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- RNA3 = {
- "AAA": "Lys",
- "AAC": "Asn",
- "AAG": "Lys",
- "AAU": "Asn",
- "ACA": "Thr",
- "ACC": "Thr",
- "ACG": "Thr",
- "ACU": "Thr",
- "AGA": "Arg",
- "AGC": "Ser",
- "AGG": "Arg",
- "AGU": "Ser",
- "AUA": "Lle",
- "AUC": "Lle",
- "AUG": "Mel",
- "AUU": "Lle",
- "CAA": "Gln",
- "CAC": "His",
- "CAG": "Gln",
- "CAU": "His",
- "CCA": "Pro",
- "CCC": "Pro",
- "CCG": "Pro",
- "CCU": "Pro",
- "CGA": "Arg",
- "CGC": "Arg",
- "CGG": "Arg",
- "CGU": "Arg",
- "CUA": "Leu",
- "CUC": "Leu",
- "CUG": "Leu",
- "CUU": "Leu",
- "GAA": "Glu",
- "GAC": "Asp",
- "GAG": "Glu",
- "GAU": "Asp",
- "GCA": "Ala",
- "GCC": "Ala",
- "GCG": "Ala",
- "GCU": "Ala",
- "GGA": "Gly",
- "GGC": "Gly",
- "GGG": "Gly",
- "GGU": "Gly",
- "GUA": "Val",
- "GUC": "Val",
- "GUG": "Val",
- "GUU": "Val",
- "UAA": "Stop",
- "UAC": "Tyr",
- "UAG": "Stop",
- "UAU": "Tyr",
- "UCA": "Ser",
- "UCC": "Ser",
- "UCG": "Ser",
- "UCU": "Ser",
- "UGA": "Stop",
- "UGC": "Cys",
- "UGG": "Trp",
- "UGU": "Cys",
- "UUA": "Leu",
- "UUC": "Phe",
- "UUG": "Leu",
- "UUU": "Phe",
- }
- AMINOACID_CHEM = {
- "Ala": "CH3-CH(NH2)-COOH",
- "Arg": "HN=C(NH2)-NH-(CH2)3-CH(NH2)-COOH",
- "Asn": "H2N-CO-CH2-CH(NH2)-COOH",
- "Asp": "HOOC-CH2-CH(NH2)-COOH",
- "Cys": "HS-CH2-CH(NH2)-COOH",
- "Gln": "H2N-CO-(CH2)2-CH(NH2)-COOH",
- "Glu": "HOOC-(CH2)2-CH(NH2)-COOH",
- "Gly": "NH2-CH2-COOH",
- "His": "NH-CH=N-CH=C-CH2-CH(NH2)-COOH",
- "Lle": "CH3-CH2-CH(CH3)-CH(NH2)-COOH",
- "Leu": "(CH3)2-CH-CH2-CH(NH2)-COOH",
- "Lys": "H2N-(CH2)4-CH(NH2)-COOH",
- "Met": "CH3-S-(CH2)2-CH(NH2)-COOH",
- "Phe": "Ph-CH2-CH(NH2)-COOH",
- "Pro": "NH-(CH2)3-CH-COOH",
- "Ser": "HO-CH2-CH(NH2)-COOH",
- "Thr": "CH3-CH(OH)-CH(NH2)-COOH",
- "Trp": "Ph-NH-CH=C-CH2-CH(NH2)-COOH",
- "Tyr": "HO-Ph-CH2-CH(NH2)-COOH",
- "Val": "(CH3)2-CH-CH(NH2)-COOH"
- }
- RNA_CONVERSION = {
- "A": "A",
- "C": "C",
- "G": "G",
- "T": "U"
- }
- def DNAtoRNA(DNA):
- RNA = ""
- for c in DNA:
- RNA += RNA_CONVERSION[c]
- return RNA
- def RNAtoAminoAcid(RNA):
- amino = ""
- i = 0;
- while (i <= len(RNA)-1):
- next3 = RNA[i:3+i];
- if (len(next3) != 3):
- break;
- if (RNA3[next3] == "Stop"):
- break;
- amino += RNA3[next3];
- i+=3;
- return amino;
- def AminoAcidtoChem(AMINO):
- chem = ""
- i = 0;
- while (i <= len(AMINO)-1):
- next3 = AMINO[i:3+i];
- if (len(next3) != 3):
- break;
- if (AMINOACID_CHEM[next3] == "Stop"):
- break;
- chem += AMINOACID_CHEM[next3] + " + ";
- i+=3;
- return chem[:-3];
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