LIST OF USEFUL RESOURCES FOR SARS-CoV-2/COVID/SARS-2/WUHAN FLU/CHINK PLAGUE

Useful compilation:
https://covid19.specops.network/

>TRACKING/PROJECTING SARS-CoV-2 CASES:

[Worldwide SARS-CoV-2 pandemic info/stats]
https://www.worldometers.info/coronavirus/
https://covid19info.live/
https://ncov2019.live/
https://corona.help/
https://covid.bio/

[US up-to-date values for Rt - virus growth]
https://rt.live/

[Worldwide SARS-CoV-2 data and interactive charts]
https://coronavirus.1point3acres.com/en

[Worldwide case fatality rate mortality]
https://coronavirus.jhu.edu/data/mortality

[US SARS-CoV-2 Positive Cases and Deaths]
https://www.ftppro.com/covid19/

[Worldwide Epidemiological Case Predictions]
https://www.covidanalytics.io/projections

[Worldwide SARS2 Projections + Tests + Hospital (ICU) Stats]
https://covid19.healthdata.org

[Worldwide - infection projections and stats]
https://informationisbeautiful.net/visualizations/covid-19-coronavirus-infographic-datapack/

[Worldwide SARS-CoV-2 Data and Trends]
https://www.c19trends.com/dashboard/

[World coronavirus updates]
https://www.axios.com/coronavirus-latest-developments-8b8990c4-6762-494a-8ee0-5091746bda9b.html

[Case fatality rate of the ongoing SARS-CoV-2 pandemic]
https://ourworldindata.org/grapher/coronavirus-cfr

[SARS2 data-forward, high-quality, interactive, and informative visualizations]
http://91-divoc.com/visualizations.html

[Excess mortality from the SARS-CoV-2 pandemic]
https://ourworldindata.org/excess-mortality-covid

[Comparison of SARS-CoV-2 deaths to other global causes of deaths + timeline]
https://public.flourish.studio/visualisation/2637725/

[IFR: at least 0.6-1%, depends on the country]
http://archive.is/GzM4w

[CFR for all countries]
https://ourworldindata.org/coronavirus-data-explorer?yScale=log&zoomToSelection=true&cfrMetric=true&dailyFreq=true&aligned=true&smoothing=7&country=AFG~ALB~BHR~BRB~COG~CIV~CUB~CMR~BEL~HKG~EuropeanUnion~SRB~OWID_WRL~VIR~TTO~TJK~SSD~ARE~VEN~URY~USA~BGD~AUT~CAN~CHN~BFA~BEN~BLR~BHS~Asia~ARM~AGO~Africa~DZA~AND~ARG~ABW~AUS~AZE~BIH~BRA~BGR~BMU~BDI~CPV~CAF~CHL~COL~CZE~DNK~DOM~EGY~GNQ~EST~Europe~FRO~FIN~GEO~GHA~GRC~GTM~GIN~GUY~HND~HUN~IRN~IND~IRL~ISR~JAM~JEY~KAZ~OWID_KOS~LBN~LBR~KGZ~LTU~MKD~MWI~MDV~MLT~MUS~MDA~MNG~MAR~MMR~NPL~NZL~NER~NorthAmerica~Oceania~PAK~PAN~PER~POL~PRI~ROU~RWA~STP~SEN~SYC~SGP~SVN~ZAF~KOR~SDN~CHE~TWN~YEM~GBR~UKR~RUS~QAT~BOL~NLD~MOZ~NAM~NIC~NGA~ZWE~ZMB~ESH~VNM~VAT~UZB~UGA~TCA~TUR~TUN~TGO~TLS~THA~TZA~SYR~SWE~SWZ~SUR~LKA~ESP~SouthAmerica~SOM~SVK~SXM~SLE~SAU~SMR~VCT~LCA~KNA~PRT~PHL~PRY~PNG~PSE~OMN~NOR~MNP~NCL~MSR~MNE~MCO~MEX~MRT~MLI~MYS~MDG~LUX~LIE~LBY~LSO~LVA~LAO~KWT~KEN~JOR~JPN~ITA~IMN~IRQ~IDN~ISL~HTI~GNB~GGY~GUM~GRD~GRL~GIB~DEU~GMB~GAB~PYF~FRA~FJI~FLK~ETH~ERI~SLV~ECU~DMA~DJI~COD~CYP~CUW~HRV~CRI~COM~TCD~CYM~KHM~BRN~VGB~BWA~BES~BTN~BLZ~ATG~AIA&pickerMetric=location&pickerSort=asc

[Palestine]
https://corona.ps/

[Italy]
https://www.epicentro.iss.it/en/coronavirus/sars-cov-2-dashboard

[Philippines]
doh.gov.ph/covid19tracker

[India]
https://www.covid19india.org/

[UK Data]
https://www.theguardian.com/world/2020/jul/25/coronavirus-near-me-are-uk-covid-19-cases-rising-falling-in-your-area-latest-updates
https://www.theguardian.com/world/2020/jul/25/coronavirus-uk-map-latest-deaths-confirmed-covid-19-cases-england-scotland-wales-northern-ireland
https://coronavirus.data.gov.uk

[USA Coronavirus Tracker (including tests)]
https://grufity.com/world/covid19-coronavirus/US-United-States

[USA Illinois-centered - map+stats for each US county + world map/stats + timelapse]
https://wherecovid19.cigi.illinois.edu/

[USA Florida Coronavirus Stats & Data]
https://experience.arcgis.com/experience/7572b118dc3c48d885d1c643c195314e/

[USA New York Coronavirus Stats & Data]
https://covid19tracker.health.ny.gov/

[USA Texas Coronavirus Stats & Data]
https://txdshs.maps.arcgis.com/apps/opsdashboard/index.html#/0d8bdf9be927459d9cb11b9eaef6101f

[USA SARS2 warning system - stats for every state]
https://covidactnow.org/

[USA Tests for Individual States]
https://coronavirus.jhu.edu/testing/individual-states

[USA comparison of different models]
https://projects.fivethirtyeight.com/covid-forecasts/

[USA Real-time Disease Transmission Stats to Inform Safe Re-Openings]
https://www.kinsahealth.co/kinsa-monitors-real-time-disease-transmission-to-inform-safe-re-openings/

[USA stats + ethnicity stats]
https://covidtracking.com/
https://covidtracking.com/race/dashboard

[USA tracking of symptomatic SARS2 cases]
https://covid.joinzoe.com/us/data

[USA post-reopening states trajectories]
https://projects.propublica.org/reopening-america/

[USA states trend tracker]
https://www.covidexitstrategy.org/

[USA Coronavirus Stats & Data]
https://usafacts.org/issues/coronavirus/

[USA National and Subnational estimates]
https://epiforecasts.io/covid/posts/national/united-states/

[USA CDC Provisional Death Counts Daily Updates of Totals by Week and State]
https://www.cdc.gov/nchs/nvss/vsrr/covid19/index.htm

[USA States Under-reporting: SARS-CoV-2 Deaths + Excess Mortality Comparison]
https://www.woidmo.org/covid-19-news/us-states-under-reporting-coronavirus/

[USA SARS2 Cases by Military Branch]
https://www.datawrapper.de/_/NJ7DG/

[USA SARS2 K-12 SCHOOL CLOSURES, QUARANTINES, AND/OR DEATHS]
https://docs.google.com/spreadsheets/d/e/2PACX-1vQSD9mm5HTXhxAiHabZA6BPUByWBlP5HZ2jfOPEeGZkMB0ZFsmFBL5orqjIq22mjFNZ7n-11ObCylGn/pubhtml

[Worldwide Lockdown and Government Response Trackers]
https://ourworldindata.org/policy-responses-covid
https://www.bsg.ox.ac.uk/research/research-projects/coronavirus-government-response-tracker
https://covid19-lockdown-tracker.netlify.app/image.png

[Worldwide Traffic Index]
https://www.tomtom.com/en_gb/traffic-index/

[CDC - Underlying Cause of Death data for 1999-2018]
https://wonder.cdc.gov/controller/datarequest/D76

[Mobility Trends Reports of filthy Apple consumers]
https://www.apple.com/covid19/mobility

[Worldwide interactive visualization of the exponential spread of SARS-CoV-2]
http://www.91-divoc.com/pages/covid-visualization/

[Worldwide Data for Specific Locations interactive visualization of the exponential spread of SARS-CoV-2]
http://www.91-divoc.com/pages/covid-by-your-locations/




https://coronavirus.jhu.edu/data/racial-data-transparency


https://peterljw.shinyapps.io/covid_dashboard/


[USA racial data stats for every state]
https://docs.google.com/spreadsheets/u/1/d/e/2PACX-1vTfUQPxkhP_CRcGmnnpUBihnTNZ9Z8pcizII4_sc2o2n3opOoAJdAM4CRTJBI339tou8LWnQrqbTMgH/pubhtml#

[France projections]
http://www.chu-nancy.fr/images/articles/covidie/France_1-3.pdf
http://archive.is/PDHES

[USA - Look up influenza-like illness near you - for every state]
https://healthweather.us

[Phylogenic tree data n' more - better than nextstrain]
https://covidcg.org/

[Limited phylogenic tree data, constantly "edited" - peak number of sequenced genomes shown - 5,429, peak number of sequenced genomes shown seen archived - 4412 (http://archive.is/LMseK), current - 3087 (as of 28-06-2020)]
https://nextstrain.org/ncov

[TREATMENT AND VACCINE TRACKER]
https://milkeninstitute.org/covid-19-tracker

[Curated listing of interventional clinical trials in SARS2]
http://www.redo-project.org/covid19db/

[Software/Tools/Websites]
Autodock Vina
http://vina.scripps.edu/

GALAXY
https://galaxyproject.org/

Codon Usage Database
https://www.kazusa.or.jp/codon/
https://www.genscript.com/tools/codon-frequency-table

BLAST
https://blast.ncbi.nlm.nih.gov/Blast.cgi?LINK_LOC=blasthome&PAGE_TYPE=BlastSearch&PROGRAM=blastp

Sequence alignment calculator (simpler than BLAST)
http://multalin.toulouse.inra.fr/multalin/

GenBank
https://www.ncbi.nlm.nih.gov/

ViPR
https://www.viprbrc.org/brc/home.spg?decorator=corona

Molecular Docking
http://autodock.scripps.edu/

Bio - Linux
http://environmentalomics.org/bio-linux/


[Best practices for the analysis of SARS-CoV-2 data: Genomics, Proteomics, Evolution, and Cheminformatics]
https://covid19.galaxyproject.org/

[ARCHIVE]
https://archive.is
https://archive.vn
https://via.hypothes.is/
https://freezepage.com
https://web.archive.org/

[FOOD INDUSTRY AND SARS-CoV-2 NEWS]
https://www.just-food.com/hot-issues/how-is-coronavirus-affecting-food-industry_id1169.aspx


[RESEARCH ABOUT SARS-CoV-2]
https://www.elsevier.com/connect/coronavirus-information-center?dgcid=_SD_banner
https://www.cell.com/COVID-19
https://www.thelancet.com/action/doSearch?searchType=quick&searchText=covid&searchScope=fullSite&occurrences=all&code=lancet-site
https://www.ncbi.nlm.nih.gov/sars-cov-2/
https://www.ncbi.nlm.nih.gov/research/coronavirus/docsum
https://www.nejm.org/

https://rapidreviewscovid19.mitpress.mit.edu/
https://www.nih.gov/coronavirus
https://www.sciencedaily.com/search/?keyword=coronavirus#gsc.tab=0&gsc.q=coronavirus&gsc.page=1

https://www.researchsquare.com/coronavirus
https://www.researchgate.net/community/COVID-19
https://www.frontiersin.org/search/journal/immunology?query=coronavirus&tab=top-results&origin=https%3A%2F%2Fwww.frontiersin.org%2Fjournals%2Fimmunology
https://osf.io/search/?q=coronavirus&page=1

https://www.sciencedirect.com/search?qs=sars-cov-2
https://www.ncbi.nlm.nih.gov/sars-cov-2/

https://www.nejm.org/
https://rapidreviewscovid19.mitpress.mit.edu/
https://www.scmp.com/coronavirus
https://www.thenakedscientists.com/covid

https://content.iospress.com/search?order=dc_issued&start=60&q=covid&from_year=&published_between=&to_year=
https://www.eurekalert.org/covid-19/newsroom/index.php?start=1
https://www.sciencedaily.com/
https://www.tandfonline.com/

[Pre-prints]
https://www.preprints.org/covid19
https://www.arxiv.org/
https://connect.biorxiv.org/relate/content/181
https://chemrxiv.org/
https://www.biorxiv.org/
https://www.medrxiv.org/
https://www.biorxiv.org/search/covid%252Bsars-cov-2%20jcode%3Abiorxiv%20subject_collection_code%3ABiochemistry%2CCell%20Biology%2CEpidemiology%2CNeuroscience%2CPathology%2CPhysiology%20toc_section%3ANew%20Results%2CConfirmatory%20Results%20numresults%3A75%20sort%3Apublication-date%20direction%3Adescending%20format_result%3Astandard
https://www.medrxiv.org/search/covid%252Bsars-cov-2%20jcode%3Amedrxiv%20subject_collection_code%3ACardiovascular%20Medicine%2CDermatology%2CEndocrinology%2CEpidemiology%2CGastroenterology%2CHematology%2CNeurology%2COphthalmology%2COrthopedics%2COtolaryngology%2CPathology%2CPsychiatry%20and%20Clinical%20Psychology%2CPublic%20and%20Global%20Health%2CRadiology%20and%20Imaging%2CRespiratory%20Medicine%2CRheumatology%2CSexual%20and%20Reproductive%20Health%20numresults%3A75%20sort%3Apublication-date%20direction%3Adescending%20format_result%3Astandard


https://content.iospress.com/search?order=dc_issued&start=60&q=covid&from_year=&published_between=&to_year=
https://www.eurekalert.org/covid-19/newsroom/index.php?start=1
https://www.sciencedaily.com/
https://www.tandfonline.com/
https://outbreaksci.prereview.org/
https://www.scmp.com/coronavirus
https://www.thenakedscientists.com/covid
https://retractionwatch.com/retracted-coronavirus-covid-19-papers/
https://www.thailandmedical.news/

[Group Library on SARS-CoV-2]
https://www.zotero.org/groups/2486852/covid19reviewgroup001/library


[RAIDOLOGY AND SARS-CoV-2]
https://pubs.rsna.org/action/doSearch?AllField=coronavirus&SeriesKey=radiology&sortBy=Earliest


[RESOURCES FOR NEUROLOGICAL SYMPTOMS OF SARS2]
https://www.ean.org/ean/eancore-covid-19
https://braininfectionsglobal.tghn.org/covid-neurology-resource/
http://coronerve.com/
https://wfneurology.org/covid-19-and-world-neurology
https://www.thelancet.com/journals/laneur/article/PIIS1474-4422(20)30150-2/fulltext
https://ictalgroup.org/2020/04/08/spectrum-of-neurological-manifestations-associated-with-sars-cov-2-infections/
https://papers.ssrn.com/sol3/papers.cfm?abstract_id=3601761
https://www.cureus.com/articles/30897-covid-19-pandemic-a-neurological-perspective