/home/ubuntu/AdmixTools-master/bin/qpAdm: parameter file: qpAdm_parfile
### THE INPUT PARAMETERS
##PARAMETER NAME: VALUE
genotypename: /home/ubuntu/DataSet1/data.geno
snpname: /home/ubuntu/DataSet1/data.snp
indivname: /home/ubuntu/DataSet1/data.ind
popleft: pleftA.txt
popright: pRightC.txt
## qpAdm version: 1201
seed: 1428899685
read 1073741824 bytes
read 2147483648 bytes
read 2859357147 bytes
packed geno read OK
end of inpack

left pops:
Moldova_Cimmerian2.SG
Russia_Srubnaya_Alakul.SG
Russia_Shamanka_EBA.SG
Turkmenistan_Gonur_BA_1

right pops:
Cameroon_SMA.DG
Turkey_Epipaleolithic
Russia_MA1_HG.SG
Israel_PPNB
Russia_Kolyma_M.SG
Iran_GanjDareh_N
Brazil_LapaDoSanto_9600BP
Russia_Kostenki14.SG
China_Tianyuan
Russia_HG_Tyumen
Mongolia_North_N
Georgia_Satsurblia.SG
Italy_North_Villabruna_HG
Serbia_EN_Starcevo

  0 Moldova_Cimmerian2.SG    1
  1 Russia_Srubnaya_Alakul.SG   12
  2 Russia_Shamanka_EBA.SG    5
  3 Turkmenistan_Gonur_BA_1   19
  4      Cameroon_SMA.DG    1
  5 Turkey_Epipaleolithic    1
  6     Russia_MA1_HG.SG    1
  7          Israel_PPNB    1
  8   Russia_Kolyma_M.SG    1
  9     Iran_GanjDareh_N    8
 10 Brazil_LapaDoSanto_9600BP    4
 11 Russia_Kostenki14.SG    1
 12       China_Tianyuan    1
 13     Russia_HG_Tyumen    1
 14     Mongolia_North_N    6
 15 Georgia_Satsurblia.SG    1
 16 Italy_North_Villabruna_HG    1
 17   Serbia_EN_Starcevo    1
jackknife block size:     0.050
snps: 1150466  indivs: 66
number of blocks for block jackknife: 714
## ncols: 1150466
coverage: Moldova_Cimmerian2.SG 156329
coverage: Russia_Srubnaya_Alakul.SG 1150047
coverage: Russia_Shamanka_EBA.SG 1042830
coverage: Turkmenistan_Gonur_BA_1 950812
coverage:      Cameroon_SMA.DG 1140138
coverage: Turkey_Epipaleolithic 848431
coverage:     Russia_MA1_HG.SG 805960
coverage:          Israel_PPNB 737560
coverage:   Russia_Kolyma_M.SG 1149857
coverage:     Iran_GanjDareh_N 1057358
coverage: Brazil_LapaDoSanto_9600BP 883139
coverage: Russia_Kostenki14.SG 1048972
coverage:       China_Tianyuan 885079
coverage:     Russia_HG_Tyumen 805417
coverage:     Mongolia_North_N 1061245
coverage: Georgia_Satsurblia.SG 801311
coverage: Italy_North_Villabruna_HG 883779
coverage:   Serbia_EN_Starcevo 816289
Effective number of blocks:   599.810
numsnps used: 88657
codimension 1
f4info:
f4rank: 2 dof:     11 chisq:    11.233 tail:          0.423976989 dofdiff:     13 chisqdiff:   -11.233 taildiff:                    1
B:
          scale     1.000     1.000
Turkey_Epipaleolithic    -0.669     0.887
Russia_MA1_HG.SG    -0.106     1.107
    Israel_PPNB    -0.998     0.457
Russia_Kolyma_M.SG     1.579     0.392
Iran_GanjDareh_N    -0.555    -1.101
Brazil_LapaDoSanto_9600BP     1.144     0.693
Russia_Kostenki14.SG    -0.195     0.726
 China_Tianyuan     1.092     0.333
Russia_HG_Tyumen     0.341     1.594
Mongolia_North_N     2.046     0.156
Georgia_Satsurblia.SG    -0.943     0.333
Italy_North_Villabruna_HG    -0.707     2.314
Serbia_EN_Starcevo    -0.718     0.514
A:
          scale   811.382  2418.288
Russia_Srubnaya_Alakul.SG    -0.463     0.613
Russia_Shamanka_EBA.SG     1.578    -0.103
Turkmenistan_Gonur_BA_1    -0.545    -1.617


full rank
f4info:
f4rank: 3 dof:      0 chisq:     0.000 tail:                    1 dofdiff:     11 chisqdiff:    11.233 taildiff:          0.423976989
B:
          scale  1407.887   507.649   877.680
Turkey_Epipaleolithic     0.932    -0.674    -0.151
Russia_MA1_HG.SG     0.486    -0.152    -0.643
    Israel_PPNB     0.623    -1.151     0.053
Russia_Kolyma_M.SG    -1.877     1.237    -1.660
Iran_GanjDareh_N    -0.187    -0.618     0.784
Brazil_LapaDoSanto_9600BP    -0.691     1.116    -1.125
Russia_Kostenki14.SG    -0.519    -0.545    -0.872
 China_Tianyuan    -1.583     0.789    -1.344
Russia_HG_Tyumen     0.620     0.413    -0.972
Mongolia_North_N    -1.961     1.883    -1.551
Georgia_Satsurblia.SG     0.172    -1.183    -0.027
Italy_North_Villabruna_HG     0.654    -1.035    -1.380
Serbia_EN_Starcevo     0.089    -0.967    -0.322
A:
          scale     1.732     1.732     1.732
Russia_Srubnaya_Alakul.SG     1.732     0.000     0.000
Russia_Shamanka_EBA.SG     0.000     1.732     0.000
Turkmenistan_Gonur_BA_1     0.000     0.000     1.732


best coefficients:     0.566     0.235     0.200
Jackknife mean:      0.563858284     0.234802737     0.201338979
      std. errors:     0.108     0.032     0.103

error covariance (* 1,000,000)
     11681       -985     -10696
      -985       1001        -16
    -10696        -16      10712


summ: Moldova_Cimmerian2.SG    3      0.423977     0.564     0.235     0.201      11681       -985     -10696       1001        -16   ...
     10712

    fixed pat  wt  dof     chisq       tail prob
          000  0    11    11.233        0.423977     0.566     0.235     0.200
          001  1    12    15.029        0.239879     0.765     0.235     0.000
          010  1    12    62.019     9.64887e-09     0.868     0.000     0.132
          100  1    12    38.699     0.000117963     0.000     0.284     0.716
          011  2    13    63.016     1.50824e-08     1.000     0.000     0.000
          101  2    13   369.736               0     0.000     1.000     0.000
          110  2    13   109.050      2.8669e-17     0.000     0.000     1.000
best pat:          000         0.423977              -  -
best pat:          001         0.239879  chi(nested):     3.796 p-value for nested model:       0.0513807
best pat:          011      1.50824e-08  chi(nested):    47.987 p-value for nested model:     4.29009e-12