API tools faq
paste
misnomer001

arm_lba dalimlba success

misnomer001
Jan 21st, 2020
153
0
Never
Add comment
Not a member of Pastebin yet? Sign Up, it unlocks many cool features!
text 12.14 KB | None | 0 0
raw download clone embed print report
  1. allsnps: YES
  2. ## qpAdm version: 810
  3. seed: 2117990742
  4.  
  5. left pops:
  6. Armenia_LBA.SG
  7. Caucasus_Kura_Araxes
  8. Dali_MLBA
  9.  
  10. right pops:
  11. Sarazm_EN
  12. Ganj_Dareh_N
  13. PPN
  14. Anatolia_N
  15. Iberia_MN
  16. CHG
  17. EEHG
  18. WEHG
  19. WSHG
  20. Onge.DG
  21. Russia_Shamanka_EN.SG
  22. Steppe_Eneolithic
  23. Caucasus_Eneolithic
  24. Kazakhstan_Botai.SG
  25.  
  26. 0 Armenia_LBA.SG 5
  27. 1 Caucasus_Kura_Araxes 4
  28. 2 Dali_MLBA 3
  29. 3 Sarazm_EN 2
  30. 4 Ganj_Dareh_N 7
  31. 5 PPN 8
  32. 6 Anatolia_N 22
  33. 7 Iberia_MN 4
  34. 8 CHG 2
  35. 9 EEHG 4
  36. 10 WEHG 36
  37. 11 WSHG 3
  38. 12 Onge.DG 2
  39. 13 Russia_Shamanka_EN.SG 10
  40. 14 Steppe_Eneolithic 3
  41. 15 Caucasus_Eneolithic 3
  42. 16 Kazakhstan_Botai.SG 3
  43. jackknife block size: 0.050
  44. snps: 1150475 indivs: 121
  45. number of blocks for block jackknife: 552
  46. ## ncols: 1150475
  47. coverage: Armenia_LBA.SG 543198
  48. coverage: Caucasus_Kura_Araxes 967288
  49. coverage: Dali_MLBA 931588
  50. coverage: Sarazm_EN 867960
  51. coverage: Ganj_Dareh_N 1029695
  52. coverage: PPN 835499
  53. coverage: Anatolia_N 1134099
  54. coverage: Iberia_MN 967760
  55. coverage: CHG 1149558
  56. coverage: EEHG 1029995
  57. coverage: WEHG 1141246
  58. coverage: WSHG 858019
  59. coverage: Onge.DG 1120748
  60. coverage: Russia_Shamanka_EN.SG 1149998
  61. coverage: Steppe_Eneolithic 1017729
  62. coverage: Caucasus_Eneolithic 784983
  63. coverage: Kazakhstan_Botai.SG 1149870
  64. dof (jackknife): 462.150
  65. numsnps used: 1150475
  66. codimension 1
  67. f4info:
  68. f4rank: 1 dof: 12 chisq: 8.121 tail: 0.775585812 dofdiff: 14 chisqdiff: -8.121 taildiff: 1
  69. B:
  70. scale 1.000
  71. Ganj_Dareh_N -0.244
  72. PPN -0.426
  73. Anatolia_N -0.213
  74. Iberia_MN 0.197
  75. CHG -0.330
  76. EEHG 1.723
  77. WEHG 1.664
  78. WSHG 1.519
  79. Onge.DG 0.598
  80. Russia_Shamanka_EN.SG 1.026
  81. Steppe_Eneolithic 0.679
  82. Caucasus_Eneolithic -0.314
  83. Kazakhstan_Botai.SG 1.598
  84. A:
  85. scale 829.852
  86. Caucasus_Kura_Araxes -0.411
  87. Dali_MLBA 1.353
  88.  
  89.  
  90. full rank
  91. f4info:
  92. f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 12 chisqdiff: 8.121 taildiff: 0.775585812
  93. B:
  94. scale 1.000 1.000
  95. Ganj_Dareh_N -0.258 0.868
  96. PPN -0.437 -0.216
  97. Anatolia_N -0.233 0.547
  98. Iberia_MN 0.192 1.679
  99. CHG -0.336 1.708
  100. EEHG 1.723 -1.449
  101. WEHG 1.657 -0.440
  102. WSHG 1.521 -0.343
  103. Onge.DG 0.591 -0.385
  104. Russia_Shamanka_EN.SG 1.015 1.388
  105. Steppe_Eneolithic 0.681 -1.053
  106. Caucasus_Eneolithic -0.314 -0.239
  107. Kazakhstan_Botai.SG 1.604 0.716
  108. A:
  109. scale 846.949 10864.400
  110. Caucasus_Kura_Araxes -0.460 -1.163
  111. Dali_MLBA 1.337 -0.804
  112.  
  113.  
  114. best coefficients: 0.767 0.233
  115. Jackknife mean: 0.766601378 0.233398622
  116. std. errors: 0.026 0.026
  117.  
  118. error covariance (* 1000000)
  119. 670 -670
  120. -670 670
  121.  
  122.  
  123. summ: Armenia_LBA.SG 2 0.775586 0.767 0.233 670 -670 670
  124.  
  125. fixed pat wt dof chisq tail prob
  126. 00 0 12 8.121 0.775586 0.767 0.233
  127. 01 1 13 76.226 5.62266e-11 1.000 0.000
  128. 10 1 13 501.012 0 0.000 1.000
  129. best pat: 00 0.775586 - -
  130. best pat: 01 5.62266e-11 chi(nested): 68.105 p-value for nested model: 1.5501e-16
  131.  
  132. coeffs: 0.767 0.233
  133.  
  134. ## dscore:: f_4(Base, Fit, Rbase, right2)
  135. ## genstat:: f_4(Base, Fit, right1, right2)
  136.  
  137. details: Caucasus_Kura_Araxes Ganj_Dareh_N -0.000099 -0.444509
  138. details: Dali_MLBA Ganj_Dareh_N -0.000579 -2.459316
  139. dscore: Ganj_Dareh_N f4: -0.000211 Z: -1.035064
  140.  
  141. details: Caucasus_Kura_Araxes PPN 0.000088 0.347879
  142. details: Dali_MLBA PPN -0.000792 -2.961061
  143. dscore: PPN f4: -0.000117 Z: -0.507791
  144.  
  145. details: Caucasus_Kura_Araxes Anatolia_N -0.000114 -0.469347
  146. details: Dali_MLBA Anatolia_N -0.000529 -2.004409
  147. dscore: Anatolia_N f4: -0.000211 Z: -0.960062
  148.  
  149. details: Caucasus_Kura_Araxes Iberia_MN -0.000441 -1.877360
  150. details: Dali_MLBA Iberia_MN 0.000083 0.316250
  151. dscore: Iberia_MN f4: -0.000319 Z: -1.492426
  152.  
  153. details: Caucasus_Kura_Araxes CHG -0.000157 -0.674188
  154. details: Dali_MLBA CHG -0.000748 -2.923816
  155. dscore: CHG f4: -0.000295 Z: -1.386012
  156.  
  157. details: Caucasus_Kura_Araxes EEHG -0.000901 -3.630549
  158. details: Dali_MLBA EEHG 0.002762 10.393769
  159. dscore: EEHG f4: -0.000048 Z: -0.211570
  160.  
  161. details: Caucasus_Kura_Araxes WEHG -0.001046 -4.140624
  162. details: Dali_MLBA WEHG 0.002525 8.654258
  163. dscore: WEHG f4: -0.000213 Z: -0.926813
  164.  
  165. details: Caucasus_Kura_Araxes WSHG -0.000917 -3.717190
  166. details: Dali_MLBA WSHG 0.002358 8.954329
  167. dscore: WSHG f4: -0.000154 Z: -0.687373
  168.  
  169. details: Caucasus_Kura_Araxes Onge.DG -0.000430 -1.794545
  170. details: Dali_MLBA Onge.DG 0.000868 3.209868
  171. dscore: Onge.DG f4: -0.000127 Z: -0.586253
  172.  
  173. details: Caucasus_Kura_Araxes Russia_Shamanka_EN.SG -0.000858 -3.452946
  174. details: Dali_MLBA Russia_Shamanka_EN.SG 0.001409 5.027574
  175. dscore: Russia_Shamanka_EN.SG f4: -0.000330 Z: -1.450886
  176.  
  177. details: Caucasus_Kura_Araxes Steppe_Eneolithic -0.000414 -1.774688
  178. details: Dali_MLBA Steppe_Eneolithic 0.001073 4.351851
  179. dscore: Steppe_Eneolithic f4: -0.000068 Z: -0.324481
  180.  
  181. details: Caucasus_Kura_Araxes Caucasus_Eneolithic 0.000051 0.211706
  182. details: Dali_MLBA Caucasus_Eneolithic -0.000556 -2.085802
  183. dscore: Caucasus_Eneolithic f4: -0.000090 Z: -0.409989
  184.  
  185. details: Caucasus_Kura_Araxes Kazakhstan_Botai.SG -0.001074 -4.629584
  186. details: Dali_MLBA Kazakhstan_Botai.SG 0.002421 9.601860
  187. dscore: Kazakhstan_Botai.SG f4: -0.000259 Z: -1.222508
  188.  
  189. gendstat: Sarazm_EN Ganj_Dareh_N -1.035
  190. gendstat: Sarazm_EN PPN -0.508
  191. gendstat: Sarazm_EN Anatolia_N -0.960
  192. gendstat: Sarazm_EN Iberia_MN -1.492
  193. gendstat: Sarazm_EN CHG -1.386
  194. gendstat: Sarazm_EN EEHG -0.212
  195. gendstat: Sarazm_EN WEHG -0.927
  196. gendstat: Sarazm_EN WSHG -0.687
  197. gendstat: Sarazm_EN Onge.DG -0.586
  198. gendstat: Sarazm_EN Russia_Shamanka_EN.SG -1.451
  199. gendstat: Sarazm_EN Steppe_Eneolithic -0.324
  200. gendstat: Sarazm_EN Caucasus_Eneolithic -0.410
  201. gendstat: Sarazm_EN Kazakhstan_Botai.SG -1.223
  202. gendstat: Ganj_Dareh_N PPN 0.447
  203. gendstat: Ganj_Dareh_N Anatolia_N 0.002
  204. gendstat: Ganj_Dareh_N Iberia_MN -0.586
  205. gendstat: Ganj_Dareh_N CHG -0.427
  206. gendstat: Ganj_Dareh_N EEHG 0.784
  207. gendstat: Ganj_Dareh_N WEHG -0.013
  208. gendstat: Ganj_Dareh_N WSHG 0.264
  209. gendstat: Ganj_Dareh_N Onge.DG 0.411
  210. gendstat: Ganj_Dareh_N Russia_Shamanka_EN.SG -0.611
  211. gendstat: Ganj_Dareh_N Steppe_Eneolithic 0.774
  212. gendstat: Ganj_Dareh_N Caucasus_Eneolithic 0.558
  213. gendstat: Ganj_Dareh_N Kazakhstan_Botai.SG -0.242
  214. gendstat: PPN Anatolia_N -0.560
  215. gendstat: PPN Iberia_MN -1.064
  216. gendstat: PPN CHG -0.821
  217. gendstat: PPN EEHG 0.296
  218. gendstat: PPN WEHG -0.492
  219. gendstat: PPN WSHG -0.160
  220. gendstat: PPN Onge.DG -0.048
  221. gendstat: PPN Russia_Shamanka_EN.SG -1.024
  222. gendstat: PPN Steppe_Eneolithic 0.232
  223. gendstat: PPN Caucasus_Eneolithic 0.117
  224. gendstat: PPN Kazakhstan_Botai.SG -0.655
  225. gendstat: Anatolia_N Iberia_MN -0.754
  226. gendstat: Anatolia_N CHG -0.453
  227. gendstat: Anatolia_N EEHG 0.828
  228. gendstat: Anatolia_N WEHG -0.021
  229. gendstat: Anatolia_N WSHG 0.288
  230. gendstat: Anatolia_N Onge.DG 0.457
  231. gendstat: Anatolia_N Russia_Shamanka_EN.SG -0.703
  232. gendstat: Anatolia_N Steppe_Eneolithic 0.861
  233. gendstat: Anatolia_N Caucasus_Eneolithic 0.594
  234. gendstat: Anatolia_N Kazakhstan_Botai.SG -0.275
  235. gendstat: Iberia_MN CHG 0.118
  236. gendstat: Iberia_MN EEHG 1.308
  237. gendstat: Iberia_MN WEHG 0.674
  238. gendstat: Iberia_MN WSHG 0.769
  239. gendstat: Iberia_MN Onge.DG 0.971
  240. gendstat: Iberia_MN Russia_Shamanka_EN.SG -0.056
  241. gendstat: Iberia_MN Steppe_Eneolithic 1.349
  242. gendstat: Iberia_MN Caucasus_Eneolithic 1.077
  243. gendstat: Iberia_MN Kazakhstan_Botai.SG 0.303
  244. gendstat: CHG EEHG 1.085
  245. gendstat: CHG WEHG 0.415
  246. gendstat: CHG WSHG 0.643
  247. gendstat: CHG Onge.DG 0.778
  248. gendstat: CHG Russia_Shamanka_EN.SG -0.164
  249. gendstat: CHG Steppe_Eneolithic 1.189
  250. gendstat: CHG Caucasus_Eneolithic 0.978
  251. gendstat: CHG Kazakhstan_Botai.SG 0.165
  252. gendstat: EEHG WEHG -0.920
  253. gendstat: EEHG WSHG -0.519
  254. gendstat: EEHG Onge.DG -0.374
  255. gendstat: EEHG Russia_Shamanka_EN.SG -1.425
  256. gendstat: EEHG Steppe_Eneolithic -0.103
  257. gendstat: EEHG Caucasus_Eneolithic -0.178
  258. gendstat: EEHG Kazakhstan_Botai.SG -1.192
  259. gendstat: WEHG WSHG 0.305
  260. gendstat: WEHG Onge.DG 0.457
  261. gendstat: WEHG Russia_Shamanka_EN.SG -0.700
  262. gendstat: WEHG Steppe_Eneolithic 0.879
  263. gendstat: WEHG Caucasus_Eneolithic 0.574
  264. gendstat: WEHG Kazakhstan_Botai.SG -0.269
  265. gendstat: WSHG Onge.DG 0.125
  266. gendstat: WSHG Russia_Shamanka_EN.SG -0.890
  267. gendstat: WSHG Steppe_Eneolithic 0.462
  268. gendstat: WSHG Caucasus_Eneolithic 0.261
  269. gendstat: WSHG Kazakhstan_Botai.SG -0.577
  270. gendstat: Onge.DG Russia_Shamanka_EN.SG -1.179
  271. gendstat: Onge.DG Steppe_Eneolithic 0.301
  272. gendstat: Onge.DG Caucasus_Eneolithic 0.162
  273. gendstat: Onge.DG Kazakhstan_Botai.SG -0.662
  274. gendstat: Russia_Shamanka_EN.SG Steppe_Eneolithic 1.455
  275. gendstat: Russia_Shamanka_EN.SG Caucasus_Eneolithic 1.082
  276. gendstat: Russia_Shamanka_EN.SG Kazakhstan_Botai.SG 0.407
  277. gendstat: Steppe_Eneolithic Caucasus_Eneolithic -0.105
  278. gendstat: Steppe_Eneolithic Kazakhstan_Botai.SG -1.099
  279. gendstat: Caucasus_Eneolithic Kazakhstan_Botai.SG -0.750
  280.  
  281. ## end of run
Add Comment
Please, Sign In to add comment
Public Pastes
We use cookies for various purposes including analytics. By continuing to use Pastebin, you agree to our use of cookies as described in the Cookies Policy.  OK, I Understand
Not a member of Pastebin yet?
Sign Up, it unlocks many cool features!