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misnomer001

aligrama centralsaka success

misnomer001
Jan 12th, 2020
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  1. allsnps: YES
  2. ## qpAdm version: 810
  3. seed: 1822001834
  4.  
  5. left pops:
  6. Aligrama2_IA
  7. InPe
  8. Kazakhstan_CentralSaka.SG
  9.  
  10. right pops:
  11. Kazakhstan_Botai.SG
  12. Ganj_Dareh_N
  13. PPN
  14. Anatolia_N
  15. Iberia_MN
  16. Russia_MA1.SG
  17. CHG
  18. Kostenki14.SG
  19. EEHG
  20. WEHG
  21. WSHG
  22. Onge.DG
  23. Russia_Shamanka_EN.SG
  24. Ethiopia_4500BP.SG
  25.  
  26. 0 Aligrama2_IA 3
  27. 1 InPe 10
  28. 2 Kazakhstan_CentralSaka.SG 6
  29. 3 Kazakhstan_Botai.SG 3
  30. 4 Ganj_Dareh_N 7
  31. 5 PPN 8
  32. 6 Anatolia_N 22
  33. 7 Iberia_MN 4
  34. 8 Russia_MA1.SG 1
  35. 9 CHG 2
  36. 10 Kostenki14.SG 1
  37. 11 EEHG 4
  38. 12 WEHG 36
  39. 13 WSHG 3
  40. 14 Onge.DG 2
  41. 15 Russia_Shamanka_EN.SG 10
  42. 16 Ethiopia_4500BP.SG 1
  43. jackknife block size: 0.050
  44. snps: 1150477 indivs: 123
  45. number of blocks for block jackknife: 552
  46. ## ncols: 1150477
  47. coverage: Aligrama2_IA 995603
  48. coverage: InPe 878190
  49. coverage: Kazakhstan_CentralSaka.SG 1117108
  50. coverage: Kazakhstan_Botai.SG 1149870
  51. coverage: Ganj_Dareh_N 1029695
  52. coverage: PPN 835499
  53. coverage: Anatolia_N 1134099
  54. coverage: Iberia_MN 967760
  55. coverage: Russia_MA1.SG 805960
  56. coverage: CHG 1149558
  57. coverage: Kostenki14.SG 1048972
  58. coverage: EEHG 1029995
  59. coverage: WEHG 1141246
  60. coverage: WSHG 858019
  61. coverage: Onge.DG 1120748
  62. coverage: Russia_Shamanka_EN.SG 1149998
  63. coverage: Ethiopia_4500BP.SG 1149598
  64. dof (jackknife): 468.183
  65. numsnps used: 1150477
  66. codimension 1
  67. f4info:
  68. f4rank: 1 dof: 12 chisq: 16.813 tail: 0.156763404 dofdiff: 14 chisqdiff: -16.813 taildiff: 1
  69. B:
  70. scale 1.000
  71. Ganj_Dareh_N 2.084
  72. PPN 1.031
  73. Anatolia_N 1.028
  74. Iberia_MN 0.800
  75. Russia_MA1.SG 0.535
  76. CHG 1.404
  77. Kostenki14.SG 0.819
  78. EEHG 0.188
  79. WEHG 0.294
  80. WSHG 0.328
  81. Onge.DG 0.908
  82. Russia_Shamanka_EN.SG -0.649
  83. Ethiopia_4500BP.SG 1.223
  84. A:
  85. scale 429.109
  86. InPe 0.262
  87. Kazakhstan_CentralSaka.SG -1.390
  88.  
  89.  
  90. full rank
  91. f4info:
  92. f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 12 chisqdiff: 16.813 taildiff: 0.156763404
  93. B:
  94. scale 1.000 1.000
  95. Ganj_Dareh_N 2.085 -0.119
  96. PPN 1.033 0.410
  97. Anatolia_N 1.022 -0.990
  98. Iberia_MN 0.805 1.490
  99. Russia_MA1.SG 0.527 0.714
  100. CHG 1.403 0.256
  101. Kostenki14.SG 0.824 -0.585
  102. EEHG 0.181 0.756
  103. WEHG 0.286 -0.404
  104. WSHG 0.324 1.342
  105. Onge.DG 0.911 -1.596
  106. Russia_Shamanka_EN.SG -0.664 1.486
  107. Ethiopia_4500BP.SG 1.215 -1.189
  108. A:
  109. scale 441.756 6367.450
  110. InPe 0.337 1.176
  111. Kazakhstan_CentralSaka.SG -1.373 0.785
  112.  
  113.  
  114. best coefficients: 0.841 0.159
  115. Jackknife mean: 0.841083795 0.158916205
  116. std. errors: 0.021 0.021
  117.  
  118. error covariance (* 1000000)
  119. 433 -433
  120. -433 433
  121.  
  122.  
  123. summ: Aligrama2_IA 2 0.156763 0.841 0.159 433 -433 433
  124.  
  125. fixed pat wt dof chisq tail prob
  126. 00 0 12 16.813 0.156763 0.841 0.159
  127. 01 1 13 68.333 1.62469e-09 1.000 -0.000
  128. 10 1 13 1107.819 0 0.000 1.000
  129. best pat: 00 0.156763 - -
  130. best pat: 01 1.62469e-09 chi(nested): 51.520 p-value for nested model: 7.08697e-13
  131.  
  132. coeffs: 0.841 0.159
  133.  
  134. ## dscore:: f_4(Base, Fit, Rbase, right2)
  135. ## genstat:: f_4(Base, Fit, right1, right2)
  136.  
  137. details: InPe Ganj_Dareh_N 0.001581 6.262245
  138. details: Kazakhstan_CentralSaka.SG Ganj_Dareh_N -0.006506 -22.576564
  139. dscore: Ganj_Dareh_N f4: 0.000298 Z: 1.252062
  140.  
  141. details: InPe PPN 0.000889 3.511881
  142. details: Kazakhstan_CentralSaka.SG PPN -0.003179 -11.442649
  143. dscore: PPN f4: 0.000244 Z: 1.028115
  144.  
  145. details: InPe Anatolia_N 0.000677 3.181484
  146. details: Kazakhstan_CentralSaka.SG Anatolia_N -0.003267 -13.375527
  147. dscore: Anatolia_N f4: 0.000051 Z: 0.254567
  148.  
  149. details: InPe Iberia_MN 0.000922 3.922882
  150. details: Kazakhstan_CentralSaka.SG Iberia_MN -0.002331 -8.673182
  151. dscore: Iberia_MN f4: 0.000406 Z: 1.824674
  152.  
  153. details: InPe Russia_MA1.SG 0.000611 2.403229
  154. details: Kazakhstan_CentralSaka.SG Russia_MA1.SG -0.001479 -5.448694
  155. dscore: Russia_MA1.SG f4: 0.000279 Z: 1.172164
  156.  
  157. details: InPe CHG 0.001149 4.281221
  158. details: Kazakhstan_CentralSaka.SG CHG -0.004334 -13.672072
  159. dscore: CHG f4: 0.000280 Z: 1.096529
  160.  
  161. details: InPe Kostenki14.SG 0.000493 1.776804
  162. details: Kazakhstan_CentralSaka.SG Kostenki14.SG -0.002706 -8.393288
  163. dscore: Kostenki14.SG f4: -0.000014 Z: -0.053840
  164.  
  165. details: InPe EEHG 0.000350 1.642227
  166. details: Kazakhstan_CentralSaka.SG EEHG -0.000443 -1.772776
  167. dscore: EEHG f4: 0.000224 Z: 1.115836
  168.  
  169. details: InPe WEHG 0.000222 1.138628
  170. details: Kazakhstan_CentralSaka.SG WEHG -0.000925 -3.932184
  171. dscore: WEHG f4: 0.000040 Z: 0.219173
  172.  
  173. details: InPe WSHG 0.000595 2.716409
  174. details: Kazakhstan_CentralSaka.SG WSHG -0.000781 -3.456311
  175. dscore: WSHG f4: 0.000377 Z: 1.837242
  176.  
  177. details: InPe Onge.DG 0.000340 1.326724
  178. details: Kazakhstan_CentralSaka.SG Onge.DG -0.003102 -9.889303
  179. dscore: Onge.DG f4: -0.000206 Z: -0.841666
  180.  
  181. details: InPe Russia_Shamanka_EN.SG -0.000231 -1.071177
  182. details: Kazakhstan_CentralSaka.SG Russia_Shamanka_EN.SG 0.002219 8.126701
  183. dscore: Russia_Shamanka_EN.SG f4: 0.000157 Z: 0.770467
  184.  
  185. details: InPe Ethiopia_4500BP.SG 0.000644 2.338258
  186. details: Kazakhstan_CentralSaka.SG Ethiopia_4500BP.SG -0.004018 -13.043242
  187. dscore: Ethiopia_4500BP.SG f4: -0.000096 Z: -0.366456
  188.  
  189. gendstat: Kazakhstan_Botai.SG Ganj_Dareh_N 1.252
  190. gendstat: Kazakhstan_Botai.SG PPN 1.028
  191. gendstat: Kazakhstan_Botai.SG Anatolia_N 0.255
  192. gendstat: Kazakhstan_Botai.SG Iberia_MN 1.825
  193. gendstat: Kazakhstan_Botai.SG Russia_MA1.SG 1.172
  194. gendstat: Kazakhstan_Botai.SG CHG 1.097
  195. gendstat: Kazakhstan_Botai.SG Kostenki14.SG -0.054
  196. gendstat: Kazakhstan_Botai.SG EEHG 1.116
  197. gendstat: Kazakhstan_Botai.SG WEHG 0.219
  198. gendstat: Kazakhstan_Botai.SG WSHG 1.837
  199. gendstat: Kazakhstan_Botai.SG Onge.DG -0.842
  200. gendstat: Kazakhstan_Botai.SG Russia_Shamanka_EN.SG 0.770
  201. gendstat: Kazakhstan_Botai.SG Ethiopia_4500BP.SG -0.366
  202. gendstat: Ganj_Dareh_N PPN -0.222
  203. gendstat: Ganj_Dareh_N Anatolia_N -1.239
  204. gendstat: Ganj_Dareh_N Iberia_MN 0.480
  205. gendstat: Ganj_Dareh_N Russia_MA1.SG -0.061
  206. gendstat: Ganj_Dareh_N CHG -0.079
  207. gendstat: Ganj_Dareh_N Kostenki14.SG -1.088
  208. gendstat: Ganj_Dareh_N EEHG -0.274
  209. gendstat: Ganj_Dareh_N WEHG -1.131
  210. gendstat: Ganj_Dareh_N WSHG 0.295
  211. gendstat: Ganj_Dareh_N Onge.DG -1.856
  212. gendstat: Ganj_Dareh_N Russia_Shamanka_EN.SG -0.563
  213. gendstat: Ganj_Dareh_N Ethiopia_4500BP.SG -1.439
  214. gendstat: PPN Anatolia_N -1.089
  215. gendstat: PPN Iberia_MN 0.744
  216. gendstat: PPN Russia_MA1.SG 0.116
  217. gendstat: PPN CHG 0.142
  218. gendstat: PPN Kostenki14.SG -0.884
  219. gendstat: PPN EEHG -0.076
  220. gendstat: PPN WEHG -0.930
  221. gendstat: PPN WSHG 0.496
  222. gendstat: PPN Onge.DG -1.673
  223. gendstat: PPN Russia_Shamanka_EN.SG -0.359
  224. gendstat: PPN Ethiopia_4500BP.SG -1.278
  225. gendstat: Anatolia_N Iberia_MN 2.286
  226. gendstat: Anatolia_N Russia_MA1.SG 0.852
  227. gendstat: Anatolia_N CHG 1.083
  228. gendstat: Anatolia_N Kostenki14.SG -0.257
  229. gendstat: Anatolia_N EEHG 0.791
  230. gendstat: Anatolia_N WEHG -0.073
  231. gendstat: Anatolia_N WSHG 1.414
  232. gendstat: Anatolia_N Onge.DG -1.091
  233. gendstat: Anatolia_N Russia_Shamanka_EN.SG 0.533
  234. gendstat: Anatolia_N Ethiopia_4500BP.SG -0.608
  235. gendstat: Iberia_MN Russia_MA1.SG -0.460
  236. gendstat: Iberia_MN CHG -0.518
  237. gendstat: Iberia_MN Kostenki14.SG -1.521
  238. gendstat: Iberia_MN EEHG -0.750
  239. gendstat: Iberia_MN WEHG -2.073
  240. gendstat: Iberia_MN WSHG -0.117
  241. gendstat: Iberia_MN Onge.DG -2.306
  242. gendstat: Iberia_MN Russia_Shamanka_EN.SG -1.083
  243. gendstat: Iberia_MN Ethiopia_4500BP.SG -1.928
  244. gendstat: Russia_MA1.SG CHG 0.001
  245. gendstat: Russia_MA1.SG Kostenki14.SG -0.953
  246. gendstat: Russia_MA1.SG EEHG -0.200
  247. gendstat: Russia_MA1.SG WEHG -0.957
  248. gendstat: Russia_MA1.SG WSHG 0.356
  249. gendstat: Russia_MA1.SG Onge.DG -1.593
  250. gendstat: Russia_MA1.SG Russia_Shamanka_EN.SG -0.445
  251. gendstat: Russia_MA1.SG Ethiopia_4500BP.SG -1.224
  252. gendstat: CHG Kostenki14.SG -0.932
  253. gendstat: CHG EEHG -0.207
  254. gendstat: CHG WEHG -0.976
  255. gendstat: CHG WSHG 0.344
  256. gendstat: CHG Onge.DG -1.747
  257. gendstat: CHG Russia_Shamanka_EN.SG -0.456
  258. gendstat: CHG Ethiopia_4500BP.SG -1.247
  259. gendstat: Kostenki14.SG EEHG 0.811
  260. gendstat: Kostenki14.SG WEHG 0.214
  261. gendstat: Kostenki14.SG WSHG 1.323
  262. gendstat: Kostenki14.SG Onge.DG -0.648
  263. gendstat: Kostenki14.SG Russia_Shamanka_EN.SG 0.641
  264. gendstat: Kostenki14.SG Ethiopia_4500BP.SG -0.269
  265. gendstat: EEHG WEHG -0.914
  266. gendstat: EEHG WSHG 0.661
  267. gendstat: EEHG Onge.DG -1.546
  268. gendstat: EEHG Russia_Shamanka_EN.SG -0.277
  269. gendstat: EEHG Ethiopia_4500BP.SG -1.128
  270. gendstat: WEHG WSHG 1.538
  271. gendstat: WEHG Onge.DG -0.999
  272. gendstat: WEHG Russia_Shamanka_EN.SG 0.603
  273. gendstat: WEHG Ethiopia_4500BP.SG -0.538
  274. gendstat: WSHG Onge.DG -2.103
  275. gendstat: WSHG Russia_Shamanka_EN.SG -0.938
  276. gendstat: WSHG Ethiopia_4500BP.SG -1.584
  277. gendstat: Onge.DG Russia_Shamanka_EN.SG 1.637
  278. gendstat: Onge.DG Ethiopia_4500BP.SG 0.410
  279. gendstat: Russia_Shamanka_EN.SG Ethiopia_4500BP.SG -0.999
  280.  
  281. ## end of run
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