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- == Error == utf-8
- Traceback (most recent call last):
- File "/usr/local/share/spades/spades_pipeline/support.py", line 142, in check_file_not_empty
- if next(reads_iterator, None) is None:
- File "/usr/local/share/spades/spades_pipeline/common/SeqIO.py", line 119, in parse_fastq
- while not reader.EOF():
- File "/usr/local/share/spades/spades_pipeline/common/SeqIO.py", line 69, in EOF
- return self.Top() == ""
- File "/usr/local/share/spades/spades_pipeline/common/SeqIO.py", line 36, in Top
- self.FillCash()
- File "/usr/local/share/spades/spades_pipeline/common/SeqIO.py", line 30, in FillCash
- self.cash = self.handler.readline()
- File "/usr/local/lib/python3.9/codecs.py", line 705, in readline
- return self.reader.readline(size)
- File "/usr/local/lib/python3.9/codecs.py", line 558, in readline
- data = self.read(readsize, firstline=True)
- File "/usr/local/lib/python3.9/codecs.py", line 504, in read
- newchars, decodedbytes = self.decode(data, self.errors)
- UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid start byte
- In case you have troubles running SPAdes, you can write to [email protected]
- or report an issue on our GitHub repository github.com/ablab/spades
- Please provide us with params.txt and spades.log files from the output directory.
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