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- lgg_clin <- GDCquery_clinic(project = "TCGA-LGG", type = "Clinical")
- lgg_clin <- GDCquery_clinic(project = "TCGA-LGG", type = "Clinical")
- clinical <- plyr::rbind.fill(gbm_clin,lgg_clin)
- head(clinical)
- query <- GDCquery(project = "TCGA-GBM"
- ,data.category = "Clinical"
- ,barcode = c("TCGA-08-0516"
- ,"TCGA-02-0317"
- )
- )
- GDCdownload(query)
- clinical <- GDCprepare_clinic(query, clinical.info = "patient")
- head(clinical)
- Error in move(i, file.path(path, i)) :
- I could not find the file: c9cdbc76-105d-429b-9fce-f000819716f9
- clinical <- GDCprepare_clinic(query, clinical.info = "patient")
- Error in GDCprepare_clinic(query, clinical.info = "patient") :
- I couldn't find all the files from the query.Please check directory parameter right
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