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Error installing OpenMRS standalone

dedrickt
Sep 24th, 2020 (edited)
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  1. Attempting to load properties file in current directory: openmrs-standalone-runtime.properties
  2. Using runtime properties file: openmrs-standalone-runtime.properties
  3. Sep 24, 2020 12:38:21 PM org.apache.coyote.AbstractProtocol init
  4. INFO: Initializing ProtocolHandler ["http-bio-8081"]
  5. Sep 24, 2020 12:38:21 PM org.apache.catalina.startup.Embedded startInternal
  6. INFO: Starting tomcat server
  7. Sep 24, 2020 12:38:21 PM org.apache.catalina.core.StandardEngine startInternal
  8. INFO: Starting Servlet Engine: Apache Tomcat/7.0.100
  9. Sep 24, 2020 12:38:22 PM org.apache.catalina.deploy.WebXml setVersion
  10. WARNING: Unknown version string [4.0]. Default version will be used.
  11. Sep 24, 2020 12:38:24 PM org.apache.catalina.startup.TldConfig execute
  12. INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time.
  13. Sep 24, 2020 12:38:25 PM org.apache.catalina.core.ApplicationContext log
  14. INFO: Initializing log4j from [classpath:log4j.xml]
  15. INFO - Listener.contextInitialized(173) |2020-09-24 12:38:25,470| Using runtime properties file: openmrs-standalone-runtime.properties
  16. ERROR - MarkerIgnoringBase.error(159) |2020-09-24 12:38:29,820| Failed to obtain JDBC connection
  17. java.lang.RuntimeException: Error occurred while trying to get the updates needed for the database. Unable to get a connection to the database. Please check your openmrs runtime properties file and make sure you have the correct connection.username and connection.password set
  18. at org.openmrs.util.DatabaseUpdater.getUnrunDatabaseChanges(DatabaseUpdater.java:630)
  19. at org.openmrs.util.DatabaseUpdater.getUnrunDatabaseChanges(DatabaseUpdater.java:587)
  20. at org.openmrs.util.DatabaseUpdater.updatesRequired(DatabaseUpdater.java:252)
  21. at org.openmrs.web.Listener.setupNeeded(Listener.java:217)
  22. at org.openmrs.web.Listener.contextInitialized(Listener.java:179)
  23. at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:5197)
  24. at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5720)
  25. at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
  26. at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1705)
  27. at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1695)
  28. at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
  29. at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1130)
  30. at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:630)
  31. at java.base/java.lang.Thread.run(Thread.java:832)
  32. Caused by: java.lang.Exception: Unable to get a connection to the database. Please check your openmrs runtime properties file and make sure you have the correct connection.username and connection.password set
  33. at org.openmrs.util.DatabaseUpdater.getLiquibase(DatabaseUpdater.java:361)
  34. at org.openmrs.util.DatabaseUpdater.getUnrunDatabaseChanges(DatabaseUpdater.java:615)
  35. ... 13 more
  36. Caused by: com.mysql.jdbc.exceptions.jdbc4.MySQLNonTransientConnectionException: Could not create connection to database server. Attempted reconnect 3 times. Giving up.
  37. at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
  38. at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
  39. at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
  40. at java.base/java.lang.reflect.Constructor.newInstanceWithCaller(Constructor.java:500)
  41. at java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:481)
  42. at com.mysql.jdbc.Util.handleNewInstance(Util.java:425)
  43. at com.mysql.jdbc.Util.getInstance(Util.java:408)
  44. at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:919)
  45. at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:898)
  46. at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:887)
  47. at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:861)
  48. at com.mysql.jdbc.ConnectionImpl.connectWithRetries(ConnectionImpl.java:2094)
  49. at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2019)
  50. at com.mysql.jdbc.ConnectionImpl.<init>(ConnectionImpl.java:776)
  51. at com.mysql.jdbc.JDBC4Connection.<init>(JDBC4Connection.java:47)
  52. at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
  53. at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
  54. at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
  55. at java.base/java.lang.reflect.Constructor.newInstanceWithCaller(Constructor.java:500)
  56. at java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:481)
  57. at com.mysql.jdbc.Util.handleNewInstance(Util.java:425)
  58. at com.mysql.jdbc.ConnectionImpl.getInstance(ConnectionImpl.java:386)
  59. at com.mysql.jdbc.NonRegisteringDriver.connect(NonRegisteringDriver.java:330)
  60. at java.sql/java.sql.DriverManager.getConnection(DriverManager.java:677)
  61. at java.sql/java.sql.DriverManager.getConnection(DriverManager.java:228)
  62. at org.openmrs.util.DatabaseUpdater.getConnection(DatabaseUpdater.java:423)
  63. at org.openmrs.util.DatabaseUpdater.getLiquibase(DatabaseUpdater.java:358)
  64. ... 14 more
  65. Caused by: com.mysql.jdbc.exceptions.jdbc4.MySQLNonTransientConnectionException: Could not create socket factory 'com.mysql.management.driverlaunched.ServerLauncherSocketFactory' due to underlying exception:
  66. at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
  67. at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
  68. at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
  69. at java.base/java.lang.reflect.Constructor.newInstanceWithCaller(Constructor.java:500)
  70. at java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:481)
  71. at com.mysql.jdbc.Util.handleNewInstance(Util.java:425)
  72. at com.mysql.jdbc.Util.getInstance(Util.java:408)
  73. at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:919)
  74. at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:898)
  75. at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:887)
  76. at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:861)
  77. at com.mysql.jdbc.MysqlIO.createSocketFactory(MysqlIO.java:3330)
  78. at com.mysql.jdbc.MysqlIO.<init>(MysqlIO.java:296)
  79. at com.mysql.jdbc.ConnectionImpl.coreConnect(ConnectionImpl.java:2186)
  80. at com.mysql.jdbc.ConnectionImpl.connectWithRetries(ConnectionImpl.java:2035)
  81. ... 29 more
  82. Caused by: java.lang.ClassCastException: class com.mysql.management.driverlaunched.ServerLauncherSocketFactory cannot be cast to class com.mysql.jdbc.SocketFactory (com.mysql.management.driverlaunched.ServerLauncherSocketFactory is in unnamed module of loader 'app'; com.mysql.jdbc.SocketFactory is in unnamed module of loader org.apache.catalina.loader.WebappClassLoader @b9405e4)
  83. at com.mysql.jdbc.MysqlIO.createSocketFactory(MysqlIO.java:3328)
  84. ... 32 more
  85. Sep 24, 2020 12:38:34 PM org.apache.coyote.AbstractProtocol start
  86. INFO: Starting ProtocolHandler ["http-bio-8081"]
  87. ERROR - CommonsLogLogChute.log(96) |2020-09-24 12:38:39,787| #parse() null argument
  88. ERROR - CommonsLogLogChute.log(96) |2020-09-24 12:38:39,919| #parse() null argument
  89.  
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