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- cat dirac.sh.e197 dirac.sh.o197
- + set -e
- + nodefile=/tmp/197.cmbcluster.nodelist
- + echo group main
- ++ cat /var/spool/torque/aux//197.cmbcluster
- + nodes='node034
- node034
- node034
- node034
- node034
- node034
- node034
- node034
- node034
- node034
- node034
- node034
- node033
- node033
- node033
- node033
- node033
- node033
- node033
- node033
- node033
- node033
- node033
- node033'
- + for node in '$nodes'
- + echo host node034
- + for node in '$nodes'
- + echo host node034
- + for node in '$nodes'
- + echo host node034
- + for node in '$nodes'
- + echo host node034
- + for node in '$nodes'
- + echo host node034
- + for node in '$nodes'
- + echo host node034
- + for node in '$nodes'
- + echo host node034
- + for node in '$nodes'
- + echo host node034
- + for node in '$nodes'
- + echo host node034
- + for node in '$nodes'
- + echo host node034
- + for node in '$nodes'
- + echo host node034
- + for node in '$nodes'
- + echo host node034
- + for node in '$nodes'
- + echo host node033
- + for node in '$nodes'
- + echo host node033
- + for node in '$nodes'
- + echo host node033
- + for node in '$nodes'
- + echo host node033
- + for node in '$nodes'
- + echo host node033
- + for node in '$nodes'
- + echo host node033
- + for node in '$nodes'
- + echo host node033
- + for node in '$nodes'
- + echo host node033
- + for node in '$nodes'
- + echo host node033
- + for node in '$nodes'
- + echo host node033
- + for node in '$nodes'
- + echo host node033
- + for node in '$nodes'
- + echo host node033
- ++ which mpiexec
- + MPIEXEC=/shared/openmpi-1.6.1/gcc/bin/mpiexec
- + NAMD_HOME=/home/mgx/testing/namd-ibverbs/2.9-ibverbs
- + CHARMARGS='+p48 ++nodelist /tmp/197.cmbcluster.nodelist'
- + /home/mgx/testing/namd-ibverbs/2.9-ibverbs/charmrun +p48 ++nodelist /tmp/197.cmbcluster.nodelist ++verbose ++mpiexec ++remote-shell /shared/openmpi-1.6.1/gcc/bin/mpiexec /home/mgx/testing/namd-ibverbs/2.9-ibverbs/namd2
- Charmrun> charmrun started...
- Charmrun> mpiexec started
- Charmrun> node programs all started
- Charmrun> error 0 attaching to node:
- Timeout waiting for node-program to connect
- mpiexec: killing job...
- Charmrun> adding client 0: "127.0.0.1", IP:127.0.0.1
- Charmrun> adding client 1: "127.0.0.1", IP:127.0.0.1
- Charmrun> adding client 2: "127.0.0.1", IP:127.0.0.1
- Charmrun> adding client 3: "127.0.0.1", IP:127.0.0.1
- Charmrun> adding client 4: "127.0.0.1", IP:127.0.0.1
- Charmrun> adding client 5: "127.0.0.1", IP:127.0.0.1
- Charmrun> adding client 6: "127.0.0.1", IP:127.0.0.1
- Charmrun> adding client 7: "127.0.0.1", IP:127.0.0.1
- Charmrun> adding client 8: "127.0.0.1", IP:127.0.0.1
- Charmrun> adding client 9: "127.0.0.1", IP:127.0.0.1
- Charmrun> adding client 10: "127.0.0.1", IP:127.0.0.1
- Charmrun> adding client 11: "127.0.0.1", IP:127.0.0.1
- Charmrun> adding client 12: "127.0.0.1", IP:127.0.0.1
- Charmrun> adding client 13: "127.0.0.1", IP:127.0.0.1
- Charmrun> adding client 14: "127.0.0.1", IP:127.0.0.1
- Charmrun> adding client 15: "127.0.0.1", IP:127.0.0.1
- Charmrun> adding client 16: "127.0.0.1", IP:127.0.0.1
- Charmrun> adding client 17: "127.0.0.1", IP:127.0.0.1
- Charmrun> adding client 18: "127.0.0.1", IP:127.0.0.1
- Charmrun> adding client 19: "127.0.0.1", IP:127.0.0.1
- Charmrun> adding client 20: "127.0.0.1", IP:127.0.0.1
- Charmrun> adding client 21: "127.0.0.1", IP:127.0.0.1
- Charmrun> adding client 22: "127.0.0.1", IP:127.0.0.1
- Charmrun> adding client 23: "127.0.0.1", IP:127.0.0.1
- Charmrun> adding client 24: "127.0.0.1", IP:127.0.0.1
- Charmrun> adding client 25: "127.0.0.1", IP:127.0.0.1
- Charmrun> adding client 26: "127.0.0.1", IP:127.0.0.1
- Charmrun> adding client 27: "127.0.0.1", IP:127.0.0.1
- Charmrun> adding client 28: "127.0.0.1", IP:127.0.0.1
- Charmrun> adding client 29: "127.0.0.1", IP:127.0.0.1
- Charmrun> adding client 30: "127.0.0.1", IP:127.0.0.1
- Charmrun> adding client 31: "127.0.0.1", IP:127.0.0.1
- Charmrun> adding client 32: "127.0.0.1", IP:127.0.0.1
- Charmrun> adding client 33: "127.0.0.1", IP:127.0.0.1
- Charmrun> adding client 34: "127.0.0.1", IP:127.0.0.1
- Charmrun> adding client 35: "127.0.0.1", IP:127.0.0.1
- Charmrun> adding client 36: "127.0.0.1", IP:127.0.0.1
- Charmrun> adding client 37: "127.0.0.1", IP:127.0.0.1
- Charmrun> adding client 38: "127.0.0.1", IP:127.0.0.1
- Charmrun> adding client 39: "127.0.0.1", IP:127.0.0.1
- Charmrun> adding client 40: "127.0.0.1", IP:127.0.0.1
- Charmrun> adding client 41: "127.0.0.1", IP:127.0.0.1
- Charmrun> adding client 42: "127.0.0.1", IP:127.0.0.1
- Charmrun> adding client 43: "127.0.0.1", IP:127.0.0.1
- Charmrun> adding client 44: "127.0.0.1", IP:127.0.0.1
- Charmrun> adding client 45: "127.0.0.1", IP:127.0.0.1
- Charmrun> adding client 46: "127.0.0.1", IP:127.0.0.1
- Charmrun> adding client 47: "127.0.0.1", IP:127.0.0.1
- Charmrun> Charmrun = 172.16.0.34, port = 43775
- Charmrun> IBVERBS version of charmrun
- Charmrun> Sending "$CmiMyNode 172.16.0.34 43775 18443 0" to client 0.
- Charmrun> find the node program "/home/mgx/testing/namd-ibverbs/2.9-ibverbs/namd2" at "/home/mgx" for 0.
- Charmrun> Starting /shared/openmpi-1.6.1/gcc/bin/mpiexec ./charmrun.18443
- Charmrun> Waiting for 0-th client to connect.
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