/JOptionPane.class)]]
  48. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/javax/swing/JLabel.class)]]
  49. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/awt/BorderLayout.class)]]
  50. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/awt/Color.class)]]
  51. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/awt/Font.class)]]
  52. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/awt/Point.class)]]
  53. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/awt/Rectangle.class)]]
  54. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/javax/swing/filechooser/FileNameExtensionFilter.class)]]
  55. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/javax/swing/text/DefaultCaret.class)]]
  56. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/net/NetworkInterface.class)]]
  57. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/net/SocketException.class)]]
  58. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/util/Enumeration.class)]]
  59. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/javax/swing/BorderFactory.class)]]
  60. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/javax/swing/DefaultListModel.class)]]
  61. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/javax/swing/JFrame.class)]]
  62. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/javax/swing/WindowConstants.class)]]
  63. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/javax/accessibility/Accessible.class)]]
  64. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/javax/swing/RootPaneContainer.class)]]
  65. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/javax/swing/TransferHandler.class)]]
  66. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/javax/swing/TransferHandler$HasGetTransferHandler.class)]]
  67. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/io/Serializable.class)]]
  68. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/awt/Frame.class)]]
  69. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/awt/MenuContainer.class)]]
  70. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/awt/Window.class)]]
  71. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/awt/Container.class)]]
  72. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/awt/Component.class)]]
  73. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/awt/image/ImageObserver.class)]]
  74. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/awt/event/ActionEvent.class)]]
  75. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/awt/event/WindowEvent.class)]]
  76. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/javax/swing/JCheckBox.class)]]
  77. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/javax/swing/JButton.class)]]
  78. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/javax/swing/JTextField.class)]]
  79. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/javax/swing/JScrollPane.class)]]
  80. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/beans/ConstructorProperties.class)]]
  81. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/SuppressWarnings.class)]]
  82. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/annotation/Annotation.class)]]
  83. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/annotation/Target.class)]]
  84. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/annotation/ElementType.class)]]
  85. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/annotation/Retention.class)]]
  86. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/annotation/RetentionPolicy.class)]]
  87. [checking ExcelFile]
  88. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/AutoCloseable.class)]]
  89. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/util/Collection.class)]]
  90. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/util/AbstractList.class)]]
  91. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/util/AbstractCollection.class)]]
  92. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/Iterable.class)]]
  93. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/Comparable.class)]]
  94. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/CharSequence.class)]]
  95. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/net/URI.class)]]
  96. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/Byte.class)]]
  97. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/Character.class)]]
  98. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/Short.class)]]
  99. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/Long.class)]]
  100. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/Float.class)]]
  101. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/Integer.class)]]
  102. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/Double.class)]]
  103. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/Boolean.class)]]
  104. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/Void.class)]]
  105. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/Throwable.class)]]
  106. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/io/Writer.class)]]
  107. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/Appendable.class)]]
  108. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/io/Closeable.class)]]
  109. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/io/Flushable.class)]]
  110. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/System.class)]]
  111. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/Cloneable.class)]]
  112. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/util/Date.class)]]
  113. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/text/SimpleDateFormat.class)]]
  114. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/text/DateFormat.class)]]
  115. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/text/Format.class)]]
  116. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/javax/swing/text/JTextComponent.class)]]
  117. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/javax/swing/Scrollable.class)]]
  118. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/javax/swing/JComponent.class)]]
  119. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/Process.class)]]
  120. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/Runtime.class)]]
  121. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/InterruptedException.class)]]
  122. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/io/BufferedReader.class)]]
  123. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/io/FileReader.class)]]
  124. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/io/FileDescriptor.class)]]
  125. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/io/InputStreamReader.class)]]
  126. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/io/Reader.class)]]
  127. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/Readable.class)]]
  128. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/Error.class)]]
  129. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/RuntimeException.class)]]
  130. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/io/PrintStream.class)]]
  131. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/io/FilterOutputStream.class)]]
  132. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/io/OutputStream.class)]]
  133. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/util/Collections.class)]]
  134. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/util/Comparator.class)]]
  135. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/Number.class)]]
  136. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/util/Set.class)]]
  137. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/util/AbstractSet.class)]]
  138. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/javax/swing/ListModel.class)]]
  139. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/Thread.class)]]
  140. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/sun/misc/Contended.class)]]
  141. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/Runnable.class)]]
  142. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/util/regex/MatchResult.class)]]
  143. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/Math.class)]]
  144. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/StringBuffer.class)]]
  145. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/AbstractStringBuilder.class)]]
  146. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/StringBuilder.class)]]
  147. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/io/FileNotFoundException.class)]]
  148. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/NumberFormatException.class)]]
  149. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/IllegalArgumentException.class)]]
  150. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/invoke/LambdaMetafactory.class)]]
  151. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/invoke/MethodHandles.class)]]
  152. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/invoke/MethodHandles$Lookup.class)]]
  153. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/invoke/MethodType.class)]]
  154. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/invoke/MethodHandle.class)]]
  155. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/invoke/CallSite.class)]]
  156. [wrote RegularFileObject[ExcelFile.class]]
  157. [checking GeneVariation]
  158. [wrote RegularFileObject[GeneVariation.class]]
  159. [checking MutationTaster]
  160. [loading ZipFileIndexFileObject[/home/mahmood/excel-cmd/jsoup-1.10.3.jar(org/jsoup/Connection.class)]]
  161. [loading ZipFileIndexFileObject[/home/mahmood/excel-cmd/jsoup-1.10.3.jar(org/jsoup/nodes/Node.class)]]
  162. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/util/RandomAccess.class)]]
  163. [loading ZipFileIndexFileObject[/home/mahmood/excel-cmd/jsoup-1.10.3.jar(org/jsoup/parser/Tag.class)]]
  164. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/nio/charset/CharsetEncoder.class)]]
  165. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/nio/charset/Charset.class)]]
  166. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/io/UnsupportedEncodingException.class)]]
  167. [wrote RegularFileObject[MutationTaster.class]]
  168. [checking OneRow]
  169. [wrote RegularFileObject[OneRow.class]]
  170. [checking TheFrame]
  171. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/util/Vector.class)]]
  172. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/awt/event/WindowAdapter.class)]]
  173. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/awt/event/WindowListener.class)]]
  174. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/util/EventListener.class)]]
  175. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/awt/event/WindowStateListener.class)]]
  176. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/awt/event/WindowFocusListener.class)]]
  177. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/javax/swing/AbstractButton.class)]]
  178. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/awt/ItemSelectable.class)]]
  179. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/javax/swing/SwingConstants.class)]]
  180. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/awt/event/ActionListener.class)]]
  181. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/javax/swing/ScrollPaneConstants.class)]]
  182. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/javax/swing/JToggleButton.class)]]
  183. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/javax/swing/AbstractListModel.class)]]
  184. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/javax/swing/GroupLayout.class)]]
  185. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/awt/LayoutManager.class)]]
  186. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/awt/LayoutManager2.class)]]
  187. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/javax/swing/GroupLayout$ParallelGroup.class)]]
  188. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/javax/swing/GroupLayout$Group.class)]]
  189. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/javax/swing/GroupLayout$Spring.class)]]
  190. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/javax/swing/GroupLayout$SequentialGroup.class)]]
  191. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/javax/swing/GroupLayout$Alignment.class)]]
  192. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/javax/swing/LayoutStyle.class)]]
  193. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/javax/swing/LayoutStyle$ComponentPlacement.class)]]
  194. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/Enum.class)]]
  195. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/javax/swing/text/Caret.class)]]
  196. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/awt/geom/Rectangle2D.class)]]
  197. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/awt/geom/RectangularShape.class)]]
  198. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/awt/Shape.class)]]
  199. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/awt/event/FocusListener.class)]]
  200. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/awt/event/MouseListener.class)]]
  201. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/awt/event/MouseMotionListener.class)]]
  202. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/awt/Dialog.class)]]
  203. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/javax/swing/Icon.class)]]
  204. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/awt/PopupMenu.class)]]
  205. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/util/concurrent/RunnableFuture.class)]]
  206. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/util/concurrent/Future.class)]]
  207. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/Override.class)]]
  208. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/util/concurrent/TimeoutException.class)]]
  209. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/util/EventObject.class)]]
  210. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/javax/swing/SwingWorker$StateValue.class)]]
  211. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/javax/swing/UIManager.class)]]
  212. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/javax/swing/UIManager$LookAndFeelInfo.class)]]
  213. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/javax/swing/LookAndFeel.class)]]
  214. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/ClassNotFoundException.class)]]
  215. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/ReflectiveOperationException.class)]]
  216. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/util/logging/Level.class)]]
  217. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/Class.class)]]
  218. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/reflect/GenericDeclaration.class)]]
  219. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/reflect/AnnotatedElement.class)]]
  220. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/reflect/Type.class)]]
  221. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/util/logging/Logger.class)]]
  222. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/util/function/Supplier.class)]]
  223. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/InstantiationException.class)]]
  224. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/IllegalAccessException.class)]]
  225. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/javax/swing/UnsupportedLookAndFeelException.class)]]
  226. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/awt/EventQueue.class)]]
  227. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/awt/HeadlessException.class)]]
  228. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/UnsupportedOperationException.class)]]
  229. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/java/lang/NoSuchFieldError.class)]]
  230. [wrote RegularFileObject[TheFrame$1.class]]
  231. [wrote RegularFileObject[TheFrame$2.class]]
  232. [wrote RegularFileObject[TheFrame$3.class]]
  233. [wrote RegularFileObject[TheFrame$4.class]]
  234. [wrote RegularFileObject[TheFrame$5.class]]
  235. [wrote RegularFileObject[TheFrame$6.class]]
  236. [wrote RegularFileObject[TheFrame$7.class]]
  237. [wrote RegularFileObject[TheFrame$8.class]]
  238. [wrote RegularFileObject[TheFrame$9.class]]
  239. [wrote RegularFileObject[TheFrame$10.class]]
  240. [wrote RegularFileObject[TheFrame$11.class]]
  241. [wrote RegularFileObject[TheFrame$12.class]]
  242. [loading ZipFileIndexFileObject[/usr/lib/jvm/java-8-openjdk-amd64/lib/ct.sym(META-INF/sym/rt.jar/javax/swing/filechooser/FileFilter.class)]]
  243. [wrote RegularFileObject[TheFrame.class]]
  244. [checking Variations]
  245. [wrote RegularFileObject[Variations.class]]
  246. [total 1548ms]
  247. mahmood@u1604:excel-cmd$ java TheFrame
  248. 0
  249. 0
  250. 34
  251. 3
  252. /home/mahmood/excel-cmd/sample2/tmp/filtered_genes_names
  253. /home/mahmood/excel-cmd/sample2/tmp/
  254. SYN2
  255. /home/mahmood/excel-cmd/sample2/tmp/SYN2
  256. SYN2
  257. KCNN3
  258. /home/mahmood/excel-cmd/sample2/tmp/KCNN3
  259. KCNN3
  260. java.util.concurrent.ExecutionException: java.lang.NoClassDefFoundError: org/jsoup/Jsoup
  261. at java.util.concurrent.FutureTask.report(FutureTask.java:122)
  262. at java.util.concurrent.FutureTask.get(FutureTask.java:192)
  263. at javax.swing.SwingWorker.get(SwingWorker.java:602)
  264. at TheFrame$10.propertyChange(TheFrame.java:481)
  265. at java.beans.PropertyChangeSupport.fire(PropertyChangeSupport.java:335)
  266. at java.beans.PropertyChangeSupport.firePropertyChange(PropertyChangeSupport.java:327)
  267. at javax.swing.SwingWorker$SwingWorkerPropertyChangeSupport.firePropertyChange(SwingWorker.java:854)
  268. at javax.swing.SwingWorker$SwingWorkerPropertyChangeSupport$1.run(SwingWorker.java:860)
  269. at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.run(SwingWorker.java:832)
  270. at sun.swing.AccumulativeRunnable.run(AccumulativeRunnable.java:112)
  271. at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.actionPerformed(SwingWorker.java:842)
  272. at javax.swing.Timer.fireActionPerformed(Timer.java:313)
  273. at javax.swing.Timer$DoPostEvent.run(Timer.java:245)
  274. at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:311)
  275. at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:756)
  276. at java.awt.EventQueue.access$500(EventQueue.java:97)
  277. at java.awt.EventQueue$3.run(EventQueue.java:709)
  278. at java.awt.EventQueue$3.run(EventQueue.java:703)
  279. at java.security.AccessController.doPrivileged(Native Method)
  280. at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:80)
  281. at java.awt.EventQueue.dispatchEvent(EventQueue.java:726)
  282. at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)
  283. at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
  284. at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:109)
  285. at java.awt.WaitDispatchSupport$2.run(WaitDispatchSupport.java:184)
  286. at java.awt.WaitDispatchSupport$4.run(WaitDispatchSupport.java:229)
  287. at java.awt.WaitDispatchSupport$4.run(WaitDispatchSupport.java:227)
  288. at java.security.AccessController.doPrivileged(Native Method)
  289. at java.awt.WaitDispatchSupport.enter(WaitDispatchSupport.java:227)
  290. at java.awt.Dialog.show(Dialog.java:1084)
  291. at java.awt.Component.show(Component.java:1671)
  292. at java.awt.Component.setVisible(Component.java:1623)
  293. at java.awt.Window.setVisible(Window.java:1014)
  294. at java.awt.Dialog.setVisible(Dialog.java:1005)
  295. at TheFrame.Load(TheFrame.java:494)
  296. at TheFrame.filterGenesActionPerformed(TheFrame.java:360)
  297. at TheFrame.access$700(TheFrame.java:40)
  298. at TheFrame$7.actionPerformed(TheFrame.java:154)
  299. at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022)
  300. at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2348)
  301. at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
  302. at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
  303. at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:252)
  304. at java.awt.Component.processMouseEvent(Component.java:6533)
  305. at javax.swing.JComponent.processMouseEvent(JComponent.java:3324)
  306. at java.awt.Component.processEvent(Component.java:6298)
  307. at java.awt.Container.processEvent(Container.java:2236)
  308. at java.awt.Component.dispatchEventImpl(Component.java:4889)
  309. at java.awt.Container.dispatchEventImpl(Container.java:2294)
  310. at java.awt.Component.dispatchEvent(Component.java:4711)
  311. at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4888)
  312. at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4525)
  313. at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4466)
  314. at java.awt.Container.dispatchEventImpl(Container.java:2280)
  315. at java.awt.Window.dispatchEventImpl(Window.java:2746)
  316. at java.awt.Component.dispatchEvent(Component.java:4711)
  317. at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758)
  318. at java.awt.EventQueue.access$500(EventQueue.java:97)
  319. at java.awt.EventQueue$3.run(EventQueue.java:709)
  320. at java.awt.EventQueue$3.run(EventQueue.java:703)
  321. at java.security.AccessController.doPrivileged(Native Method)
  322. at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:80)
  323. at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:90)
  324. at java.awt.EventQueue$4.run(EventQueue.java:731)
  325. at java.awt.EventQueue$4.run(EventQueue.java:729)
  326. at java.security.AccessController.doPrivileged(Native Method)
  327. at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:80)
  328. at java.awt.EventQueue.dispatchEvent(EventQueue.java:728)
  329. at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)
  330. at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
  331. at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
  332. at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
  333. at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
  334. at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
  335. Caused by: java.lang.NoClassDefFoundError: org/jsoup/Jsoup
  336. at MutationTaster.connectForTranscript(MutationTaster.java:29)
  337. at ExcelFile.analyzeSequences(ExcelFile.java:707)
  338. at TheFrame$9.doInBackground(TheFrame.java:448)
  339. at TheFrame$9.doInBackground(TheFrame.java:418)
  340. at javax.swing.SwingWorker$1.call(SwingWorker.java:295)
  341. at java.util.concurrent.FutureTask.run(FutureTask.java:266)
  342. at javax.swing.SwingWorker.run(SwingWorker.java:334)
  343. at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
  344. at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
  345. at java.lang.Thread.run(Thread.java:748)
  346. Caused by: java.lang.ClassNotFoundException: org.jsoup.Jsoup
  347. at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
  348. at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
  349. at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:335)
  350. at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
  351. ... 10 more
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