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- qpAdm: parameter file: /home/ash/Downloads/results/wang2019/qpAdm__1846163417.par
- allsnps: YES
- ## qpAdm version: 1000
- seed: 2080087965
- left pops:
- Steppe_Eneolithic
- EEHG
- Georgia_Kotias.SG
- WSHG
- right pops:
- Mbuti.DG
- Ust_Ishim.DG
- Kostenki14.SG
- Russia_MA1.SG
- Han.DG
- Papuan.DG
- Onge.DG
- Italy_Villabruna
- Czech_Vestonice16
- Iberia_ElMiron
- Ethiopia_4500BP.SG
- Karitiana.DG
- Natufian
- Ganj_Dareh_N
- Georgia_Satsurblia.SG
- 0 Steppe_Eneolithic 3
- 1 EEHG 4
- 2 Georgia_Kotias.SG 1
- 3 WSHG 3
- 4 Mbuti.DG 5
- 5 Ust_Ishim.DG 1
- 6 Kostenki14.SG 1
- 7 Russia_MA1.SG 1
- 8 Han.DG 4
- 9 Papuan.DG 15
- 10 Onge.DG 2
- 11 Italy_Villabruna 1
- 12 Czech_Vestonice16 1
- 13 Iberia_ElMiron 1
- 14 Ethiopia_4500BP.SG 1
- 15 Karitiana.DG 4
- 16 Natufian 6
- 17 Ganj_Dareh_N 7
- 18 Georgia_Satsurblia.SG 1
- jackknife block size: 0.050
- snps: 1150542 indivs: 62
- number of blocks for block jackknife: 552
- ## ncols: 1150542
- coverage: Steppe_Eneolithic 1017729
- coverage: EEHG 1029995
- coverage: Georgia_Kotias.SG 1149097
- coverage: WSHG 858019
- coverage: Mbuti.DG 1150376
- coverage: Ust_Ishim.DG 1062044
- coverage: Kostenki14.SG 1048972
- coverage: Russia_MA1.SG 805960
- coverage: Han.DG 1150414
- coverage: Papuan.DG 1121459
- coverage: Onge.DG 1120748
- coverage: Italy_Villabruna 883779
- coverage: Czech_Vestonice16 732091
- coverage: Iberia_ElMiron 626974
- coverage: Ethiopia_4500BP.SG 1149598
- coverage: Karitiana.DG 1150373
- coverage: Natufian 535079
- coverage: Ganj_Dareh_N 1029695
- coverage: Georgia_Satsurblia.SG 801311
- dof (jackknife): 465.880
- numsnps used: 1150542
- codimension 1
- f4info:
- f4rank: 2 dof: 12 chisq: 86.341 tail: 2.51232884e-13 dofdiff: 14 chisqdiff: -86.341 taildiff: 1
- B:
- scale 1.000 1.000
- Ust_Ishim.DG 0.375 -0.294
- Kostenki14.SG 0.618 0.837
- Russia_MA1.SG 1.902 -0.750
- Han.DG 0.873 -0.977
- Papuan.DG 0.560 -0.762
- Onge.DG 0.571 -0.533
- Italy_Villabruna 0.949 2.616
- Czech_Vestonice16 0.749 1.013
- Iberia_ElMiron 0.729 1.070
- Ethiopia_4500BP.SG -0.043 0.079
- Karitiana.DG 1.921 -1.113
- Natufian -0.100 0.518
- Ganj_Dareh_N -0.658 -0.546
- Georgia_Satsurblia.SG -1.527 0.075
- A:
- scale 399.732 1334.957
- EEHG 0.931 1.091
- Georgia_Kotias.SG -0.994 -0.425
- WSHG 1.070 -1.277
- full rank
- f4info:
- f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 12 chisqdiff: 86.341 taildiff: 2.51232884e-13
- B:
- scale 415.602 351.803 345.491
- Ust_Ishim.DG 0.154 -0.405 0.377
- Kostenki14.SG 0.788 -0.709 0.270
- Russia_MA1.SG 1.474 -1.745 2.001
- Han.DG 0.632 -0.564 1.208
- Papuan.DG 0.286 -0.560 0.747
- Onge.DG 0.399 -0.483 0.707
- Italy_Villabruna 1.785 -1.343 0.004
- Czech_Vestonice16 1.055 -0.746 0.403
- Iberia_ElMiron 0.969 -0.903 0.296
- Ethiopia_4500BP.SG -0.087 -0.042 -0.094
- Karitiana.DG 1.661 -1.392 2.241
- Natufian -0.050 -0.160 -0.346
- Ganj_Dareh_N -1.171 0.092 -0.708
- Georgia_Satsurblia.SG -1.078 2.068 -1.166
- A:
- scale 1.732 1.732 1.732
- EEHG 1.732 0.000 0.000
- Georgia_Kotias.SG 0.000 1.732 0.000
- WSHG 0.000 0.000 1.732
- best coefficients: 0.362 0.494 0.144
- Jackknife mean: 0.360309670 0.493857431 0.145832899
- std. errors: 0.060 0.021 0.055
- error covariance (* 1,000,000)
- 3645 -558 -3087
- -558 458 100
- -3087 100 2987
- summ: Steppe_Eneolithic 3 0.000000 0.360 0.494 0.146 3645 -558 -3087 458 100 ...
- 2987
- fixed pat wt dof chisq tail prob
- 000 0 12 86.341 2.51233e-13 0.362 0.494 0.144
- 001 1 13 94.864 1.62888e-14 0.508 0.492 0.000
- 010 1 13 222.910 0 4.800 0.000 -3.800 infeasible
- 100 1 13 133.223 4.76454e-22 0.000 0.552 0.448
- 011 2 14 583.873 0 1.000 0.000 0.000
- 101 2 14 408.169 0 0.000 1.000 0.000
- 110 2 14 943.677 0 0.000 0.000 1.000
- best pat: 000 2.51233e-13 - -
- best pat: 100 4.76454e-22 chi(nested): 46.882 p-value for nested model: 7.538e-12
- best pat: 101 2.40792e-78 chi(nested): 274.946 p-value for nested model: 9.48569e-62
- coeffs: 0.362 0.494 0.144
- ## dscore:: f_4(Base, Fit, Rbase, right2)
- ## genstat:: f_4(Base, Fit, right1, right2)
- details: EEHG Ust_Ishim.DG 0.000370 1.028499
- details: Georgia_Kotias.SG Ust_Ishim.DG -0.001150 -2.592833
- details: WSHG Ust_Ishim.DG 0.001091 3.059562
- dscore: Ust_Ishim.DG f4: -0.000277 Z: -0.914771
- details: EEHG Kostenki14.SG 0.001897 4.711243
- details: Georgia_Kotias.SG Kostenki14.SG -0.002014 -4.267318
- details: WSHG Kostenki14.SG 0.000780 2.060200
- dscore: Kostenki14.SG f4: -0.000197 Z: -0.604168
- details: EEHG Russia_MA1.SG 0.003546 9.157645
- details: Georgia_Kotias.SG Russia_MA1.SG -0.004959 -10.403064
- details: WSHG Russia_MA1.SG 0.005792 15.017044
- dscore: Russia_MA1.SG f4: -0.000332 Z: -1.033599
- details: EEHG Han.DG 0.001522 5.133987
- details: Georgia_Kotias.SG Han.DG -0.001603 -4.326381
- details: WSHG Han.DG 0.003496 12.022272
- dscore: Han.DG f4: 0.000263 Z: 1.058429
- details: EEHG Papuan.DG 0.000689 2.148789
- details: Georgia_Kotias.SG Papuan.DG -0.001592 -4.090717
- details: WSHG Papuan.DG 0.002161 7.222001
- dscore: Papuan.DG f4: -0.000225 Z: -0.862455
- details: EEHG Onge.DG 0.000961 2.848477
- details: Georgia_Kotias.SG Onge.DG -0.001374 -3.311507
- details: WSHG Onge.DG 0.002048 6.666933
- dscore: Onge.DG f4: -0.000036 Z: -0.126766
- details: EEHG Italy_Villabruna 0.004296 10.612025
- details: Georgia_Kotias.SG Italy_Villabruna -0.003817 -8.023442
- details: WSHG Italy_Villabruna 0.000012 0.029077
- dscore: Italy_Villabruna f4: -0.000331 Z: -1.016109
- details: EEHG Czech_Vestonice16 0.002537 7.151421
- details: Georgia_Kotias.SG Czech_Vestonice16 -0.002119 -4.961469
- details: WSHG Czech_Vestonice16 0.001165 3.323455
- dscore: Czech_Vestonice16 f4: 0.000039 Z: 0.131899
- details: EEHG Iberia_ElMiron 0.002331 7.508817
- details: Georgia_Kotias.SG Iberia_ElMiron -0.002566 -6.754824
- details: WSHG Iberia_ElMiron 0.000857 2.500416
- dscore: Iberia_ElMiron f4: -0.000301 Z: -1.155031
- details: EEHG Ethiopia_4500BP.SG -0.000209 -0.817635
- details: Georgia_Kotias.SG Ethiopia_4500BP.SG -0.000119 -0.369556
- details: WSHG Ethiopia_4500BP.SG -0.000272 -1.099144
- dscore: Ethiopia_4500BP.SG f4: -0.000173 Z: -0.794883
- details: EEHG Karitiana.DG 0.003997 10.818129
- details: Georgia_Kotias.SG Karitiana.DG -0.003958 -9.424845
- details: WSHG Karitiana.DG 0.006487 18.855677
- dscore: Karitiana.DG f4: 0.000426 Z: 1.468763
- details: EEHG Natufian -0.000119 -0.452767
- details: Georgia_Kotias.SG Natufian -0.000456 -1.566859
- details: WSHG Natufian -0.001002 -3.835004
- dscore: Natufian f4: -0.000413 Z: -1.986472
- details: EEHG Ganj_Dareh_N -0.002818 -9.034594
- details: Georgia_Kotias.SG Ganj_Dareh_N 0.000260 0.677411
- details: WSHG Ganj_Dareh_N -0.002050 -6.476349
- dscore: Ganj_Dareh_N f4: -0.001186 Z: -4.517054
- details: EEHG Georgia_Satsurblia.SG -0.002594 -7.610305
- details: Georgia_Kotias.SG Georgia_Satsurblia.SG 0.005878 11.724067
- details: WSHG Georgia_Satsurblia.SG -0.003375 -9.333091
- dscore: Georgia_Satsurblia.SG f4: 0.001479 Z: 4.675301
- gendstat: Mbuti.DG Ust_Ishim.DG -0.915
- gendstat: Mbuti.DG Kostenki14.SG -0.604
- gendstat: Mbuti.DG Russia_MA1.SG -1.034
- gendstat: Mbuti.DG Han.DG 1.058
- gendstat: Mbuti.DG Papuan.DG -0.862
- gendstat: Mbuti.DG Onge.DG -0.127
- gendstat: Mbuti.DG Italy_Villabruna -1.016
- gendstat: Mbuti.DG Czech_Vestonice16 0.132
- gendstat: Mbuti.DG Iberia_ElMiron -1.155
- gendstat: Mbuti.DG Ethiopia_4500BP.SG -0.795
- gendstat: Mbuti.DG Karitiana.DG 1.469
- gendstat: Mbuti.DG Natufian -1.986
- gendstat: Mbuti.DG Ganj_Dareh_N -4.517
- gendstat: Mbuti.DG Georgia_Satsurblia.SG 4.675
- gendstat: Ust_Ishim.DG Kostenki14.SG 0.216
- gendstat: Ust_Ishim.DG Russia_MA1.SG -0.145
- gendstat: Ust_Ishim.DG Han.DG 1.737
- gendstat: Ust_Ishim.DG Papuan.DG 0.165
- gendstat: Ust_Ishim.DG Onge.DG 0.715
- gendstat: Ust_Ishim.DG Italy_Villabruna -0.143
- gendstat: Ust_Ishim.DG Czech_Vestonice16 0.877
- gendstat: Ust_Ishim.DG Iberia_ElMiron -0.070
- gendstat: Ust_Ishim.DG Ethiopia_4500BP.SG 0.293
- gendstat: Ust_Ishim.DG Karitiana.DG 1.973
- gendstat: Ust_Ishim.DG Natufian -0.422
- gendstat: Ust_Ishim.DG Ganj_Dareh_N -2.731
- gendstat: Ust_Ishim.DG Georgia_Satsurblia.SG 4.390
- gendstat: Kostenki14.SG Russia_MA1.SG -0.363
- gendstat: Kostenki14.SG Han.DG 1.460
- gendstat: Kostenki14.SG Papuan.DG -0.086
- gendstat: Kostenki14.SG Onge.DG 0.466
- gendstat: Kostenki14.SG Italy_Villabruna -0.365
- gendstat: Kostenki14.SG Czech_Vestonice16 0.650
- gendstat: Kostenki14.SG Iberia_ElMiron -0.309
- gendstat: Kostenki14.SG Ethiopia_4500BP.SG 0.063
- gendstat: Kostenki14.SG Karitiana.DG 1.807
- gendstat: Kostenki14.SG Natufian -0.663
- gendstat: Kostenki14.SG Ganj_Dareh_N -2.886
- gendstat: Kostenki14.SG Georgia_Satsurblia.SG 4.066
- gendstat: Russia_MA1.SG Han.DG 1.879
- gendstat: Russia_MA1.SG Papuan.DG 0.318
- gendstat: Russia_MA1.SG Onge.DG 0.841
- gendstat: Russia_MA1.SG Italy_Villabruna 0.002
- gendstat: Russia_MA1.SG Czech_Vestonice16 1.037
- gendstat: Russia_MA1.SG Iberia_ElMiron 0.087
- gendstat: Russia_MA1.SG Ethiopia_4500BP.SG 0.430
- gendstat: Russia_MA1.SG Karitiana.DG 2.272
- gendstat: Russia_MA1.SG Natufian -0.240
- gendstat: Russia_MA1.SG Ganj_Dareh_N -2.478
- gendstat: Russia_MA1.SG Georgia_Satsurblia.SG 4.556
- gendstat: Han.DG Papuan.DG -1.982
- gendstat: Han.DG Onge.DG -1.161
- gendstat: Han.DG Italy_Villabruna -1.765
- gendstat: Han.DG Czech_Vestonice16 -0.724
- gendstat: Han.DG Iberia_ElMiron -1.797
- gendstat: Han.DG Ethiopia_4500BP.SG -1.489
- gendstat: Han.DG Karitiana.DG 0.657
- gendstat: Han.DG Natufian -2.453
- gendstat: Han.DG Ganj_Dareh_N -5.056
- gendstat: Han.DG Georgia_Satsurblia.SG 3.387
- gendstat: Papuan.DG Onge.DG 0.681
- gendstat: Papuan.DG Italy_Villabruna -0.295
- gendstat: Papuan.DG Czech_Vestonice16 0.831
- gendstat: Papuan.DG Iberia_ElMiron -0.242
- gendstat: Papuan.DG Ethiopia_4500BP.SG 0.169
- gendstat: Papuan.DG Karitiana.DG 2.161
- gendstat: Papuan.DG Natufian -0.659
- gendstat: Papuan.DG Ganj_Dareh_N -3.240
- gendstat: Papuan.DG Georgia_Satsurblia.SG 4.595
- gendstat: Onge.DG Italy_Villabruna -0.774
- gendstat: Onge.DG Czech_Vestonice16 0.213
- gendstat: Onge.DG Iberia_ElMiron -0.785
- gendstat: Onge.DG Ethiopia_4500BP.SG -0.420
- gendstat: Onge.DG Karitiana.DG 1.427
- gendstat: Onge.DG Natufian -1.262
- gendstat: Onge.DG Ganj_Dareh_N -3.671
- gendstat: Onge.DG Georgia_Satsurblia.SG 3.953
- gendstat: Italy_Villabruna Czech_Vestonice16 1.009
- gendstat: Italy_Villabruna Iberia_ElMiron 0.087
- gendstat: Italy_Villabruna Ethiopia_4500BP.SG 0.422
- gendstat: Italy_Villabruna Karitiana.DG 2.090
- gendstat: Italy_Villabruna Natufian -0.249
- gendstat: Italy_Villabruna Ganj_Dareh_N -2.471
- gendstat: Italy_Villabruna Georgia_Satsurblia.SG 4.390
- gendstat: Czech_Vestonice16 Iberia_ElMiron -1.064
- gendstat: Czech_Vestonice16 Ethiopia_4500BP.SG -0.639
- gendstat: Czech_Vestonice16 Karitiana.DG 1.090
- gendstat: Czech_Vestonice16 Natufian -1.480
- gendstat: Czech_Vestonice16 Ganj_Dareh_N -3.573
- gendstat: Czech_Vestonice16 Georgia_Satsurblia.SG 3.623
- gendstat: Iberia_ElMiron Ethiopia_4500BP.SG 0.409
- gendstat: Iberia_ElMiron Karitiana.DG 2.172
- gendstat: Iberia_ElMiron Natufian -0.400
- gendstat: Iberia_ElMiron Ganj_Dareh_N -2.695
- gendstat: Iberia_ElMiron Georgia_Satsurblia.SG 4.622
- gendstat: Ethiopia_4500BP.SG Karitiana.DG 1.737
- gendstat: Ethiopia_4500BP.SG Natufian -0.844
- gendstat: Ethiopia_4500BP.SG Ganj_Dareh_N -3.214
- gendstat: Ethiopia_4500BP.SG Georgia_Satsurblia.SG 4.564
- gendstat: Karitiana.DG Natufian -2.651
- gendstat: Karitiana.DG Ganj_Dareh_N -5.015
- gendstat: Karitiana.DG Georgia_Satsurblia.SG 2.642
- gendstat: Natufian Ganj_Dareh_N -2.788
- gendstat: Natufian Georgia_Satsurblia.SG 5.434
- gendstat: Ganj_Dareh_N Georgia_Satsurblia.SG 8.252
- ##end of qpAdm: 1043.916 seconds cpu 1477.804 Mbytes in use
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