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  1. * installing *source* package ‘rmgarch’ ...
  2. ** package ‘rmgarch’ successfully unpacked and MD5 sums checked
  3. staged installation is only possible with locking
  4. ** using non-staged installation
  5. ** libs
  6. g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG  -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/RcppArmadillo/include"  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-t3diwe/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c copulas.cpp -o copulas.o
  7. g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG  -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/RcppArmadillo/include"  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-t3diwe/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c gogarch.cpp -o gogarch.o
  8. g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG  -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/RcppArmadillo/include"  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-t3diwe/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c ica.cpp -o ica.o
  9. gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG  -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/RcppArmadillo/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-t3diwe/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c init.c -o init.o
  10. g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG  -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/RcppArmadillo/include"  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-t3diwe/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c rdcc.cpp -o rdcc.o
  11. g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG  -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/RcppArmadillo/include"  -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-t3diwe/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c rmdist.cpp -o rmdist.o
  12. Your logged in an R session as root
  13. g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o rmgarch.so copulas.o gogarch.o ica.o init.o rdcc.o rmdist.o Makevars Makevars.win copulas.cpp copulas.h copulas.o gogarch.cpp gogarch.h gogarch.o ica.cpp ica.h ica.o init.c init.o rdcc.cpp rdcc.h rdcc.o rmdist.cpp rmdist.h rmdist.o Makevars Makevars.win copulas.cpp copulas.h copulas.o gogarch.cpp gogarch.h gogarch.o ica.cpp ica.h ica.o init.c init.o rdcc.cpp rdcc.h rdcc.o rmdist.cpp rmdist.h rmdist.o -llapack -lblas -lgfortran -lm -lquadmath -fopenmp -L/usr/lib/R/lib -lR
  14. Your logged in an R session as root
  15. In file included from copulas.h:19:0,
  16.                  from copulas.cpp:18:
  17. rmdist.h:23:10: fatal error: R.h: No such file or directory
  18.  #include <R.h>
  19.           ^~~~~
  20. compilation terminated.
  21. In file included from copulas.h:19:0:
  22. rmdist.h:23:10: fatal error: R.h: No such file or directory
  23.  #include <R.h>
  24.           ^~~~~
  25. compilation terminated.
  26. In file included from gogarch.cpp:18:0:
  27. gogarch.h:19:10: fatal error: RcppArmadillo.h: No such file or directory
  28.  #include <RcppArmadillo.h>
  29.           ^~~~~~~~~~~~~~~~~
  30. compilation terminated.
  31. gogarch.h:19:10: fatal error: RcppArmadillo.h: No such file or directory
  32.  #include <RcppArmadillo.h>
  33.           ^~~~~~~~~~~~~~~~~
  34. compilation terminated.
  35. In file included from ica.cpp:18:0:
  36. ica.h:20:10: fatal error: RcppArmadillo.h: No such file or directory
  37.  #include <RcppArmadillo.h>
  38.           ^~~~~~~~~~~~~~~~~
  39. compilation terminated.
  40. ica.h:20:10: fatal error: RcppArmadillo.h: No such file or directory
  41.  #include <RcppArmadillo.h>
  42.           ^~~~~~~~~~~~~~~~~
  43. compilation terminated.
  44. init.c:1:10: fatal error: R.h: No such file or directory
  45.  #include <R.h>
  46.           ^~~~~
  47. compilation terminated.
  48. In file included from rdcc.cpp:18:0:
  49. rdcc.h:19:10: fatal error: RcppArmadillo.h: No such file or directory
  50.  #include <RcppArmadillo.h>
  51.           ^~~~~~~~~~~~~~~~~
  52. compilation terminated.
  53. rdcc.h:19:10: fatal error: RcppArmadillo.h: No such file or directory
  54.  #include <RcppArmadillo.h>
  55.           ^~~~~~~~~~~~~~~~~
  56. compilation terminated.
  57. In file included from rmdist.cpp:17:0:
  58. rmdist.h:23:10: fatal error: R.h: No such file or directory
  59.  #include <R.h>
  60.           ^~~~~
  61. compilation terminated.
  62. rmdist.h:23:10: fatal error: R.h: No such file or directory
  63.  #include <R.h>
  64.           ^~~~~
  65. compilation terminated.
  66. In file included from copulas.h:19:0,
  67.                  from copulas.cpp:18:
  68. rmdist.h:23:10: fatal error: R.h: No such file or directory
  69.  #include <R.h>
  70.           ^~~~~
  71. compilation terminated.
  72. In file included from copulas.h:19:0:
  73. rmdist.h:23:10: fatal error: R.h: No such file or directory
  74.  #include <R.h>
  75.           ^~~~~
  76. compilation terminated.
  77. In file included from gogarch.cpp:18:0:
  78. gogarch.h:19:10: fatal error: RcppArmadillo.h: No such file or directory
  79.  #include <RcppArmadillo.h>
  80.           ^~~~~~~~~~~~~~~~~
  81. compilation terminated.
  82. gogarch.h:19:10: fatal error: RcppArmadillo.h: No such file or directory
  83.  #include <RcppArmadillo.h>
  84.           ^~~~~~~~~~~~~~~~~
  85. compilation terminated.
  86. In file included from ica.cpp:18:0:
  87. ica.h:20:10: fatal error: RcppArmadillo.h: No such file or directory
  88.  #include <RcppArmadillo.h>
  89.           ^~~~~~~~~~~~~~~~~
  90. compilation terminated.
  91. ica.h:20:10: fatal error: RcppArmadillo.h: No such file or directory
  92.  #include <RcppArmadillo.h>
  93.           ^~~~~~~~~~~~~~~~~
  94. compilation terminated.
  95. init.c:1:10: fatal error: R.h: No such file or directory
  96.  #include <R.h>
  97.           ^~~~~
  98. compilation terminated.
  99. In file included from rdcc.cpp:18:0:
  100. rdcc.h:19:10: fatal error: RcppArmadillo.h: No such file or directory
  101.  #include <RcppArmadillo.h>
  102.           ^~~~~~~~~~~~~~~~~
  103. compilation terminated.
  104. rdcc.h:19:10: fatal error: RcppArmadillo.h: No such file or directory
  105.  #include <RcppArmadillo.h>
  106.           ^~~~~~~~~~~~~~~~~
  107. compilation terminated.
  108. In file included from rmdist.cpp:17:0:
  109. rmdist.h:23:10: fatal error: R.h: No such file or directory
  110.  #include <R.h>
  111.           ^~~~~
  112. compilation terminated.
  113. rmdist.h:23:10: fatal error: R.h: No such file or directory
  114.  #include <R.h>
  115.           ^~~~~
  116. compilation terminated.
  117. /usr/share/R/share/make/shlib.mk:6: recipe for target 'rmgarch.so' failed
  118. make: *** [rmgarch.so] Error 1
  119. ERROR: compilation failed for package ‘rmgarch’
  120. * removing ‘/usr/local/lib/R/site-library/rmgarch’
  121. Warning in install.packages :
  122.   installation of package ‘rmgarch’ had non-zero exit status
  123.  
  124. The downloaded source packages are in
  125.     ‘/tmp/RtmpiZReA5/downloaded_packages’
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