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misnomer001

steppe_EMBA = EHG + CHG + Tarim fail

misnomer001
Aug 19th, 2022
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  1. qpAdm: parameter file: parqpadm
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. fstatsname: fstatsa5.txt
  5. popleft: left
  6. popright: right
  7. details: YES
  8. allsnps: YES
  9. inbreed: NO
  10. oldallsnps: NO
  11. ## qpAdm version: 1520
  12. seed: 2130492839
  13. inbreed set NO
  14. inbreed set NO
  15.  
  16. left pops:
  17. Steppe_EMBA
  18. EHG
  19. CHG_Kotias
  20. Tarim_EMBA1
  21.  
  22. right pops:
  23. Mbuti.DG
  24. ONG.SG
  25. CHG_Satsurblia
  26. Serbia_IronGates_Mesolithic
  27. Russia_Khvalynsk_Eneolithic
  28. Russia_Shamanka_Eneolithic.SG
  29. PPN
  30. Iran_GanjDareh_N
  31. Turkey_N
  32. WSHG
  33.  
  34. codimension 1
  35. f4info:
  36. f4rank: 2 dof: 7 chisq: 50.531 tail: 1.13626137e-08 dofdiff: 9 chisqdiff: -50.531 taildiff: 1
  37. B:
  38. scale 1.000 1.000
  39. ONG.SG 0.427 -0.687
  40. CHG_Satsurblia -1.318 -0.033
  41. Serbia_IronGates_Mesolithic 0.694 2.181
  42. Russia_Khvalynsk_Eneolithic 1.304 0.947
  43. Russia_Shamanka_Eneolithic.SG 0.797 -1.084
  44. PPN -0.197 0.569
  45. Iran_GanjDareh_N -0.430 -0.219
  46. Turkey_N -0.248 0.771
  47. WSHG 1.994 -0.855
  48. A:
  49. scale 221.299 573.102
  50. EHG 0.422 1.413
  51. CHG_Kotias -1.570 0.020
  52. Tarim_EMBA1 0.598 -1.002
  53.  
  54.  
  55. full rank
  56. f4info:
  57. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 7 chisqdiff: 50.531 taildiff: 1.13626137e-08
  58. B:
  59. scale 335.433 135.173 312.177
  60. ONG.SG -0.230 -0.423 0.770
  61. CHG_Satsurblia -0.558 1.479 -0.786
  62. Serbia_IronGates_Mesolithic 2.226 -0.697 -0.627
  63. Russia_Khvalynsk_Eneolithic 1.621 -1.258 0.575
  64. Russia_Shamanka_Eneolithic.SG -0.245 -0.726 1.386
  65. PPN 0.264 0.128 -0.594
  66. Iran_GanjDareh_N -0.700 0.277 -0.489
  67. Turkey_N 0.389 0.159 -0.752
  68. WSHG 0.533 -1.980 1.996
  69. A:
  70. scale 1.732 1.732 1.732
  71. EHG 1.732 0.000 0.000
  72. CHG_Kotias 0.000 1.732 0.000
  73. Tarim_EMBA1 0.000 0.000 1.732
  74.  
  75.  
  76. best coefficients: 0.309 0.251 0.440
  77. totmean: 0.309 0.251 0.440
  78. boot mean: 0.309 0.251 0.440
  79. std. errors: 0.018 0.011 0.017
  80.  
  81. error covariance (* 1,000,000)
  82. 330 -77 -252
  83. -77 126 -49
  84. -252 -49 301
  85.  
  86.  
  87. summ: Steppe_EMBA 3 0.000000 0.309 0.251 0.440 330 -77 -252 126 -49 ...
  88. 301
  89.  
  90. fixed pat wt dof chisq tail prob
  91. 000 0 7 50.531 1.13626e-08 0.309 0.251 0.440
  92. 001 1 8 474.829 0 0.698 0.302 0.000
  93. 010 1 8 544.613 0 0.455 0.000 0.545
  94. 100 1 8 309.275 0 0.000 0.322 0.678
  95. 011 2 9 926.699 0 1.000 0.000 0.000
  96. 101 2 9 1797.525 0 0.000 1.000 0.000
  97. 110 2 9 954.988 0 0.000 0.000 1.000
  98. best pat: 000 1.13626e-08 - -
  99. best pat: 100 4.36538e-62 chi(nested): 258.744 p-value for nested model: 3.22266e-58
  100. best pat: 011 1.09196e-193 not nested
  101.  
  102. coeffs: 0.309 0.251 0.440
  103.  
  104. ## dscore:: f_4(Base, Fit, Rbase, right2)
  105. ## genstat:: f_4(Base, Fit, right1, right2)
  106.  
  107. details: EHG ONG.SG -0.000685 -2.121914
  108. details: CHG_Kotias ONG.SG -0.003126 -6.808337
  109. details: Tarim_EMBA1 ONG.SG 0.002465 7.785390
  110. dscore: ONG.SG f4: 0.000090 Z: 0.346152
  111.  
  112. details: EHG CHG_Satsurblia -0.001663 -3.913349
  113. details: CHG_Kotias CHG_Satsurblia 0.010943 15.216256
  114. details: Tarim_EMBA1 CHG_Satsurblia -0.002518 -6.313928
  115. dscore: CHG_Satsurblia f4: 0.001122 Z: 3.169422
  116.  
  117. details: EHG Serbia_IronGates_Mesolithic 0.006635 21.041269
  118. details: CHG_Kotias Serbia_IronGates_Mesolithic -0.005159 -11.493974
  119. details: Tarim_EMBA1 Serbia_IronGates_Mesolithic -0.002009 -6.615591
  120. dscore: Serbia_IronGates_Mesolithic f4: -0.000131 Z: -0.526681
  121.  
  122. details: EHG Russia_Khvalynsk_Eneolithic 0.004833 11.444898
  123. details: CHG_Kotias Russia_Khvalynsk_Eneolithic -0.009308 -17.354261
  124. details: Tarim_EMBA1 Russia_Khvalynsk_Eneolithic 0.001843 4.537685
  125. dscore: Russia_Khvalynsk_Eneolithic f4: -0.000031 Z: -0.093862
  126.  
  127. details: EHG Russia_Shamanka_Eneolithic.SG -0.000730 -2.272947
  128. details: CHG_Kotias Russia_Shamanka_Eneolithic.SG -0.005371 -12.406025
  129. details: Tarim_EMBA1 Russia_Shamanka_Eneolithic.SG 0.004440 14.016240
  130. dscore: Russia_Shamanka_Eneolithic.SG f4: 0.000383 Z: 1.460813
  131.  
  132. details: EHG PPN 0.000786 2.185259
  133. details: CHG_Kotias PPN 0.000949 1.975863
  134. details: Tarim_EMBA1 PPN -0.001902 -5.510423
  135. dscore: PPN f4: -0.000357 Z: -1.241774
  136.  
  137. details: EHG Iran_GanjDareh_N -0.002086 -6.927607
  138. details: CHG_Kotias Iran_GanjDareh_N 0.002046 4.743462
  139. details: Tarim_EMBA1 Iran_GanjDareh_N -0.001568 -5.534622
  140. dscore: Iran_GanjDareh_N f4: -0.000821 Z: -3.466176
  141.  
  142. details: EHG Turkey_N 0.001160 4.179572
  143. details: CHG_Kotias Turkey_N 0.001173 2.964585
  144. details: Tarim_EMBA1 Turkey_N -0.002409 -8.784214
  145. dscore: Turkey_N f4: -0.000409 Z: -1.842864
  146.  
  147. details: EHG WSHG 0.001589 3.799445
  148. details: CHG_Kotias WSHG -0.014645 -27.324997
  149. details: Tarim_EMBA1 WSHG 0.006395 15.620963
  150. dscore: WSHG f4: -0.000366 Z: -1.080033
  151.  
  152. gendstat: Mbuti.DG ONG.SG 0.346
  153. gendstat: Mbuti.DG CHG_Satsurblia 3.169
  154. gendstat: Mbuti.DG Serbia_IronGates_Mesolithic -0.527
  155. gendstat: Mbuti.DG Russia_Khvalynsk_Eneolithic -0.094
  156. gendstat: Mbuti.DG Russia_Shamanka_Eneolithic.SG 1.461
  157. gendstat: Mbuti.DG PPN -1.242
  158. gendstat: Mbuti.DG Iran_GanjDareh_N -3.466
  159. gendstat: Mbuti.DG Turkey_N -1.843
  160. gendstat: Mbuti.DG WSHG -1.080
  161. gendstat: ONG.SG CHG_Satsurblia 2.834
  162. gendstat: ONG.SG Serbia_IronGates_Mesolithic -0.819
  163. gendstat: ONG.SG Russia_Khvalynsk_Eneolithic -0.356
  164. gendstat: ONG.SG Russia_Shamanka_Eneolithic.SG 1.281
  165. gendstat: ONG.SG PPN -1.419
  166. gendstat: ONG.SG Iran_GanjDareh_N -3.417
  167. gendstat: ONG.SG Turkey_N -1.961
  168. gendstat: ONG.SG WSHG -1.328
  169. gendstat: CHG_Satsurblia Serbia_IronGates_Mesolithic -3.610
  170. gendstat: CHG_Satsurblia Russia_Khvalynsk_Eneolithic -2.889
  171. gendstat: CHG_Satsurblia Russia_Shamanka_Eneolithic.SG -2.010
  172. gendstat: CHG_Satsurblia PPN -4.014
  173. gendstat: CHG_Satsurblia Iran_GanjDareh_N -5.851
  174. gendstat: CHG_Satsurblia Turkey_N -4.677
  175. gendstat: CHG_Satsurblia WSHG -3.597
  176. gendstat: Serbia_IronGates_Mesolithic Russia_Khvalynsk_Eneolithic 0.361
  177. gendstat: Serbia_IronGates_Mesolithic Russia_Shamanka_Eneolithic.SG 1.881
  178. gendstat: Serbia_IronGates_Mesolithic PPN -0.898
  179. gendstat: Serbia_IronGates_Mesolithic Iran_GanjDareh_N -2.858
  180. gendstat: Serbia_IronGates_Mesolithic Turkey_N -1.538
  181. gendstat: Serbia_IronGates_Mesolithic WSHG -0.748
  182. gendstat: Russia_Khvalynsk_Eneolithic Russia_Shamanka_Eneolithic.SG 1.247
  183. gendstat: Russia_Khvalynsk_Eneolithic PPN -0.950
  184. gendstat: Russia_Khvalynsk_Eneolithic Iran_GanjDareh_N -2.534
  185. gendstat: Russia_Khvalynsk_Eneolithic Turkey_N -1.314
  186. gendstat: Russia_Khvalynsk_Eneolithic WSHG -1.034
  187. gendstat: Russia_Shamanka_Eneolithic.SG PPN -2.404
  188. gendstat: Russia_Shamanka_Eneolithic.SG Iran_GanjDareh_N -4.489
  189. gendstat: Russia_Shamanka_Eneolithic.SG Turkey_N -3.143
  190. gendstat: Russia_Shamanka_Eneolithic.SG WSHG -2.295
  191. gendstat: PPN Iran_GanjDareh_N -1.759
  192. gendstat: PPN Turkey_N -0.248
  193. gendstat: PPN WSHG -0.024
  194. gendstat: Iran_GanjDareh_N Turkey_N 2.005
  195. gendstat: Iran_GanjDareh_N WSHG 1.345
  196. gendstat: Turkey_N WSHG 0.133
  197.  
  198. ##end of qpAdm: 5.341 seconds cpu 0.811 Mbytes in use
  199.  
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