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misnomer001

ozera outlier proximal pass

misnomer001
Feb 9th, 2020
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  1. allsnps: YES
  2. ## qpAdm version: 1000
  3. seed: 1807238334
  4. read 1073741824 bytes
  5. read 1324255962 bytes
  6. packed geno read OK
  7. end of inpack
  8.  
  9. left pops:
  10. Ukraine_Yamnaya_Ozera
  11. Ukraine_Yamnaya
  12. Ukraine_Globular_Amphora
  13. Geoksyur_EN
  14.  
  15. right pops:
  16. Russia_MA1_HG
  17. Italy_Villabruna
  18. Russia_Kostenki14
  19. Mbuti.DG
  20. Anatolia_N
  21. Czech_Vestonice16
  22. Morocco_Iberomaurusian
  23. Russia_Shamanka_EN.SG
  24. Georgia_Satsurblia.SG
  25. Ganj_Dareh_N
  26. Onge.DG
  27. WSHG
  28. PPN
  29. WEHG
  30.  
  31. 0 Ukraine_Yamnaya_Ozera 1
  32. 1 Ukraine_Yamnaya 1
  33. 2 Ukraine_Globular_Amphora 3
  34. 3 Geoksyur_EN 21
  35. 4 Russia_MA1_HG 1
  36. 5 Italy_Villabruna 1
  37. 6 Russia_Kostenki14 1
  38. 7 Mbuti.DG 5
  39. 8 Anatolia_N 23
  40. 9 Czech_Vestonice16 1
  41. 10 Morocco_Iberomaurusian 6
  42. 11 Russia_Shamanka_EN.SG 10
  43. 12 Georgia_Satsurblia.SG 1
  44. 13 Ganj_Dareh_N 8
  45. 14 Onge.DG 2
  46. 15 WSHG 3
  47. 16 PPN 8
  48. 17 WEHG 36
  49. jackknife block size: 0.050
  50. snps: 1150536 indivs: 132
  51. number of blocks for block jackknife: 713
  52. ## ncols: 1150536
  53. coverage: Ukraine_Yamnaya_Ozera 601867
  54. coverage: Ukraine_Yamnaya 801924
  55. coverage: Ukraine_Globular_Amphora 1036892
  56. coverage: Geoksyur_EN 1018577
  57. coverage: Russia_MA1_HG 805960
  58. coverage: Italy_Villabruna 883779
  59. coverage: Russia_Kostenki14 1068326
  60. coverage: Mbuti.DG 1150376
  61. coverage: Anatolia_N 1136560
  62. coverage: Czech_Vestonice16 732091
  63. coverage: Morocco_Iberomaurusian 1101342
  64. coverage: Russia_Shamanka_EN.SG 1149998
  65. coverage: Georgia_Satsurblia.SG 801311
  66. coverage: Ganj_Dareh_N 1057358
  67. coverage: Onge.DG 1120748
  68. coverage: WSHG 858019
  69. coverage: PPN 835499
  70. coverage: WEHG 1141246
  71. dof (jackknife): 618.282
  72. numsnps used: 1150536
  73. codimension 1
  74. f4info:
  75. f4rank: 2 dof: 11 chisq: 9.717 tail: 0.556051785 dofdiff: 13 chisqdiff: -9.717 taildiff: 1
  76. B:
  77. scale 1.000 1.000
  78. Italy_Villabruna 1.521 -1.271
  79. Russia_Kostenki14 0.795 -0.016
  80. Mbuti.DG 0.721 1.075
  81. Anatolia_N 1.803 -0.365
  82. Czech_Vestonice16 0.993 -0.159
  83. Morocco_Iberomaurusian 0.974 0.164
  84. Russia_Shamanka_EN.SG 0.365 0.479
  85. Georgia_Satsurblia.SG 0.004 0.918
  86. Ganj_Dareh_N 0.032 2.517
  87. Onge.DG 0.436 0.576
  88. WSHG -0.197 0.002
  89. PPN 1.358 -0.140
  90. WEHG 1.464 -1.510
  91. A:
  92. scale 568.186 1154.480
  93. Ukraine_Yamnaya -0.656 -0.810
  94. Ukraine_Globular_Amphora 1.600 0.001
  95. Geoksyur_EN 0.096 1.531
  96.  
  97.  
  98. full rank
  99. f4info:
  100. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 11 chisqdiff: 9.717 taildiff: 0.556051785
  101. B:
  102. scale 956.687 328.608 732.870
  103. Italy_Villabruna -0.629 1.487 -0.937
  104. Russia_Kostenki14 -1.134 0.720 -0.018
  105. Mbuti.DG -1.289 0.790 1.335
  106. Anatolia_N -1.656 1.743 -0.031
  107. Czech_Vestonice16 -0.396 1.125 0.370
  108. Morocco_Iberomaurusian -1.001 1.005 0.443
  109. Russia_Shamanka_EN.SG -0.754 0.387 0.561
  110. Georgia_Satsurblia.SG -0.390 0.106 1.061
  111. Ganj_Dareh_N -1.634 0.108 2.548
  112. Onge.DG -0.631 0.517 0.816
  113. WSHG 0.395 -0.090 0.142
  114. PPN -1.270 1.338 0.182
  115. WEHG -0.444 1.446 -1.163
  116. A:
  117. scale 1.732 1.732 1.732
  118. Ukraine_Yamnaya 1.732 0.000 0.000
  119. Ukraine_Globular_Amphora 0.000 1.732 0.000
  120. Geoksyur_EN 0.000 0.000 1.732
  121.  
  122.  
  123. best coefficients: 0.524 0.198 0.277
  124. Jackknife mean: 0.523711770 0.198538663 0.277749567
  125. std. errors: 0.052 0.032 0.036
  126.  
  127. error covariance (* 1,000,000)
  128. 2676 -1202 -1475
  129. -1202 1028 174
  130. -1475 174 1301
  131.  
  132.  
  133. summ: Ukraine_Yamnaya_Ozera 3 0.556052 0.524 0.199 0.278 2676 -1202 -1475 1028 174 ...
  134. 1301
  135.  
  136. fixed pat wt dof chisq tail prob
  137. 000 0 11 9.717 0.556052 0.524 0.198 0.277
  138. 001 1 12 57.924 5.38094e-08 0.869 0.131 0.000
  139. 010 1 12 48.086 3.01903e-06 0.780 0.000 0.220
  140. 100 1 12 111.186 3.48629e-18 0.000 0.439 0.561
  141. 011 2 13 68.224 1.70148e-09 1.000 0.000 0.000
  142. 101 2 13 568.691 0 0.000 1.000 0.000
  143. 110 2 13 452.565 0 0.000 0.000 1.000
  144. best pat: 000 0.556052 - -
  145. best pat: 010 3.01903e-06 chi(nested): 38.369 p-value for nested model: 5.85452e-10
  146. best pat: 011 1.70148e-09 chi(nested): 20.138 p-value for nested model: 7.20549e-06
  147.  
  148. coeffs: 0.524 0.198 0.277
  149.  
  150. ## dscore:: f_4(Base, Fit, Rbase, right2)
  151. ## genstat:: f_4(Base, Fit, right1, right2)
  152.  
  153. details: Ukraine_Yamnaya Italy_Villabruna -0.000657 -1.446395
  154. details: Ukraine_Globular_Amphora Italy_Villabruna 0.004525 10.991163
  155. details: Geoksyur_EN Italy_Villabruna -0.001278 -3.379917
  156. dscore: Italy_Villabruna f4: 0.000198 Z: 0.530343
  157.  
  158. details: Ukraine_Yamnaya Russia_Kostenki14 -0.001186 -2.993160
  159. details: Ukraine_Globular_Amphora Russia_Kostenki14 0.002192 5.858321
  160. details: Geoksyur_EN Russia_Kostenki14 -0.000025 -0.074920
  161. dscore: Russia_Kostenki14 f4: -0.000194 Z: -0.596932
  162.  
  163. details: Ukraine_Yamnaya Mbuti.DG -0.001348 -3.113891
  164. details: Ukraine_Globular_Amphora Mbuti.DG 0.002405 6.066061
  165. details: Geoksyur_EN Mbuti.DG 0.001822 4.967880
  166. dscore: Mbuti.DG f4: 0.000276 Z: 0.782592
  167.  
  168. details: Ukraine_Yamnaya Anatolia_N -0.001731 -4.075722
  169. details: Ukraine_Globular_Amphora Anatolia_N 0.005304 13.551543
  170. details: Geoksyur_EN Anatolia_N -0.000042 -0.115091
  171. dscore: Anatolia_N f4: 0.000133 Z: 0.379252
  172.  
  173. details: Ukraine_Yamnaya Czech_Vestonice16 -0.000414 -0.958449
  174. details: Ukraine_Globular_Amphora Czech_Vestonice16 0.003424 8.694211
  175. details: Geoksyur_EN Czech_Vestonice16 0.000505 1.387406
  176. dscore: Czech_Vestonice16 f4: 0.000602 Z: 1.685339
  177.  
  178. details: Ukraine_Yamnaya Morocco_Iberomaurusian -0.001046 -2.603819
  179. details: Ukraine_Globular_Amphora Morocco_Iberomaurusian 0.003059 8.188474
  180. details: Geoksyur_EN Morocco_Iberomaurusian 0.000604 1.723540
  181. dscore: Morocco_Iberomaurusian f4: 0.000226 Z: 0.681660
  182.  
  183. details: Ukraine_Yamnaya Russia_Shamanka_EN.SG -0.000789 -2.021840
  184. details: Ukraine_Globular_Amphora Russia_Shamanka_EN.SG 0.001179 3.344022
  185. details: Geoksyur_EN Russia_Shamanka_EN.SG 0.000765 2.278534
  186. dscore: Russia_Shamanka_EN.SG f4: 0.000033 Z: 0.101664
  187.  
  188. details: Ukraine_Yamnaya Georgia_Satsurblia.SG -0.000408 -1.161547
  189. details: Ukraine_Globular_Amphora Georgia_Satsurblia.SG 0.000324 0.937060
  190. details: Geoksyur_EN Georgia_Satsurblia.SG 0.001448 4.591582
  191. dscore: Georgia_Satsurblia.SG f4: 0.000252 Z: 0.858712
  192.  
  193. details: Ukraine_Yamnaya Ganj_Dareh_N -0.001708 -4.354339
  194. details: Ukraine_Globular_Amphora Ganj_Dareh_N 0.000328 0.896426
  195. details: Geoksyur_EN Ganj_Dareh_N 0.003477 10.258066
  196. dscore: Ganj_Dareh_N f4: 0.000134 Z: 0.414895
  197.  
  198. details: Ukraine_Yamnaya Onge.DG -0.000660 -1.633316
  199. details: Ukraine_Globular_Amphora Onge.DG 0.001572 4.199268
  200. details: Geoksyur_EN Onge.DG 0.001113 3.190869
  201. dscore: Onge.DG f4: 0.000274 Z: 0.821496
  202.  
  203. details: Ukraine_Yamnaya WSHG 0.000413 1.114469
  204. details: Ukraine_Globular_Amphora WSHG -0.000273 -0.806396
  205. details: Geoksyur_EN WSHG 0.000194 0.600977
  206. dscore: WSHG f4: 0.000216 Z: 0.719197
  207.  
  208. details: Ukraine_Yamnaya PPN -0.001327 -3.075714
  209. details: Ukraine_Globular_Amphora PPN 0.004073 10.633261
  210. details: Geoksyur_EN PPN 0.000248 0.683668
  211. dscore: PPN f4: 0.000181 Z: 0.514644
  212.  
  213. details: Ukraine_Yamnaya WEHG -0.000465 -1.168233
  214. details: Ukraine_Globular_Amphora WEHG 0.004401 12.102619
  215. details: Geoksyur_EN WEHG -0.001587 -4.759756
  216. dscore: WEHG f4: 0.000189 Z: 0.587611
  217.  
  218. gendstat: Russia_MA1_HG Italy_Villabruna 0.530
  219. gendstat: Russia_MA1_HG Russia_Kostenki14 -0.597
  220. gendstat: Russia_MA1_HG Mbuti.DG 0.783
  221. gendstat: Russia_MA1_HG Anatolia_N 0.379
  222. gendstat: Russia_MA1_HG Czech_Vestonice16 1.685
  223. gendstat: Russia_MA1_HG Morocco_Iberomaurusian 0.682
  224. gendstat: Russia_MA1_HG Russia_Shamanka_EN.SG 0.102
  225. gendstat: Russia_MA1_HG Georgia_Satsurblia.SG 0.859
  226. gendstat: Russia_MA1_HG Ganj_Dareh_N 0.415
  227. gendstat: Russia_MA1_HG Onge.DG 0.821
  228. gendstat: Russia_MA1_HG WSHG 0.719
  229. gendstat: Russia_MA1_HG PPN 0.515
  230. gendstat: Russia_MA1_HG WEHG 0.588
  231. gendstat: Italy_Villabruna Russia_Kostenki14 -1.179
  232. gendstat: Italy_Villabruna Mbuti.DG 0.233
  233. gendstat: Italy_Villabruna Anatolia_N -0.222
  234. gendstat: Italy_Villabruna Czech_Vestonice16 1.129
  235. gendstat: Italy_Villabruna Morocco_Iberomaurusian 0.083
  236. gendstat: Italy_Villabruna Russia_Shamanka_EN.SG -0.510
  237. gendstat: Italy_Villabruna Georgia_Satsurblia.SG 0.148
  238. gendstat: Italy_Villabruna Ganj_Dareh_N -0.196
  239. gendstat: Italy_Villabruna Onge.DG 0.229
  240. gendstat: Italy_Villabruna WSHG 0.054
  241. gendstat: Italy_Villabruna PPN -0.051
  242. gendstat: Italy_Villabruna WEHG -0.037
  243. gendstat: Russia_Kostenki14 Mbuti.DG 1.634
  244. gendstat: Russia_Kostenki14 Anatolia_N 1.213
  245. gendstat: Russia_Kostenki14 Czech_Vestonice16 2.390
  246. gendstat: Russia_Kostenki14 Morocco_Iberomaurusian 1.439
  247. gendstat: Russia_Kostenki14 Russia_Shamanka_EN.SG 0.820
  248. gendstat: Russia_Kostenki14 Georgia_Satsurblia.SG 1.370
  249. gendstat: Russia_Kostenki14 Ganj_Dareh_N 1.160
  250. gendstat: Russia_Kostenki14 Onge.DG 1.603
  251. gendstat: Russia_Kostenki14 WSHG 1.312
  252. gendstat: Russia_Kostenki14 PPN 1.246
  253. gendstat: Russia_Kostenki14 WEHG 1.452
  254. gendstat: Mbuti.DG Anatolia_N -0.600
  255. gendstat: Mbuti.DG Czech_Vestonice16 0.972
  256. gendstat: Mbuti.DG Morocco_Iberomaurusian -0.206
  257. gendstat: Mbuti.DG Russia_Shamanka_EN.SG -1.010
  258. gendstat: Mbuti.DG Georgia_Satsurblia.SG -0.077
  259. gendstat: Mbuti.DG Ganj_Dareh_N -0.573
  260. gendstat: Mbuti.DG Onge.DG -0.004
  261. gendstat: Mbuti.DG WSHG -0.195
  262. gendstat: Mbuti.DG PPN -0.339
  263. gendstat: Mbuti.DG WEHG -0.339
  264. gendstat: Anatolia_N Czech_Vestonice16 1.602
  265. gendstat: Anatolia_N Morocco_Iberomaurusian 0.420
  266. gendstat: Anatolia_N Russia_Shamanka_EN.SG -0.435
  267. gendstat: Anatolia_N Georgia_Satsurblia.SG 0.411
  268. gendstat: Anatolia_N Ganj_Dareh_N 0.007
  269. gendstat: Anatolia_N Onge.DG 0.566
  270. gendstat: Anatolia_N WSHG 0.285
  271. gendstat: Anatolia_N PPN 0.228
  272. gendstat: Anatolia_N WEHG 0.304
  273. gendstat: Czech_Vestonice16 Morocco_Iberomaurusian -1.197
  274. gendstat: Czech_Vestonice16 Russia_Shamanka_EN.SG -1.834
  275. gendstat: Czech_Vestonice16 Georgia_Satsurblia.SG -0.966
  276. gendstat: Czech_Vestonice16 Ganj_Dareh_N -1.548
  277. gendstat: Czech_Vestonice16 Onge.DG -0.998
  278. gendstat: Czech_Vestonice16 WSHG -1.160
  279. gendstat: Czech_Vestonice16 PPN -1.293
  280. gendstat: Czech_Vestonice16 WEHG -1.459
  281. gendstat: Morocco_Iberomaurusian Russia_Shamanka_EN.SG -0.795
  282. gendstat: Morocco_Iberomaurusian Georgia_Satsurblia.SG 0.088
  283. gendstat: Morocco_Iberomaurusian Ganj_Dareh_N -0.378
  284. gendstat: Morocco_Iberomaurusian Onge.DG 0.179
  285. gendstat: Morocco_Iberomaurusian WSHG -0.034
  286. gendstat: Morocco_Iberomaurusian PPN -0.170
  287. gendstat: Morocco_Iberomaurusian WEHG -0.155
  288. gendstat: Russia_Shamanka_EN.SG Georgia_Satsurblia.SG 0.763
  289. gendstat: Russia_Shamanka_EN.SG Ganj_Dareh_N 0.435
  290. gendstat: Russia_Shamanka_EN.SG Onge.DG 1.137
  291. gendstat: Russia_Shamanka_EN.SG WSHG 0.701
  292. gendstat: Russia_Shamanka_EN.SG PPN 0.550
  293. gendstat: Russia_Shamanka_EN.SG WEHG 0.653
  294. gendstat: Georgia_Satsurblia.SG Ganj_Dareh_N -0.423
  295. gendstat: Georgia_Satsurblia.SG Onge.DG 0.072
  296. gendstat: Georgia_Satsurblia.SG WSHG -0.117
  297. gendstat: Georgia_Satsurblia.SG PPN -0.224
  298. gendstat: Georgia_Satsurblia.SG WEHG -0.213
  299. gendstat: Ganj_Dareh_N Onge.DG 0.547
  300. gendstat: Ganj_Dareh_N WSHG 0.289
  301. gendstat: Ganj_Dareh_N PPN 0.181
  302. gendstat: Ganj_Dareh_N WEHG 0.230
  303. gendstat: Onge.DG WSHG -0.199
  304. gendstat: Onge.DG PPN -0.328
  305. gendstat: Onge.DG WEHG -0.328
  306. gendstat: WSHG PPN -0.112
  307. gendstat: WSHG WEHG -0.105
  308. gendstat: PPN WEHG 0.034
  309.  
  310. ##end of qpAdm: 238.128 seconds cpu 1441.354 Mbytes in use
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