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misnomer001

hajji_ia = hajjiC + aygrzhal

misnomer001
Aug 7th, 2022
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  1. qpAdm: parameter file: parqpadm
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. popleft: left
  5. popright: right
  6. details: YES
  7. allsnps: YES
  8. inbreed: NO
  9. oldallsnps: NO
  10. S1: newpush
  11. S1X: newpush
  12. indivname: newpush.ind
  13. snpname: newpush.snp
  14. genotypename: newpush.geno
  15. ## qpAdm version: 1520
  16. seed: 2044590162
  17. inbreed set NO
  18. inbreed set NO
  19. tmp: /tmp/fsx.7945
  20.  
  21. left pops:
  22. Iran_IA_HajjiFiruz
  23. Iran_HajjiFiruz_C
  24. Kyrgyzstan_Aygirdjal_BA
  25.  
  26. right pops:
  27. Mbuti.DG
  28. Serbia_IronGates_Mesolithic
  29. CHG
  30. EHG
  31. Sunghir
  32. China_YR_MN
  33. Turkey_Boncuklu_N
  34. Russia_Yana_UP.SG
  35. Russia_Shamanka_Eneolithic.SG
  36. ONG.SG
  37. WSHG
  38. Turkey_N
  39. Tarim_EMBA1
  40.  
  41. codimension 1
  42. f4info:
  43. f4rank: 1 dof: 11 chisq: 11.022 tail: 0.441437361 dofdiff: 13 chisqdiff: -11.022 taildiff: 1
  44. B:
  45. scale 1.000
  46. Serbia_IronGates_Mesolithic 0.156
  47. CHG -0.064
  48. EHG 1.160
  49. Sunghir 0.218
  50. China_YR_MN 0.566
  51. Turkey_Boncuklu_N -0.674
  52. Russia_Yana_UP.SG 0.512
  53. Russia_Shamanka_Eneolithic.SG 0.690
  54. ONG.SG 0.494
  55. WSHG 1.711
  56. Turkey_N -0.919
  57. Tarim_EMBA1 2.247
  58. A:
  59. scale 104.036
  60. Iran_HajjiFiruz_C -0.341
  61. Kyrgyzstan_Aygirdjal_BA 1.372
  62.  
  63.  
  64. full rank
  65. f4info:
  66. f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 11 chisqdiff: 11.022 taildiff: 0.441437361
  67. B:
  68. scale 244.705 77.951
  69. Serbia_IronGates_Mesolithic -0.453 0.090
  70. CHG -0.307 -0.142
  71. EHG -1.602 1.024
  72. Sunghir -0.534 0.151
  73. China_YR_MN -0.616 0.545
  74. Turkey_Boncuklu_N 0.083 -0.799
  75. Russia_Yana_UP.SG -0.996 0.399
  76. Russia_Shamanka_Eneolithic.SG -0.872 0.624
  77. ONG.SG -0.707 0.440
  78. WSHG -1.795 1.659
  79. Turkey_N 0.572 -0.972
  80. Tarim_EMBA1 -1.631 2.351
  81. A:
  82. scale 1.414 1.414
  83. Iran_HajjiFiruz_C 1.414 0.000
  84. Kyrgyzstan_Aygirdjal_BA 0.000 1.414
  85.  
  86.  
  87. best coefficients: 0.801 0.199
  88. totmean: 0.801 0.199
  89. boot mean: 0.801 0.199
  90. std. errors: 0.029 0.029
  91.  
  92. error covariance (* 1,000,000)
  93. 850 -850
  94. -850 850
  95.  
  96.  
  97. summ: Iran_IA_HajjiFiruz 2 0.441437 0.801 0.199 850 -850 850
  98.  
  99. fixed pat wt dof chisq tail prob
  100. 00 0 11 11.022 0.441437 0.801 0.199
  101. 01 1 12 55.018 1.79641e-07 1.000 0.000
  102. 10 1 12 532.673 0 0.000 1.000
  103. best pat: 00 0.441437 - -
  104. best pat: 01 1.79641e-07 chi(nested): 43.996 p-value for nested model: 3.28991e-11
  105.  
  106. coeffs: 0.801 0.199
  107.  
  108. ## dscore:: f_4(Base, Fit, Rbase, right2)
  109. ## genstat:: f_4(Base, Fit, right1, right2)
  110.  
  111. details: Iran_HajjiFiruz_C Serbia_IronGates_Mesolithic -0.001851 -1.243117
  112. details: Kyrgyzstan_Aygirdjal_BA Serbia_IronGates_Mesolithic 0.001152 0.738431
  113. dscore: Serbia_IronGates_Mesolithic f4: -0.001253 Z: -0.886880
  114.  
  115. details: Iran_HajjiFiruz_C CHG -0.001253 -0.706269
  116. details: Kyrgyzstan_Aygirdjal_BA CHG -0.001821 -1.002259
  117. dscore: CHG f4: -0.001366 Z: -0.809651
  118.  
  119. details: Iran_HajjiFiruz_C EHG -0.006545 -3.990818
  120. details: Kyrgyzstan_Aygirdjal_BA EHG 0.013135 7.094097
  121. dscore: EHG f4: -0.002628 Z: -1.666635
  122.  
  123. details: Iran_HajjiFiruz_C Sunghir -0.002182 -1.394157
  124. details: Kyrgyzstan_Aygirdjal_BA Sunghir 0.001936 1.163541
  125. dscore: Sunghir f4: -0.001362 Z: -0.917237
  126.  
  127. details: Iran_HajjiFiruz_C China_YR_MN -0.002518 -1.533604
  128. details: Kyrgyzstan_Aygirdjal_BA China_YR_MN 0.006988 4.036639
  129. dscore: China_YR_MN f4: -0.000626 Z: -0.398784
  130.  
  131. details: Iran_HajjiFiruz_C Turkey_Boncuklu_N 0.000339 0.205415
  132. details: Kyrgyzstan_Aygirdjal_BA Turkey_Boncuklu_N -0.010246 -6.037622
  133. dscore: Turkey_Boncuklu_N f4: -0.001768 Z: -1.123676
  134.  
  135. details: Iran_HajjiFiruz_C Russia_Yana_UP.SG -0.004072 -2.515271
  136. details: Kyrgyzstan_Aygirdjal_BA Russia_Yana_UP.SG 0.005121 2.987031
  137. dscore: Russia_Yana_UP.SG f4: -0.002242 Z: -1.457371
  138.  
  139. details: Iran_HajjiFiruz_C Russia_Shamanka_Eneolithic.SG -0.003564 -2.446668
  140. details: Kyrgyzstan_Aygirdjal_BA Russia_Shamanka_Eneolithic.SG 0.008009 5.013397
  141. dscore: Russia_Shamanka_Eneolithic.SG f4: -0.001260 Z: -0.905445
  142.  
  143. details: Iran_HajjiFiruz_C ONG.SG -0.002887 -1.872827
  144. details: Kyrgyzstan_Aygirdjal_BA ONG.SG 0.005639 3.543791
  145. dscore: ONG.SG f4: -0.001190 Z: -0.816947
  146.  
  147. details: Iran_HajjiFiruz_C WSHG -0.007336 -4.010987
  148. details: Kyrgyzstan_Aygirdjal_BA WSHG 0.021282 10.669830
  149. dscore: WSHG f4: -0.001640 Z: -0.935915
  150.  
  151. details: Iran_HajjiFiruz_C Turkey_N 0.002337 1.684496
  152. details: Kyrgyzstan_Aygirdjal_BA Turkey_N -0.012472 -8.449157
  153. dscore: Turkey_N f4: -0.000610 Z: -0.458642
  154.  
  155. details: Iran_HajjiFiruz_C Tarim_EMBA1 -0.006667 -3.816389
  156. details: Kyrgyzstan_Aygirdjal_BA Tarim_EMBA1 0.030158 15.270445
  157. dscore: Tarim_EMBA1 f4: 0.000663 Z: 0.395680
  158.  
  159. gendstat: Mbuti.DG Serbia_IronGates_Mesolithic -0.887
  160. gendstat: Mbuti.DG CHG -0.810
  161. gendstat: Mbuti.DG EHG -1.667
  162. gendstat: Mbuti.DG Sunghir -0.917
  163. gendstat: Mbuti.DG China_YR_MN -0.399
  164. gendstat: Mbuti.DG Turkey_Boncuklu_N -1.124
  165. gendstat: Mbuti.DG Russia_Yana_UP.SG -1.457
  166. gendstat: Mbuti.DG Russia_Shamanka_Eneolithic.SG -0.905
  167. gendstat: Mbuti.DG ONG.SG -0.817
  168. gendstat: Mbuti.DG WSHG -0.936
  169. gendstat: Mbuti.DG Turkey_N -0.459
  170. gendstat: Mbuti.DG Tarim_EMBA1 0.396
  171. gendstat: Serbia_IronGates_Mesolithic CHG -0.068
  172. gendstat: Serbia_IronGates_Mesolithic EHG -1.150
  173. gendstat: Serbia_IronGates_Mesolithic Sunghir -0.085
  174. gendstat: Serbia_IronGates_Mesolithic China_YR_MN 0.431
  175. gendstat: Serbia_IronGates_Mesolithic Turkey_Boncuklu_N -0.404
  176. gendstat: Serbia_IronGates_Mesolithic Russia_Yana_UP.SG -0.700
  177. gendstat: Serbia_IronGates_Mesolithic Russia_Shamanka_Eneolithic.SG -0.005
  178. gendstat: Serbia_IronGates_Mesolithic ONG.SG 0.047
  179. gendstat: Serbia_IronGates_Mesolithic WSHG -0.262
  180. gendstat: Serbia_IronGates_Mesolithic Turkey_N 0.613
  181. gendstat: Serbia_IronGates_Mesolithic Tarim_EMBA1 1.298
  182. gendstat: CHG EHG -0.735
  183. gendstat: CHG Sunghir 0.002
  184. gendstat: CHG China_YR_MN 0.402
  185. gendstat: CHG Turkey_Boncuklu_N -0.228
  186. gendstat: CHG Russia_Yana_UP.SG -0.477
  187. gendstat: CHG Russia_Shamanka_Eneolithic.SG 0.061
  188. gendstat: CHG ONG.SG 0.101
  189. gendstat: CHG WSHG -0.143
  190. gendstat: CHG Turkey_N 0.476
  191. gendstat: CHG Tarim_EMBA1 1.111
  192. gendstat: EHG Sunghir 0.829
  193. gendstat: EHG China_YR_MN 1.293
  194. gendstat: EHG Turkey_Boncuklu_N 0.547
  195. gendstat: EHG Russia_Yana_UP.SG 0.247
  196. gendstat: EHG Russia_Shamanka_Eneolithic.SG 0.986
  197. gendstat: EHG ONG.SG 0.943
  198. gendstat: EHG WSHG 0.688
  199. gendstat: EHG Turkey_N 1.511
  200. gendstat: EHG Tarim_EMBA1 2.398
  201. gendstat: Sunghir China_YR_MN 0.463
  202. gendstat: Sunghir Turkey_Boncuklu_N -0.272
  203. gendstat: Sunghir Russia_Yana_UP.SG -0.590
  204. gendstat: Sunghir Russia_Shamanka_Eneolithic.SG 0.069
  205. gendstat: Sunghir ONG.SG 0.119
  206. gendstat: Sunghir WSHG -0.164
  207. gendstat: Sunghir Turkey_N 0.582
  208. gendstat: Sunghir Tarim_EMBA1 1.249
  209. gendstat: China_YR_MN Turkey_Boncuklu_N -0.670
  210. gendstat: China_YR_MN Russia_Yana_UP.SG -1.021
  211. gendstat: China_YR_MN Russia_Shamanka_Eneolithic.SG -0.589
  212. gendstat: China_YR_MN ONG.SG -0.408
  213. gendstat: China_YR_MN WSHG -0.590
  214. gendstat: China_YR_MN Turkey_N 0.011
  215. gendstat: China_YR_MN Tarim_EMBA1 0.802
  216. gendstat: Turkey_Boncuklu_N Russia_Yana_UP.SG -0.294
  217. gendstat: Turkey_Boncuklu_N Russia_Shamanka_Eneolithic.SG 0.327
  218. gendstat: Turkey_Boncuklu_N ONG.SG 0.374
  219. gendstat: Turkey_Boncuklu_N WSHG 0.071
  220. gendstat: Turkey_Boncuklu_N Turkey_N 1.132
  221. gendstat: Turkey_Boncuklu_N Tarim_EMBA1 1.373
  222. gendstat: Russia_Yana_UP.SG Russia_Shamanka_Eneolithic.SG 0.706
  223. gendstat: Russia_Yana_UP.SG ONG.SG 0.699
  224. gendstat: Russia_Yana_UP.SG WSHG 0.347
  225. gendstat: Russia_Yana_UP.SG Turkey_N 1.139
  226. gendstat: Russia_Yana_UP.SG Tarim_EMBA1 1.780
  227. gendstat: Russia_Shamanka_Eneolithic.SG ONG.SG 0.058
  228. gendstat: Russia_Shamanka_Eneolithic.SG WSHG -0.242
  229. gendstat: Russia_Shamanka_Eneolithic.SG Turkey_N 0.496
  230. gendstat: Russia_Shamanka_Eneolithic.SG Tarim_EMBA1 1.375
  231. gendstat: ONG.SG WSHG -0.264
  232. gendstat: ONG.SG Turkey_N 0.426
  233. gendstat: ONG.SG Tarim_EMBA1 1.218
  234. gendstat: WSHG Turkey_N 0.627
  235. gendstat: WSHG Tarim_EMBA1 1.581
  236. gendstat: Turkey_N Tarim_EMBA1 0.794
  237.  
  238. removing /tmp/fsx.7945
  239. ##end of qpAdm: 1.946 seconds cpu 0.791 Mbytes in use
  240.  
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