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misnomer001

khvalysnk+kotias+parkhai 15og

misnomer001
Dec 29th, 2019
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  1. allsnps: YES
  2. ## qpAdm version: 810
  3. seed: 1754766534
  4.  
  5. left pops:
  6. Steppe_Eneolithic
  7. Russia_Khvalynsk_EN
  8. Georgia_Kotias.SG
  9. Parkhai_EN
  10.  
  11. right pops:
  12. Mbuti.DG
  13. Ust_Ishim.DG
  14. Kostenki14.SG
  15. Russia_MA1.SG
  16. Han.DG
  17. Onge.DG
  18. Papuan.DG
  19. Georgia_Satsurblia.SG
  20. Czech_Vestonice16
  21. Karitiana.DG
  22. Iberia_ElMiron
  23. Ethiopia_4500BP.SG
  24. Natufian
  25. Ganj_Dareh_N
  26.  
  27. 0 Steppe_Eneolithic 3
  28. 1 Russia_Khvalynsk_EN 3
  29. 2 Georgia_Kotias.SG 1
  30. 3 Parkhai_EN 4
  31. 4 Mbuti.DG 5
  32. 5 Ust_Ishim.DG 1
  33. 6 Kostenki14.SG 1
  34. 7 Russia_MA1.SG 1
  35. 8 Han.DG 4
  36. 9 Onge.DG 2
  37. 10 Papuan.DG 15
  38. 11 Georgia_Satsurblia.SG 1
  39. 12 Czech_Vestonice16 1
  40. 13 Karitiana.DG 4
  41. 14 Iberia_ElMiron 1
  42. 15 Ethiopia_4500BP.SG 1
  43. 16 Natufian 6
  44. 17 Ganj_Dareh_N 7
  45. jackknife block size: 0.050
  46. snps: 1150542 indivs: 61
  47. number of blocks for block jackknife: 552
  48. ## ncols: 1150542
  49. coverage: Steppe_Eneolithic 1017729
  50. coverage: Russia_Khvalynsk_EN 758497
  51. coverage: Georgia_Kotias.SG 1149097
  52. coverage: Parkhai_EN 995807
  53. coverage: Mbuti.DG 1150376
  54. coverage: Ust_Ishim.DG 1062044
  55. coverage: Kostenki14.SG 1048972
  56. coverage: Russia_MA1.SG 805960
  57. coverage: Han.DG 1150414
  58. coverage: Onge.DG 1120748
  59. coverage: Papuan.DG 1121459
  60. coverage: Georgia_Satsurblia.SG 801311
  61. coverage: Czech_Vestonice16 732091
  62. coverage: Karitiana.DG 1150373
  63. coverage: Iberia_ElMiron 626974
  64. coverage: Ethiopia_4500BP.SG 1149598
  65. coverage: Natufian 535079
  66. coverage: Ganj_Dareh_N 1029695
  67. dof (jackknife): 467.119
  68. numsnps used: 1150542
  69. codimension 1
  70. f4info:
  71. f4rank: 2 dof: 11 chisq: 6.468 tail: 0.84041653 dofdiff: 13 chisqdiff: -6.468 taildiff: 1
  72. B:
  73. scale 1.000 1.000
  74. Ust_Ishim.DG 0.442 0.250
  75. Kostenki14.SG 0.844 0.489
  76. Russia_MA1.SG 2.020 0.319
  77. Han.DG 0.727 0.327
  78. Onge.DG 0.557 0.066
  79. Papuan.DG 0.611 0.017
  80. Georgia_Satsurblia.SG -0.997 3.217
  81. Czech_Vestonice16 0.938 0.193
  82. Karitiana.DG 1.661 0.473
  83. Iberia_ElMiron 1.226 0.592
  84. Ethiopia_4500BP.SG 0.038 -0.022
  85. Natufian 0.136 -0.003
  86. Ganj_Dareh_N -0.805 -1.234
  87. A:
  88. scale 488.206 1145.099
  89. Russia_Khvalynsk_EN 0.589 -0.055
  90. Georgia_Kotias.SG -1.218 1.276
  91. Parkhai_EN -1.081 -1.170
  92.  
  93.  
  94. full rank
  95. f4info:
  96. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 11 chisqdiff: 6.468 taildiff: 0.84041653
  97. B:
  98. scale 1.000 1.000 1.000
  99. Ust_Ishim.DG 0.455 0.259 0.664
  100. Kostenki14.SG 0.857 0.505 0.718
  101. Russia_MA1.SG 2.016 0.325 -0.420
  102. Han.DG 0.727 0.336 -0.261
  103. Onge.DG 0.551 0.086 -0.241
  104. Papuan.DG 0.608 0.027 -0.185
  105. Georgia_Satsurblia.SG -0.987 3.216 -1.041
  106. Czech_Vestonice16 0.948 0.171 -1.042
  107. Karitiana.DG 1.664 0.490 -0.166
  108. Iberia_ElMiron 1.222 0.595 -0.571
  109. Ethiopia_4500BP.SG 0.037 -0.013 0.036
  110. Natufian 0.152 -0.001 0.119
  111. Ganj_Dareh_N -0.797 -1.220 3.028
  112. A:
  113. scale 472.964 1161.164 4646.440
  114. Russia_Khvalynsk_EN 0.490 -0.301 -1.196
  115. Georgia_Kotias.SG -1.253 1.087 -1.056
  116. Parkhai_EN -1.091 -1.315 -0.674
  117.  
  118.  
  119. best coefficients: 0.662 0.177 0.161
  120. Jackknife mean: 0.661947823 0.176601789 0.161450389
  121. std. errors: 0.023 0.031 0.033
  122.  
  123. error covariance (* 1000000)
  124. 534 -211 -323
  125. -211 967 -756
  126. -323 -756 1079
  127.  
  128.  
  129. summ: Steppe_Eneolithic 3 0.840417 0.662 0.177 0.161 534 -211 -323 967 -756 1079
  130.  
  131. fixed pat wt dof chisq tail prob
  132. 000 0 11 6.468 0.840417 0.662 0.177 0.161
  133. 001 1 12 27.635 0.00625361 0.709 0.291 -0.000
  134. 010 1 12 37.939 0.000157106 0.709 -0.000 0.291
  135. 100 1 12 321.615 0 0.000 2.202 -1.202 infeasible
  136. 011 2 13 152.630 6.08084e-26 1.000 -0.000 -0.000
  137. 101 2 13 382.302 0 0.000 1.000 -0.000
  138. 110 2 13 636.339 0 0.000 -0.000 1.000
  139. best pat: 000 0.840417 - -
  140. best pat: 001 0.00625361 chi(nested): 21.167 p-value for nested model: 4.20865e-06
  141. best pat: 011 6.08084e-26 chi(nested): 124.995 p-value for nested model: 5.10216e-29
  142.  
  143. coeffs: 0.662 0.177 0.161
  144.  
  145. ## dscore:: f_4(Base, Fit, Rbase, right2)
  146. ## genstat:: f_4(Base, Fit, right1, right2)
  147.  
  148. details: Russia_Khvalynsk_EN Ust_Ishim.DG 0.000232 0.778385
  149. details: Georgia_Kotias.SG Ust_Ishim.DG -0.001150 -2.596648
  150. details: Parkhai_EN Ust_Ishim.DG -0.001483 -4.208311
  151. dscore: Ust_Ishim.DG f4: -0.000289 Z: -1.116322
  152.  
  153. details: Russia_Khvalynsk_EN Kostenki14.SG 0.000534 1.533266
  154. details: Georgia_Kotias.SG Kostenki14.SG -0.002014 -4.272307
  155. details: Parkhai_EN Kostenki14.SG -0.002693 -7.632361
  156. dscore: Kostenki14.SG f4: -0.000437 Z: -1.476177
  157.  
  158. details: Russia_Khvalynsk_EN Russia_MA1.SG 0.002128 5.942049
  159. details: Georgia_Kotias.SG Russia_MA1.SG -0.004959 -10.410470
  160. details: Parkhai_EN Russia_MA1.SG -0.004975 -14.519487
  161. dscore: Russia_MA1.SG f4: -0.000270 Z: -0.909138
  162.  
  163. details: Russia_Khvalynsk_EN Han.DG 0.000717 2.566218
  164. details: Georgia_Kotias.SG Han.DG -0.001603 -4.330590
  165. details: Parkhai_EN Han.DG -0.002073 -7.684618
  166. dscore: Han.DG f4: -0.000143 Z: -0.621332
  167.  
  168. details: Russia_Khvalynsk_EN Onge.DG 0.000577 1.958710
  169. details: Georgia_Kotias.SG Onge.DG -0.001374 -3.314535
  170. details: Parkhai_EN Onge.DG -0.001390 -4.591356
  171. dscore: Onge.DG f4: -0.000085 Z: -0.330397
  172.  
  173. details: Russia_Khvalynsk_EN Papuan.DG 0.000651 2.190019
  174. details: Georgia_Kotias.SG Papuan.DG -0.001592 -4.097002
  175. details: Parkhai_EN Papuan.DG -0.001449 -5.407809
  176. dscore: Papuan.DG f4: -0.000084 Z: -0.348782
  177.  
  178. details: Russia_Khvalynsk_EN Georgia_Satsurblia.SG -0.001577 -4.836438
  179. details: Georgia_Kotias.SG Georgia_Satsurblia.SG 0.005878 11.740392
  180. details: Parkhai_EN Georgia_Satsurblia.SG -0.001221 -3.800387
  181. dscore: Georgia_Satsurblia.SG f4: -0.000203 Z: -0.752528
  182.  
  183. details: Russia_Khvalynsk_EN Czech_Vestonice16 0.001243 3.719671
  184. details: Georgia_Kotias.SG Czech_Vestonice16 -0.002119 -4.964213
  185. details: Parkhai_EN Czech_Vestonice16 -0.002237 -6.868314
  186. dscore: Czech_Vestonice16 f4: 0.000087 Z: 0.315433
  187.  
  188. details: Russia_Khvalynsk_EN Karitiana.DG 0.001635 5.087514
  189. details: Georgia_Kotias.SG Karitiana.DG -0.003958 -9.431771
  190. details: Parkhai_EN Karitiana.DG -0.004411 -13.549215
  191. dscore: Karitiana.DG f4: -0.000328 Z: -1.241657
  192.  
  193. details: Russia_Khvalynsk_EN Iberia_ElMiron 0.001263 3.919025
  194. details: Georgia_Kotias.SG Iberia_ElMiron -0.002566 -6.759997
  195. details: Parkhai_EN Iberia_ElMiron -0.003427 -11.738249
  196. dscore: Iberia_ElMiron f4: -0.000170 Z: -0.647495
  197.  
  198. details: Russia_Khvalynsk_EN Ethiopia_4500BP.SG 0.000030 0.124491
  199. details: Georgia_Kotias.SG Ethiopia_4500BP.SG -0.000119 -0.370277
  200. details: Parkhai_EN Ethiopia_4500BP.SG -0.000088 -0.370566
  201. dscore: Ethiopia_4500BP.SG f4: -0.000015 Z: -0.073716
  202.  
  203. details: Russia_Khvalynsk_EN Natufian 0.000105 0.400380
  204. details: Georgia_Kotias.SG Natufian -0.000456 -1.569642
  205. details: Parkhai_EN Natufian -0.000392 -1.684668
  206. dscore: Natufian f4: -0.000074 Z: -0.347289
  207.  
  208. details: Russia_Khvalynsk_EN Ganj_Dareh_N -0.001291 -4.799345
  209. details: Georgia_Kotias.SG Ganj_Dareh_N 0.000260 0.678653
  210. details: Parkhai_EN Ganj_Dareh_N 0.002753 9.239575
  211. dscore: Ganj_Dareh_N f4: -0.000365 Z: -1.574055
  212.  
  213. gendstat: Mbuti.DG Ust_Ishim.DG -1.116
  214. gendstat: Mbuti.DG Kostenki14.SG -1.476
  215. gendstat: Mbuti.DG Russia_MA1.SG -0.909
  216. gendstat: Mbuti.DG Han.DG -0.621
  217. gendstat: Mbuti.DG Onge.DG -0.330
  218. gendstat: Mbuti.DG Papuan.DG -0.349
  219. gendstat: Mbuti.DG Georgia_Satsurblia.SG -0.753
  220. gendstat: Mbuti.DG Czech_Vestonice16 0.315
  221. gendstat: Mbuti.DG Karitiana.DG -1.242
  222. gendstat: Mbuti.DG Iberia_ElMiron -0.647
  223. gendstat: Mbuti.DG Ethiopia_4500BP.SG -0.074
  224. gendstat: Mbuti.DG Natufian -0.347
  225. gendstat: Mbuti.DG Ganj_Dareh_N -1.574
  226. gendstat: Ust_Ishim.DG Kostenki14.SG -0.451
  227. gendstat: Ust_Ishim.DG Russia_MA1.SG 0.055
  228. gendstat: Ust_Ishim.DG Han.DG 0.560
  229. gendstat: Ust_Ishim.DG Onge.DG 0.708
  230. gendstat: Ust_Ishim.DG Papuan.DG 0.736
  231. gendstat: Ust_Ishim.DG Georgia_Satsurblia.SG 0.254
  232. gendstat: Ust_Ishim.DG Czech_Vestonice16 1.178
  233. gendstat: Ust_Ishim.DG Karitiana.DG -0.132
  234. gendstat: Ust_Ishim.DG Iberia_ElMiron 0.380
  235. gendstat: Ust_Ishim.DG Ethiopia_4500BP.SG 0.895
  236. gendstat: Ust_Ishim.DG Natufian 0.722
  237. gendstat: Ust_Ishim.DG Ganj_Dareh_N -0.260
  238. gendstat: Kostenki14.SG Russia_MA1.SG 0.467
  239. gendstat: Kostenki14.SG Han.DG 0.997
  240. gendstat: Kostenki14.SG Onge.DG 1.087
  241. gendstat: Kostenki14.SG Papuan.DG 1.155
  242. gendstat: Kostenki14.SG Georgia_Satsurblia.SG 0.649
  243. gendstat: Kostenki14.SG Czech_Vestonice16 1.576
  244. gendstat: Kostenki14.SG Karitiana.DG 0.333
  245. gendstat: Kostenki14.SG Iberia_ElMiron 0.858
  246. gendstat: Kostenki14.SG Ethiopia_4500BP.SG 1.255
  247. gendstat: Kostenki14.SG Natufian 1.173
  248. gendstat: Kostenki14.SG Ganj_Dareh_N 0.237
  249. gendstat: Russia_MA1.SG Han.DG 0.427
  250. gendstat: Russia_MA1.SG Onge.DG 0.552
  251. gendstat: Russia_MA1.SG Papuan.DG 0.592
  252. gendstat: Russia_MA1.SG Georgia_Satsurblia.SG 0.186
  253. gendstat: Russia_MA1.SG Czech_Vestonice16 1.069
  254. gendstat: Russia_MA1.SG Karitiana.DG -0.190
  255. gendstat: Russia_MA1.SG Iberia_ElMiron 0.298
  256. gendstat: Russia_MA1.SG Ethiopia_4500BP.SG 0.752
  257. gendstat: Russia_MA1.SG Natufian 0.594
  258. gendstat: Russia_MA1.SG Ganj_Dareh_N -0.304
  259. gendstat: Han.DG Onge.DG 0.249
  260. gendstat: Han.DG Papuan.DG 0.258
  261. gendstat: Han.DG Georgia_Satsurblia.SG -0.197
  262. gendstat: Han.DG Czech_Vestonice16 0.768
  263. gendstat: Han.DG Karitiana.DG -0.828
  264. gendstat: Han.DG Iberia_ElMiron -0.094
  265. gendstat: Han.DG Ethiopia_4500BP.SG 0.478
  266. gendstat: Han.DG Natufian 0.259
  267. gendstat: Han.DG Ganj_Dareh_N -0.891
  268. gendstat: Onge.DG Papuan.DG 0.003
  269. gendstat: Onge.DG Georgia_Satsurblia.SG -0.353
  270. gendstat: Onge.DG Czech_Vestonice16 0.523
  271. gendstat: Onge.DG Karitiana.DG -0.843
  272. gendstat: Onge.DG Iberia_ElMiron -0.268
  273. gendstat: Onge.DG Ethiopia_4500BP.SG 0.234
  274. gendstat: Onge.DG Natufian 0.037
  275. gendstat: Onge.DG Ganj_Dareh_N -1.040
  276. gendstat: Papuan.DG Georgia_Satsurblia.SG -0.370
  277. gendstat: Papuan.DG Czech_Vestonice16 0.554
  278. gendstat: Papuan.DG Karitiana.DG -0.891
  279. gendstat: Papuan.DG Iberia_ElMiron -0.279
  280. gendstat: Papuan.DG Ethiopia_4500BP.SG 0.243
  281. gendstat: Papuan.DG Natufian 0.036
  282. gendstat: Papuan.DG Ganj_Dareh_N -1.088
  283. gendstat: Georgia_Satsurblia.SG Czech_Vestonice16 0.853
  284. gendstat: Georgia_Satsurblia.SG Karitiana.DG -0.377
  285. gendstat: Georgia_Satsurblia.SG Iberia_ElMiron 0.097
  286. gendstat: Georgia_Satsurblia.SG Ethiopia_4500BP.SG 0.607
  287. gendstat: Georgia_Satsurblia.SG Natufian 0.393
  288. gendstat: Georgia_Satsurblia.SG Ganj_Dareh_N -0.554
  289. gendstat: Czech_Vestonice16 Karitiana.DG -1.262
  290. gendstat: Czech_Vestonice16 Iberia_ElMiron -0.839
  291. gendstat: Czech_Vestonice16 Ethiopia_4500BP.SG -0.326
  292. gendstat: Czech_Vestonice16 Natufian -0.535
  293. gendstat: Czech_Vestonice16 Ganj_Dareh_N -1.424
  294. gendstat: Karitiana.DG Iberia_ElMiron 0.512
  295. gendstat: Karitiana.DG Ethiopia_4500BP.SG 1.038
  296. gendstat: Karitiana.DG Natufian 0.822
  297. gendstat: Karitiana.DG Ganj_Dareh_N -0.128
  298. gendstat: Iberia_ElMiron Ethiopia_4500BP.SG 0.498
  299. gendstat: Iberia_ElMiron Natufian 0.326
  300. gendstat: Iberia_ElMiron Ganj_Dareh_N -0.652
  301. gendstat: Ethiopia_4500BP.SG Natufian -0.216
  302. gendstat: Ethiopia_4500BP.SG Ganj_Dareh_N -1.244
  303. gendstat: Natufian Ganj_Dareh_N -1.089
  304.  
  305. ## end of run
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