[username@hostname ~]$ echo $?
0

[username@hostname rose]$ python ROSE_main.py -g HG18 -i HG18_MM1S_MED1.gff -r MM1S_MED1.hg18.bwt.sorted.bam -c MM1S_WCE.hg18.bwt.sorted.bam -o example -s 12500 -t 2500
USING HG18_MM1S_MED1.gff AS THE INPUT GFF
USING HG18 AS THE GENOME
MAKING START DICT
LOADING IN GFF REGIONS
CHECKING INPUT TO MAKE SURE EACH REGION HAS A UNIQUE IDENTIFIER
REFERENCE COLLECTION PASSES QC
STITCHING REGIONS TOGETHER
PERFORMING REGION STITCHING
REMOVED 7865 LOCI BECAUSE THEY WERE CONTAINED BY A TSS

...

315 root      RT   0     0    0    0 S 100.0  0.0   1801:10 migration/104
    42 root      RT   0     0    0    0 S 100.0  0.0   2023:48 migration/13
   177 root      RT   0     0    0    0 S 100.0  0.0   1622:39 migration/58
    51 root      RT   0     0    0    0 S 100.0  0.0   1820:09 migration/16
    66 root      RT   0     0    0    0 R 100.0  0.0   2135:56 migration/21
   462 root      RT   0     0    0    0 R 100.0  0.0   1696:18 migration/153
    63 root      RT   0     0    0    0 S 100.0  0.0   1735:34 migration/20
    54 root      RT   0     0    0    0 S 100.0  0.0   1844:20 migration/17
   429 root      RT   0     0    0    0 S 100.0  0.0   1690:33 migration/142
 11471 gdm       20   0  374m  12m 4544 R 117.1  0.0 934:51.45 gnome-settings-
   318 root      RT   0     0    0    0 S 100.0  0.0   1774:44 migration/105

ps -lf $(pgrep python)