API tools faq
paste
misnomer001

namazga da380

misnomer001
Jul 31st, 2022
137
0
Never
Add comment
Not a member of Pastebin yet? Sign Up, it unlocks many cool features!
text 16.72 KB | None | 0 0
raw download clone embed print report
  1. qpAdm: parameter file: parqpadm
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. S1: IndiaN
  5. indivname: IndiaN.ind
  6. snpname: IndiaN.snp
  7. genotypename: IndiaN.geno
  8. popleft: left
  9. popright: right
  10. details: YES
  11. allsnps: YES
  12. inbreed: NO
  13. oldallsnps: NO
  14. ## qpAdm version: 1520
  15. seed: 1633066354
  16. inbreed set NO
  17. inbreed set NO
  18. tmp: /tmp/fsx.2704
  19.  
  20. left pops:
  21. DA380
  22. Iran_GanjDareh_N
  23. CHG
  24. WSHG
  25.  
  26. right pops:
  27. Altai_Neanderthal.DG
  28. Mbuti.DG
  29. Russia_Ust_Ishim.DG
  30. Sunghir
  31. Morocco_Iberomaurusian
  32. Russia_Yana_UP.SG
  33. Turkey_Epipaleolithic
  34. Laos_Hoabinhian.SG
  35. China_Paleo
  36. Czech_Vestonice16
  37. ONG.SG
  38. Turkey_Boncuklu_N
  39. EHG
  40. Azerbaijan_Caucasus_lowlands_LN
  41. Iran_ShahrISokhta_BA2_published
  42. Russia_Khvalynsk_Eneolithic
  43.  
  44. codimension 1
  45. f4info:
  46. f4rank: 2 dof: 13 chisq: 14.515 tail: 0.338605934 dofdiff: 15 chisqdiff: -14.515 taildiff: 1
  47. B:
  48. scale 1.000 1.000
  49. Mbuti.DG -0.228 0.137
  50. Russia_Ust_Ishim.DG 0.328 0.209
  51. Sunghir 0.540 1.044
  52. Morocco_Iberomaurusian 0.000 0.721
  53. Russia_Yana_UP.SG 0.877 0.475
  54. Turkey_Epipaleolithic -0.086 1.768
  55. Laos_Hoabinhian.SG 0.518 -0.658
  56. China_Paleo 0.689 -0.824
  57. Czech_Vestonice16 0.752 0.343
  58. ONG.SG 0.483 -0.018
  59. Turkey_Boncuklu_N -0.193 2.236
  60. EHG 2.727 -0.750
  61. Azerbaijan_Caucasus_lowlands_LN -0.530 1.538
  62. Iran_ShahrISokhta_BA2_published -0.098 -0.852
  63. Russia_Khvalynsk_Eneolithic 2.114 -0.303
  64. A:
  65. scale 106.885 497.627
  66. Iran_GanjDareh_N -0.450 -1.333
  67. CHG -0.045 0.855
  68. WSHG 1.672 -0.701
  69.  
  70.  
  71. full rank
  72. f4info:
  73. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 13 chisqdiff: 14.515 taildiff: 0.338605934
  74. B:
  75. scale 230.309 333.159 60.646
  76. Mbuti.DG -0.028 0.043 -0.236
  77. Russia_Ust_Ishim.DG -0.290 0.618 0.382
  78. Sunghir -1.172 0.885 0.473
  79. Morocco_Iberomaurusian -0.105 1.183 0.059
  80. Russia_Yana_UP.SG -1.450 -0.034 0.761
  81. Turkey_Epipaleolithic -0.849 1.713 -0.135
  82. Laos_Hoabinhian.SG -1.057 -1.641 0.351
  83. China_Paleo 0.117 0.205 0.845
  84. Czech_Vestonice16 -0.612 1.034 0.801
  85. ONG.SG -0.713 -0.201 0.445
  86. Turkey_Boncuklu_N -1.106 1.745 -0.301
  87. EHG -1.987 -0.189 2.738
  88. Azerbaijan_Caucasus_lowlands_LN -0.232 1.604 -0.530
  89. Iran_ShahrISokhta_BA2_published 0.726 0.011 0.047
  90. Russia_Khvalynsk_Eneolithic -1.715 -0.008 2.104
  91. A:
  92. scale 1.732 1.732 1.732
  93. Iran_GanjDareh_N 1.732 0.000 0.000
  94. CHG 0.000 1.732 0.000
  95. WSHG 0.000 0.000 1.732
  96.  
  97.  
  98. best coefficients: 0.319 0.580 0.101
  99. totmean: 0.319 0.580 0.101
  100. boot mean: 0.318 0.581 0.102
  101. std. errors: 0.104 0.110 0.023
  102.  
  103. error covariance (* 1,000,000)
  104. 10900 -11201 301
  105. -11201 12014 -813
  106. 301 -813 512
  107.  
  108.  
  109. summ: DA380 3 0.338606 0.318 0.581 0.102 10900 -11201 301 12014 -813 ...
  110. 512
  111.  
  112. fixed pat wt dof chisq tail prob
  113. 000 0 13 14.515 0.338606 0.319 0.580 0.101
  114. 001 1 14 33.688 0.00229051 0.245 0.755 0.000
  115. 010 1 14 47.543 1.56422e-05 0.863 0.000 0.137
  116. 100 1 14 24.829 0.0362956 0.000 0.906 0.094
  117. 011 2 15 84.949 8.59527e-12 1.000 0.000 0.000
  118. 101 2 15 39.524 0.00053489 0.000 1.000 0.000
  119. 110 2 15 1143.604 0 0.000 0.000 1.000
  120. best pat: 000 0.338606 - -
  121. best pat: 100 0.0362956 chi(nested): 10.314 p-value for nested model: 0.00132032
  122. best pat: 101 0.00053489 chi(nested): 14.695 p-value for nested model: 0.000126372
  123.  
  124. coeffs: 0.319 0.580 0.101
  125.  
  126. ## dscore:: f_4(Base, Fit, Rbase, right2)
  127. ## genstat:: f_4(Base, Fit, right1, right2)
  128.  
  129. details: Iran_GanjDareh_N Mbuti.DG -0.000121 -0.087394
  130. details: CHG Mbuti.DG 0.000130 0.086160
  131. details: WSHG Mbuti.DG -0.003899 -2.449425
  132. dscore: Mbuti.DG f4: -0.000359 Z: -0.260661
  133.  
  134. details: Iran_GanjDareh_N Russia_Ust_Ishim.DG -0.001259 -0.621383
  135. details: CHG Russia_Ust_Ishim.DG 0.001855 0.863986
  136. details: WSHG Russia_Ust_Ishim.DG 0.006303 2.634271
  137. dscore: Russia_Ust_Ishim.DG f4: 0.001314 Z: 0.678094
  138.  
  139. details: Iran_GanjDareh_N Sunghir -0.005088 -2.599590
  140. details: CHG Sunghir 0.002656 1.291395
  141. details: WSHG Sunghir 0.007793 3.513445
  142. dscore: Sunghir f4: 0.000709 Z: 0.380019
  143.  
  144. details: Iran_GanjDareh_N Morocco_Iberomaurusian -0.000457 -0.243014
  145. details: CHG Morocco_Iberomaurusian 0.003550 1.764665
  146. details: WSHG Morocco_Iberomaurusian 0.000979 0.445760
  147. dscore: Morocco_Iberomaurusian f4: 0.002012 Z: 1.096152
  148.  
  149. details: Iran_GanjDareh_N Russia_Yana_UP.SG -0.006297 -3.174551
  150. details: CHG Russia_Yana_UP.SG -0.000101 -0.045369
  151. details: WSHG Russia_Yana_UP.SG 0.012554 5.397098
  152. dscore: Russia_Yana_UP.SG f4: -0.000792 Z: -0.397448
  153.  
  154. details: Iran_GanjDareh_N Turkey_Epipaleolithic -0.003688 -1.527685
  155. details: CHG Turkey_Epipaleolithic 0.005140 1.988350
  156. details: WSHG Turkey_Epipaleolithic -0.002219 -0.811518
  157. dscore: Turkey_Epipaleolithic f4: 0.001580 Z: 0.671460
  158.  
  159. details: Iran_GanjDareh_N Laos_Hoabinhian.SG -0.004590 -1.806138
  160. details: CHG Laos_Hoabinhian.SG -0.004927 -1.819588
  161. details: WSHG Laos_Hoabinhian.SG 0.005782 1.991562
  162. dscore: Laos_Hoabinhian.SG f4: -0.003733 Z: -1.495053
  163.  
  164. details: Iran_GanjDareh_N China_Paleo 0.000509 0.258354
  165. details: CHG China_Paleo 0.000617 0.278496
  166. details: WSHG China_Paleo 0.013928 5.878379
  167. dscore: China_Paleo f4: 0.001932 Z: 0.973308
  168.  
  169. details: Iran_GanjDareh_N Czech_Vestonice16 -0.002657 -1.082904
  170. details: CHG Czech_Vestonice16 0.003104 1.162265
  171. details: WSHG Czech_Vestonice16 0.013205 4.788146
  172. dscore: Czech_Vestonice16 f4: 0.002293 Z: 0.952018
  173.  
  174. details: Iran_GanjDareh_N ONG.SG -0.003094 -1.579855
  175. details: CHG ONG.SG -0.000603 -0.278268
  176. details: WSHG ONG.SG 0.007346 3.188703
  177. dscore: ONG.SG f4: -0.000591 Z: -0.300616
  178.  
  179. details: Iran_GanjDareh_N Turkey_Boncuklu_N -0.004801 -2.526932
  180. details: CHG Turkey_Boncuklu_N 0.005238 2.541213
  181. details: WSHG Turkey_Boncuklu_N -0.004955 -2.274714
  182. dscore: Turkey_Boncuklu_N f4: 0.001005 Z: 0.539797
  183.  
  184. details: Iran_GanjDareh_N EHG -0.008627 -4.124777
  185. details: CHG EHG -0.000568 -0.260409
  186. details: WSHG EHG 0.045153 18.526391
  187. dscore: EHG f4: 0.001502 Z: 0.747188
  188.  
  189. details: Iran_GanjDareh_N Azerbaijan_Caucasus_lowlands_LN -0.001006 -0.511243
  190. details: CHG Azerbaijan_Caucasus_lowlands_LN 0.004815 2.189553
  191. details: WSHG Azerbaijan_Caucasus_lowlands_LN -0.008737 -3.841846
  192. dscore: Azerbaijan_Caucasus_lowlands_LN f4: 0.001585 Z: 0.808277
  193.  
  194. details: Iran_GanjDareh_N Iran_ShahrISokhta_BA2_published 0.003154 1.667685
  195. details: CHG Iran_ShahrISokhta_BA2_published 0.000035 0.017429
  196. details: WSHG Iran_ShahrISokhta_BA2_published 0.000783 0.362247
  197. dscore: Iran_ShahrISokhta_BA2_published f4: 0.001104 Z: 0.607837
  198.  
  199. details: Iran_GanjDareh_N Russia_Khvalynsk_Eneolithic -0.007448 -3.410844
  200. details: CHG Russia_Khvalynsk_Eneolithic -0.000025 -0.010493
  201. details: WSHG Russia_Khvalynsk_Eneolithic 0.034688 13.462989
  202. dscore: Russia_Khvalynsk_Eneolithic f4: 0.001131 Z: 0.519169
  203.  
  204. gendstat: Altai_Neanderthal.DG Mbuti.DG -0.261
  205. gendstat: Altai_Neanderthal.DG Russia_Ust_Ishim.DG 0.678
  206. gendstat: Altai_Neanderthal.DG Sunghir 0.380
  207. gendstat: Altai_Neanderthal.DG Morocco_Iberomaurusian 1.096
  208. gendstat: Altai_Neanderthal.DG Russia_Yana_UP.SG -0.397
  209. gendstat: Altai_Neanderthal.DG Turkey_Epipaleolithic 0.671
  210. gendstat: Altai_Neanderthal.DG Laos_Hoabinhian.SG -1.495
  211. gendstat: Altai_Neanderthal.DG China_Paleo 0.973
  212. gendstat: Altai_Neanderthal.DG Czech_Vestonice16 0.952
  213. gendstat: Altai_Neanderthal.DG ONG.SG -0.301
  214. gendstat: Altai_Neanderthal.DG Turkey_Boncuklu_N 0.540
  215. gendstat: Altai_Neanderthal.DG EHG 0.747
  216. gendstat: Altai_Neanderthal.DG Azerbaijan_Caucasus_lowlands_LN 0.808
  217. gendstat: Altai_Neanderthal.DG Iran_ShahrISokhta_BA2_published 0.608
  218. gendstat: Altai_Neanderthal.DG Russia_Khvalynsk_Eneolithic 0.519
  219. gendstat: Mbuti.DG Russia_Ust_Ishim.DG 1.005
  220. gendstat: Mbuti.DG Sunghir 0.740
  221. gendstat: Mbuti.DG Morocco_Iberomaurusian 1.649
  222. gendstat: Mbuti.DG Russia_Yana_UP.SG -0.273
  223. gendstat: Mbuti.DG Turkey_Epipaleolithic 0.970
  224. gendstat: Mbuti.DG Laos_Hoabinhian.SG -1.505
  225. gendstat: Mbuti.DG China_Paleo 1.386
  226. gendstat: Mbuti.DG Czech_Vestonice16 1.245
  227. gendstat: Mbuti.DG ONG.SG -0.153
  228. gendstat: Mbuti.DG Turkey_Boncuklu_N 0.901
  229. gendstat: Mbuti.DG EHG 1.131
  230. gendstat: Mbuti.DG Azerbaijan_Caucasus_lowlands_LN 1.206
  231. gendstat: Mbuti.DG Iran_ShahrISokhta_BA2_published 0.998
  232. gendstat: Mbuti.DG Russia_Khvalynsk_Eneolithic 0.773
  233. gendstat: Russia_Ust_Ishim.DG Sunghir -0.358
  234. gendstat: Russia_Ust_Ishim.DG Morocco_Iberomaurusian 0.405
  235. gendstat: Russia_Ust_Ishim.DG Russia_Yana_UP.SG -1.171
  236. gendstat: Russia_Ust_Ishim.DG Turkey_Epipaleolithic 0.124
  237. gendstat: Russia_Ust_Ishim.DG Laos_Hoabinhian.SG -2.144
  238. gendstat: Russia_Ust_Ishim.DG China_Paleo 0.344
  239. gendstat: Russia_Ust_Ishim.DG Czech_Vestonice16 0.428
  240. gendstat: Russia_Ust_Ishim.DG ONG.SG -1.148
  241. gendstat: Russia_Ust_Ishim.DG Turkey_Boncuklu_N -0.175
  242. gendstat: Russia_Ust_Ishim.DG EHG 0.097
  243. gendstat: Russia_Ust_Ishim.DG Azerbaijan_Caucasus_lowlands_LN 0.141
  244. gendstat: Russia_Ust_Ishim.DG Iran_ShahrISokhta_BA2_published -0.122
  245. gendstat: Russia_Ust_Ishim.DG Russia_Khvalynsk_Eneolithic -0.085
  246. gendstat: Sunghir Morocco_Iberomaurusian 0.827
  247. gendstat: Sunghir Russia_Yana_UP.SG -0.971
  248. gendstat: Sunghir Turkey_Epipaleolithic 0.455
  249. gendstat: Sunghir Laos_Hoabinhian.SG -1.976
  250. gendstat: Sunghir China_Paleo 0.758
  251. gendstat: Sunghir Czech_Vestonice16 0.827
  252. gendstat: Sunghir ONG.SG -0.868
  253. gendstat: Sunghir Turkey_Boncuklu_N 0.204
  254. gendstat: Sunghir EHG 0.510
  255. gendstat: Sunghir Azerbaijan_Caucasus_lowlands_LN 0.532
  256. gendstat: Sunghir Iran_ShahrISokhta_BA2_published 0.275
  257. gendstat: Sunghir Russia_Khvalynsk_Eneolithic 0.238
  258. gendstat: Morocco_Iberomaurusian Russia_Yana_UP.SG -1.668
  259. gendstat: Morocco_Iberomaurusian Turkey_Epipaleolithic -0.211
  260. gendstat: Morocco_Iberomaurusian Laos_Hoabinhian.SG -2.461
  261. gendstat: Morocco_Iberomaurusian China_Paleo -0.045
  262. gendstat: Morocco_Iberomaurusian Czech_Vestonice16 0.128
  263. gendstat: Morocco_Iberomaurusian ONG.SG -1.643
  264. gendstat: Morocco_Iberomaurusian Turkey_Boncuklu_N -0.648
  265. gendstat: Morocco_Iberomaurusian EHG -0.290
  266. gendstat: Morocco_Iberomaurusian Azerbaijan_Caucasus_lowlands_LN -0.246
  267. gendstat: Morocco_Iberomaurusian Iran_ShahrISokhta_BA2_published -0.553
  268. gendstat: Morocco_Iberomaurusian Russia_Khvalynsk_Eneolithic -0.465
  269. gendstat: Russia_Yana_UP.SG Turkey_Epipaleolithic 1.179
  270. gendstat: Russia_Yana_UP.SG Laos_Hoabinhian.SG -1.294
  271. gendstat: Russia_Yana_UP.SG China_Paleo 1.590
  272. gendstat: Russia_Yana_UP.SG Czech_Vestonice16 1.462
  273. gendstat: Russia_Yana_UP.SG ONG.SG 0.124
  274. gendstat: Russia_Yana_UP.SG Turkey_Boncuklu_N 1.130
  275. gendstat: Russia_Yana_UP.SG EHG 1.366
  276. gendstat: Russia_Yana_UP.SG Azerbaijan_Caucasus_lowlands_LN 1.343
  277. gendstat: Russia_Yana_UP.SG Iran_ShahrISokhta_BA2_published 1.173
  278. gendstat: Russia_Yana_UP.SG Russia_Khvalynsk_Eneolithic 1.013
  279. gendstat: Turkey_Epipaleolithic Laos_Hoabinhian.SG -2.014
  280. gendstat: Turkey_Epipaleolithic China_Paleo 0.167
  281. gendstat: Turkey_Epipaleolithic Czech_Vestonice16 0.292
  282. gendstat: Turkey_Epipaleolithic ONG.SG -1.052
  283. gendstat: Turkey_Epipaleolithic Turkey_Boncuklu_N -0.323
  284. gendstat: Turkey_Epipaleolithic EHG -0.039
  285. gendstat: Turkey_Epipaleolithic Azerbaijan_Caucasus_lowlands_LN 0.002
  286. gendstat: Turkey_Epipaleolithic Iran_ShahrISokhta_BA2_published -0.236
  287. gendstat: Turkey_Epipaleolithic Russia_Khvalynsk_Eneolithic -0.201
  288. gendstat: Laos_Hoabinhian.SG China_Paleo 2.536
  289. gendstat: Laos_Hoabinhian.SG Czech_Vestonice16 2.222
  290. gendstat: Laos_Hoabinhian.SG ONG.SG 1.520
  291. gendstat: Laos_Hoabinhian.SG Turkey_Boncuklu_N 2.068
  292. gendstat: Laos_Hoabinhian.SG EHG 2.158
  293. gendstat: Laos_Hoabinhian.SG Azerbaijan_Caucasus_lowlands_LN 2.257
  294. gendstat: Laos_Hoabinhian.SG Iran_ShahrISokhta_BA2_published 2.209
  295. gendstat: Laos_Hoabinhian.SG Russia_Khvalynsk_Eneolithic 1.890
  296. gendstat: China_Paleo Czech_Vestonice16 0.160
  297. gendstat: China_Paleo ONG.SG -1.628
  298. gendstat: China_Paleo Turkey_Boncuklu_N -0.545
  299. gendstat: China_Paleo EHG -0.244
  300. gendstat: China_Paleo Azerbaijan_Caucasus_lowlands_LN -0.202
  301. gendstat: China_Paleo Iran_ShahrISokhta_BA2_published -0.510
  302. gendstat: China_Paleo Russia_Khvalynsk_Eneolithic -0.402
  303. gendstat: Czech_Vestonice16 ONG.SG -1.324
  304. gendstat: Czech_Vestonice16 Turkey_Boncuklu_N -0.637
  305. gendstat: Czech_Vestonice16 EHG -0.363
  306. gendstat: Czech_Vestonice16 Azerbaijan_Caucasus_lowlands_LN -0.314
  307. gendstat: Czech_Vestonice16 Iran_ShahrISokhta_BA2_published -0.568
  308. gendstat: Czech_Vestonice16 Russia_Khvalynsk_Eneolithic -0.480
  309. gendstat: ONG.SG Turkey_Boncuklu_N 1.002
  310. gendstat: ONG.SG EHG 1.186
  311. gendstat: ONG.SG Azerbaijan_Caucasus_lowlands_LN 1.279
  312. gendstat: ONG.SG Iran_ShahrISokhta_BA2_published 1.143
  313. gendstat: ONG.SG Russia_Khvalynsk_Eneolithic 0.861
  314. gendstat: Turkey_Boncuklu_N EHG 0.316
  315. gendstat: Turkey_Boncuklu_N Azerbaijan_Caucasus_lowlands_LN 0.389
  316. gendstat: Turkey_Boncuklu_N Iran_ShahrISokhta_BA2_published 0.065
  317. gendstat: Turkey_Boncuklu_N Russia_Khvalynsk_Eneolithic 0.072
  318. gendstat: EHG Azerbaijan_Caucasus_lowlands_LN 0.048
  319. gendstat: EHG Iran_ShahrISokhta_BA2_published -0.237
  320. gendstat: EHG Russia_Khvalynsk_Eneolithic -0.212
  321. gendstat: Azerbaijan_Caucasus_lowlands_LN Iran_ShahrISokhta_BA2_published -0.309
  322. gendstat: Azerbaijan_Caucasus_lowlands_LN Russia_Khvalynsk_Eneolithic -0.237
  323. gendstat: Iran_ShahrISokhta_BA2_published Russia_Khvalynsk_Eneolithic 0.014
  324.  
  325. removing /tmp/fsx.2704
  326. ##end of qpAdm: 14.258 seconds cpu 1.278 Mbytes in use
  327.  
Advertisement
Add Comment
Please, Sign In to add comment
Public Pastes
We use cookies for various purposes including analytics. By continuing to use Pastebin, you agree to our use of cookies as described in the Cookies Policy.  OK, I Understand
Not a member of Pastebin yet?
Sign Up, it unlocks many cool features!