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Nov 12th, 2018
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  1. lgg_clin <- GDCquery_clinic(project = "TCGA-LGG", type = "Clinical")
  2. lgg_clin <- GDCquery_clinic(project = "TCGA-LGG", type = "Clinical")
  3. clinical <- plyr::rbind.fill(gbm_clin,lgg_clin)
  4. head(clinical)
  5.  
  6. query <- GDCquery(project = "TCGA-GBM"
  7. ,data.category = "Clinical"
  8. ,barcode = c("TCGA-08-0516"
  9. ,"TCGA-02-0317"
  10. )
  11. )
  12. GDCdownload(query)
  13. clinical <- GDCprepare_clinic(query, clinical.info = "patient")
  14. head(clinical)
  15.  
  16. Error in move(i, file.path(path, i)) :
  17. I could not find the file: c9cdbc76-105d-429b-9fce-f000819716f9
  18. clinical <- GDCprepare_clinic(query, clinical.info = "patient")
  19. Error in GDCprepare_clinic(query, clinical.info = "patient") :
  20. I couldn't find all the files from the query.Please check directory parameter right
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