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misnomer001

megiddo outlier bgr_mba

misnomer001
Jun 1st, 2020
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  1. ALLSNPS: YES
  2. ## qpAdm version: 1000
  3. seed: 1824418620
  4. read 1073741824 bytes
  5. read 2147483648 bytes
  6. read 2202161218 bytes
  7. packed geno read OK
  8. end of inpack
  9.  
  10. left pops:
  11. Megiddo_MLBA_outlierfamily
  12. Megiddo_MLBA
  13. Bulgaria_MLBA
  14.  
  15. right pops:
  16. Cameroon_SMA.DG
  17. EEHG
  18. WSHG
  19. PPN
  20. WEHG
  21. Anatolia_N
  22. Iran_GanjDareh_N
  23. Russia_UstBelaya_Angara
  24. ONG.SG
  25. Botai
  26. Russia_Steppe_Catacomb
  27.  
  28. 0 Megiddo_MLBA_outlierfamily 2
  29. 1 Megiddo_MLBA 22
  30. 2 Bulgaria_MLBA 1
  31. 3 Cameroon_SMA.DG 1
  32. 4 EEHG 5
  33. 5 WSHG 3
  34. 6 PPN 11
  35. 7 WEHG 33
  36. 8 Anatolia_N 22
  37. 9 Iran_GanjDareh_N 8
  38. 10 Russia_UstBelaya_Angara 8
  39. 11 ONG.SG 6
  40. 12 Botai 2
  41. 13 Russia_Steppe_Catacomb 4
  42. jackknife block size: 0.050
  43. snps: 1150505 indivs: 128
  44. number of blocks for block jackknife: 713
  45. ## ncols: 1150505
  46. coverage: Megiddo_MLBA_outlierfamily 625041
  47. coverage: Megiddo_MLBA 989505
  48. coverage: Bulgaria_MLBA 808285
  49. coverage: Cameroon_SMA.DG 1140138
  50. coverage: EEHG 1052093
  51. coverage: WSHG 858019
  52. coverage: PPN 847771
  53. coverage: WEHG 1140599
  54. coverage: Anatolia_N 1139031
  55. coverage: Iran_GanjDareh_N 1057358
  56. coverage: Russia_UstBelaya_Angara 1072574
  57. coverage: ONG.SG 1143397
  58. coverage: Botai 926654
  59. coverage: Russia_Steppe_Catacomb 863785
  60. dof (jackknife): 634.263
  61. numsnps used: 538905
  62. codimension 1
  63. f4info:
  64. f4rank: 1 dof: 9 chisq: 11.044 tail: 0.272699477 dofdiff: 11 chisqdiff: -11.044 taildiff: 1
  65. B:
  66. scale 1.000
  67. EEHG 1.561
  68. WSHG 1.415
  69. PPN -0.720
  70. WEHG 1.205
  71. Anatolia_N -0.261
  72. Iran_GanjDareh_N 0.070
  73. Russia_UstBelaya_Angara 0.685
  74. ONG.SG 0.406
  75. Botai 1.348
  76. Russia_Steppe_Catacomb 1.033
  77. A:
  78. scale 423.513
  79. Megiddo_MLBA -0.550
  80. Bulgaria_MLBA 1.303
  81.  
  82.  
  83. full rank
  84. f4info:
  85. f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 9 chisqdiff: 11.044 taildiff: 0.272699477
  86. B:
  87. scale 816.025 306.895
  88. EEHG -1.251 1.688
  89. WSHG -1.429 1.379
  90. PPN 0.979 -0.547
  91. WEHG -1.023 1.281
  92. Anatolia_N 0.538 -0.099
  93. Iran_GanjDareh_N -0.173 0.051
  94. Russia_UstBelaya_Angara -0.777 0.645
  95. ONG.SG -0.376 0.447
  96. Botai -1.324 1.351
  97. Russia_Steppe_Catacomb -1.254 0.924
  98. A:
  99. scale 1.414 1.414
  100. Megiddo_MLBA 1.414 0.000
  101. Bulgaria_MLBA 0.000 1.414
  102.  
  103.  
  104. best coefficients: 0.703 0.297
  105. Jackknife mean: 0.703273583 0.296726417
  106. std. errors: 0.028 0.028
  107.  
  108. error covariance (* 1,000,000)
  109. 776 -776
  110. -776 776
  111.  
  112.  
  113. summ: Megiddo_MLBA_outlierfamily 2 0.272699 0.703 0.297 776 -776 776
  114.  
  115. fixed pat wt dof chisq tail prob
  116. 00 0 9 11.044 0.272699 0.703 0.297
  117. 01 1 10 140.019 4.17727e-25 1.000 0.000
  118. 10 1 10 313.682 0 0.000 1.000
  119. best pat: 00 0.272699 - -
  120. best pat: 01 4.17727e-25 chi(nested): 128.975 p-value for nested model: 6.86895e-30
  121.  
  122. coeffs: 0.703 0.297
  123.  
  124. ## dscore:: f_4(Base, Fit, Rbase, right2)
  125. ## genstat:: f_4(Base, Fit, right1, right2)
  126.  
  127. details: Megiddo_MLBA EEHG -0.001533 -4.128991
  128. details: Bulgaria_MLBA EEHG 0.005501 10.203546
  129. dscore: EEHG f4: 0.000556 Z: 1.454295
  130.  
  131. details: Megiddo_MLBA WSHG -0.001751 -4.463611
  132. details: Bulgaria_MLBA WSHG 0.004494 8.002421
  133. dscore: WSHG f4: 0.000104 Z: 0.255082
  134.  
  135. details: Megiddo_MLBA PPN 0.001199 3.365091
  136. details: Bulgaria_MLBA PPN -0.001783 -3.616080
  137. dscore: PPN f4: 0.000313 Z: 0.858320
  138.  
  139. details: Megiddo_MLBA WEHG -0.001254 -3.889365
  140. details: Bulgaria_MLBA WEHG 0.004174 8.451351
  141. dscore: WEHG f4: 0.000358 Z: 1.045318
  142.  
  143. details: Megiddo_MLBA Anatolia_N 0.000659 2.169606
  144. details: Bulgaria_MLBA Anatolia_N -0.000323 -0.764106
  145. dscore: Anatolia_N f4: 0.000367 Z: 1.197463
  146.  
  147. details: Megiddo_MLBA Iran_GanjDareh_N -0.000211 -0.655779
  148. details: Bulgaria_MLBA Iran_GanjDareh_N 0.000165 0.365170
  149. dscore: Iran_GanjDareh_N f4: -0.000100 Z: -0.302506
  150.  
  151. details: Megiddo_MLBA Russia_UstBelaya_Angara -0.000952 -2.893866
  152. details: Bulgaria_MLBA Russia_UstBelaya_Angara 0.002102 4.506395
  153. dscore: Russia_UstBelaya_Angara f4: -0.000045 Z: -0.133004
  154.  
  155. details: Megiddo_MLBA ONG.SG -0.000461 -1.417519
  156. details: Bulgaria_MLBA ONG.SG 0.001456 3.082559
  157. dscore: ONG.SG f4: 0.000108 Z: 0.324375
  158.  
  159. details: Megiddo_MLBA Botai -0.001622 -4.239262
  160. details: Bulgaria_MLBA Botai 0.004402 7.945980
  161. dscore: Botai f4: 0.000167 Z: 0.424386
  162.  
  163. details: Megiddo_MLBA Russia_Steppe_Catacomb -0.001537 -4.564058
  164. details: Bulgaria_MLBA Russia_Steppe_Catacomb 0.003012 6.517082
  165. dscore: Russia_Steppe_Catacomb f4: -0.000186 Z: -0.550512
  166.  
  167. gendstat: Cameroon_SMA.DG EEHG 1.454
  168. gendstat: Cameroon_SMA.DG WSHG 0.255
  169. gendstat: Cameroon_SMA.DG PPN 0.858
  170. gendstat: Cameroon_SMA.DG WEHG 1.045
  171. gendstat: Cameroon_SMA.DG Anatolia_N 1.197
  172. gendstat: Cameroon_SMA.DG Iran_GanjDareh_N -0.303
  173. gendstat: Cameroon_SMA.DG Russia_UstBelaya_Angara -0.133
  174. gendstat: Cameroon_SMA.DG ONG.SG 0.324
  175. gendstat: Cameroon_SMA.DG Botai 0.424
  176. gendstat: Cameroon_SMA.DG Russia_Steppe_Catacomb -0.551
  177. gendstat: EEHG WSHG -1.423
  178. gendstat: EEHG PPN -0.692
  179. gendstat: EEHG WEHG -0.762
  180. gendstat: EEHG Anatolia_N -0.649
  181. gendstat: EEHG Iran_GanjDareh_N -1.902
  182. gendstat: EEHG Russia_UstBelaya_Angara -2.035
  183. gendstat: EEHG ONG.SG -1.320
  184. gendstat: EEHG Botai -1.182
  185. gendstat: EEHG Russia_Steppe_Catacomb -2.516
  186. gendstat: WSHG PPN 0.523
  187. gendstat: WSHG WEHG 0.811
  188. gendstat: WSHG Anatolia_N 0.744
  189. gendstat: WSHG Iran_GanjDareh_N -0.551
  190. gendstat: WSHG Russia_UstBelaya_Angara -0.470
  191. gendstat: WSHG ONG.SG 0.014
  192. gendstat: WSHG Botai 0.200
  193. gendstat: WSHG Russia_Steppe_Catacomb -0.838
  194. gendstat: PPN WEHG 0.154
  195. gendstat: PPN Anatolia_N 0.231
  196. gendstat: PPN Iran_GanjDareh_N -1.264
  197. gendstat: PPN Russia_UstBelaya_Angara -1.098
  198. gendstat: PPN ONG.SG -0.610
  199. gendstat: PPN Botai -0.385
  200. gendstat: PPN Russia_Steppe_Catacomb -1.493
  201. gendstat: WEHG Anatolia_N 0.039
  202. gendstat: WEHG Iran_GanjDareh_N -1.522
  203. gendstat: WEHG Russia_UstBelaya_Angara -1.497
  204. gendstat: WEHG ONG.SG -0.832
  205. gendstat: WEHG Botai -0.603
  206. gendstat: WEHG Russia_Steppe_Catacomb -2.053
  207. gendstat: Anatolia_N Iran_GanjDareh_N -1.768
  208. gendstat: Anatolia_N Russia_UstBelaya_Angara -1.537
  209. gendstat: Anatolia_N ONG.SG -0.920
  210. gendstat: Anatolia_N Botai -0.580
  211. gendstat: Anatolia_N Russia_Steppe_Catacomb -2.166
  212. gendstat: Iran_GanjDareh_N Russia_UstBelaya_Angara 0.191
  213. gendstat: Iran_GanjDareh_N ONG.SG 0.709
  214. gendstat: Iran_GanjDareh_N Botai 0.747
  215. gendstat: Iran_GanjDareh_N Russia_Steppe_Catacomb -0.288
  216. gendstat: Russia_UstBelaya_Angara ONG.SG 0.592
  217. gendstat: Russia_UstBelaya_Angara Botai 0.717
  218. gendstat: Russia_UstBelaya_Angara Russia_Steppe_Catacomb -0.490
  219. gendstat: ONG.SG Botai 0.168
  220. gendstat: ONG.SG Russia_Steppe_Catacomb -0.932
  221. gendstat: Botai Russia_Steppe_Catacomb -1.026
  222.  
  223. ##end of qpAdm: 390.350 seconds cpu 1257.607 Mbytes in use
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