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misnomer001

hajji_ia=hajjic+aigyrzhal, sintashta right pass

misnomer001
Aug 7th, 2022
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  1. qpAdm: parameter file: parqpadm
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. popleft: left
  5. popright: right
  6. details: YES
  7. allsnps: YES
  8. inbreed: NO
  9. oldallsnps: NO
  10. S1: newpush
  11. S1X: newpush
  12. indivname: newpush.ind
  13. snpname: newpush.snp
  14. genotypename: newpush.geno
  15. ## qpAdm version: 1520
  16. seed: 2030588208
  17. inbreed set NO
  18. inbreed set NO
  19. tmp: /tmp/fsx.8054
  20.  
  21. left pops:
  22. Iran_IA_HajjiFiruz
  23. Iran_HajjiFiruz_C
  24. Kyrgyzstan_Aygirdjal_BA
  25.  
  26. right pops:
  27. Mbuti.DG
  28. Serbia_IronGates_Mesolithic
  29. CHG
  30. EHG
  31. Sunghir
  32. China_YR_MN
  33. Turkey_Boncuklu_N
  34. Russia_Yana_UP.SG
  35. Russia_Shamanka_Eneolithic.SG
  36. ONG.SG
  37. WSHG
  38. Turkey_N
  39. Tarim_EMBA1
  40. Russia_MLBA_Sintashta
  41.  
  42. codimension 1
  43. f4info:
  44. f4rank: 1 dof: 12 chisq: 15.135 tail: 0.234132251 dofdiff: 14 chisqdiff: -15.135 taildiff: 1
  45. B:
  46. scale 1.000
  47. Serbia_IronGates_Mesolithic 0.160
  48. CHG -0.074
  49. EHG 1.202
  50. Sunghir 0.225
  51. China_YR_MN 0.582
  52. Turkey_Boncuklu_N -0.704
  53. Russia_Yana_UP.SG 0.521
  54. Russia_Shamanka_Eneolithic.SG 0.715
  55. ONG.SG 0.515
  56. WSHG 1.780
  57. Turkey_N -0.961
  58. Tarim_EMBA1 2.336
  59. Russia_MLBA_Sintashta 0.210
  60. A:
  61. scale 108.683
  62. Iran_HajjiFiruz_C -0.355
  63. Kyrgyzstan_Aygirdjal_BA 1.369
  64.  
  65.  
  66. full rank
  67. f4info:
  68. f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 12 chisqdiff: 15.135 taildiff: 0.234132251
  69. B:
  70. scale 248.120 80.921
  71. Serbia_IronGates_Mesolithic -0.463 0.094
  72. CHG -0.301 -0.144
  73. EHG -1.632 1.064
  74. Sunghir -0.544 0.158
  75. China_YR_MN -0.628 0.566
  76. Turkey_Boncuklu_N 0.084 -0.830
  77. Russia_Yana_UP.SG -1.009 0.417
  78. Russia_Shamanka_Eneolithic.SG -0.888 0.650
  79. ONG.SG -0.715 0.458
  80. WSHG -1.816 1.729
  81. Turkey_N 0.578 -1.013
  82. Tarim_EMBA1 -1.664 2.445
  83. Russia_MLBA_Sintashta -0.784 0.068
  84. A:
  85. scale 1.414 1.414
  86. Iran_HajjiFiruz_C 1.414 0.000
  87. Kyrgyzstan_Aygirdjal_BA 0.000 1.414
  88.  
  89.  
  90. best coefficients: 0.794 0.206
  91. totmean: 0.794 0.206
  92. boot mean: 0.794 0.206
  93. std. errors: 0.028 0.028
  94.  
  95. error covariance (* 1,000,000)
  96. 780 -780
  97. -780 780
  98.  
  99.  
  100. summ: Iran_IA_HajjiFiruz 2 0.234132 0.794 0.206 780 -780 780
  101.  
  102. fixed pat wt dof chisq tail prob
  103. 00 0 12 15.135 0.234132 0.794 0.206
  104. 01 1 13 62.641 1.76244e-08 1.000 0.000
  105. 10 1 13 535.392 0 0.000 1.000
  106. best pat: 00 0.234132 - -
  107. best pat: 01 1.76244e-08 chi(nested): 47.506 p-value for nested model: 5.48395e-12
  108.  
  109. coeffs: 0.794 0.206
  110.  
  111. ## dscore:: f_4(Base, Fit, Rbase, right2)
  112. ## genstat:: f_4(Base, Fit, right1, right2)
  113.  
  114. details: Iran_HajjiFiruz_C Serbia_IronGates_Mesolithic -0.001868 -1.251890
  115. details: Kyrgyzstan_Aygirdjal_BA Serbia_IronGates_Mesolithic 0.001157 0.739238
  116. dscore: Serbia_IronGates_Mesolithic f4: -0.001246 Z: -0.880560
  117.  
  118. details: Iran_HajjiFiruz_C CHG -0.001213 -0.683276
  119. details: Kyrgyzstan_Aygirdjal_BA CHG -0.001781 -0.980093
  120. dscore: CHG f4: -0.001330 Z: -0.788940
  121.  
  122. details: Iran_HajjiFiruz_C EHG -0.006578 -4.000676
  123. details: Kyrgyzstan_Aygirdjal_BA EHG 0.013149 7.091828
  124. dscore: EHG f4: -0.002520 Z: -1.595671
  125.  
  126. details: Iran_HajjiFiruz_C Sunghir -0.002191 -1.397948
  127. details: Kyrgyzstan_Aygirdjal_BA Sunghir 0.001948 1.169614
  128. dscore: Sunghir f4: -0.001340 Z: -0.901939
  129.  
  130. details: Iran_HajjiFiruz_C China_YR_MN -0.002532 -1.540624
  131. details: Kyrgyzstan_Aygirdjal_BA China_YR_MN 0.006998 4.037881
  132. dscore: China_YR_MN f4: -0.000572 Z: -0.364348
  133.  
  134. details: Iran_HajjiFiruz_C Turkey_Boncuklu_N 0.000338 0.204586
  135. details: Kyrgyzstan_Aygirdjal_BA Turkey_Boncuklu_N -0.010251 -6.026841
  136. dscore: Turkey_Boncuklu_N f4: -0.001840 Z: -1.168572
  137.  
  138. details: Iran_HajjiFiruz_C Russia_Yana_UP.SG -0.004068 -2.509628
  139. details: Kyrgyzstan_Aygirdjal_BA Russia_Yana_UP.SG 0.005149 3.000002
  140. dscore: Russia_Yana_UP.SG f4: -0.002172 Z: -1.411736
  141.  
  142. details: Iran_HajjiFiruz_C Russia_Shamanka_Eneolithic.SG -0.003579 -2.454830
  143. details: Kyrgyzstan_Aygirdjal_BA Russia_Shamanka_Eneolithic.SG 0.008037 5.021250
  144. dscore: Russia_Shamanka_Eneolithic.SG f4: -0.001189 Z: -0.854571
  145.  
  146. details: Iran_HajjiFiruz_C ONG.SG -0.002883 -1.865716
  147. details: Kyrgyzstan_Aygirdjal_BA ONG.SG 0.005661 3.550382
  148. dscore: ONG.SG f4: -0.001126 Z: -0.771913
  149.  
  150. details: Iran_HajjiFiruz_C WSHG -0.007320 -3.988752
  151. details: Kyrgyzstan_Aygirdjal_BA WSHG 0.021366 10.671558
  152. dscore: WSHG f4: -0.001419 Z: -0.807307
  153.  
  154. details: Iran_HajjiFiruz_C Turkey_N 0.002328 1.673353
  155. details: Kyrgyzstan_Aygirdjal_BA Turkey_N -0.012517 -8.458490
  156. dscore: Turkey_N f4: -0.000726 Z: -0.544407
  157.  
  158. details: Iran_HajjiFiruz_C Tarim_EMBA1 -0.006704 -3.835385
  159. details: Kyrgyzstan_Aygirdjal_BA Tarim_EMBA1 0.030216 15.282814
  160. dscore: Tarim_EMBA1 f4: 0.000891 Z: 0.531437
  161.  
  162. details: Iran_HajjiFiruz_C Russia_MLBA_Sintashta -0.003160 -2.365605
  163. details: Kyrgyzstan_Aygirdjal_BA Russia_MLBA_Sintashta 0.000836 0.587381
  164. dscore: Russia_MLBA_Sintashta f4: -0.002338 Z: -1.834293
  165.  
  166. gendstat: Mbuti.DG Serbia_IronGates_Mesolithic -0.881
  167. gendstat: Mbuti.DG CHG -0.789
  168. gendstat: Mbuti.DG EHG -1.596
  169. gendstat: Mbuti.DG Sunghir -0.902
  170. gendstat: Mbuti.DG China_YR_MN -0.364
  171. gendstat: Mbuti.DG Turkey_Boncuklu_N -1.169
  172. gendstat: Mbuti.DG Russia_Yana_UP.SG -1.412
  173. gendstat: Mbuti.DG Russia_Shamanka_Eneolithic.SG -0.855
  174. gendstat: Mbuti.DG ONG.SG -0.772
  175. gendstat: Mbuti.DG WSHG -0.807
  176. gendstat: Mbuti.DG Turkey_N -0.544
  177. gendstat: Mbuti.DG Tarim_EMBA1 0.531
  178. gendstat: Mbuti.DG Russia_MLBA_Sintashta -1.834
  179. gendstat: Serbia_IronGates_Mesolithic CHG -0.050
  180. gendstat: Serbia_IronGates_Mesolithic EHG -1.066
  181. gendstat: Serbia_IronGates_Mesolithic Sunghir -0.073
  182. gendstat: Serbia_IronGates_Mesolithic China_YR_MN 0.463
  183. gendstat: Serbia_IronGates_Mesolithic Turkey_Boncuklu_N -0.466
  184. gendstat: Serbia_IronGates_Mesolithic Russia_Yana_UP.SG -0.655
  185. gendstat: Serbia_IronGates_Mesolithic Russia_Shamanka_Eneolithic.SG 0.042
  186. gendstat: Serbia_IronGates_Mesolithic ONG.SG 0.090
  187. gendstat: Serbia_IronGates_Mesolithic WSHG -0.117
  188. gendstat: Serbia_IronGates_Mesolithic Turkey_N 0.495
  189. gendstat: Serbia_IronGates_Mesolithic Tarim_EMBA1 1.447
  190. gendstat: Serbia_IronGates_Mesolithic Russia_MLBA_Sintashta -1.293
  191. gendstat: CHG EHG -0.694
  192. gendstat: CHG Sunghir -0.006
  193. gendstat: CHG China_YR_MN 0.412
  194. gendstat: CHG Turkey_Boncuklu_N -0.290
  195. gendstat: CHG Russia_Yana_UP.SG -0.459
  196. gendstat: CHG Russia_Shamanka_Eneolithic.SG 0.082
  197. gendstat: CHG ONG.SG 0.118
  198. gendstat: CHG WSHG -0.046
  199. gendstat: CHG Turkey_N 0.381
  200. gendstat: CHG Tarim_EMBA1 1.219
  201. gendstat: CHG Russia_MLBA_Sintashta -0.707
  202. gendstat: EHG Sunghir 0.772
  203. gendstat: EHG China_YR_MN 1.259
  204. gendstat: EHG Turkey_Boncuklu_N 0.432
  205. gendstat: EHG Russia_Yana_UP.SG 0.222
  206. gendstat: EHG Russia_Shamanka_Eneolithic.SG 0.960
  207. gendstat: EHG ONG.SG 0.913
  208. gendstat: EHG WSHG 0.766
  209. gendstat: EHG Turkey_N 1.343
  210. gendstat: EHG Tarim_EMBA1 2.480
  211. gendstat: EHG Russia_MLBA_Sintashta 0.161
  212. gendstat: Sunghir China_YR_MN 0.483
  213. gendstat: Sunghir Turkey_Boncuklu_N -0.336
  214. gendstat: Sunghir Russia_Yana_UP.SG -0.557
  215. gendstat: Sunghir Russia_Shamanka_Eneolithic.SG 0.102
  216. gendstat: Sunghir ONG.SG 0.148
  217. gendstat: Sunghir WSHG -0.047
  218. gendstat: Sunghir Turkey_N 0.475
  219. gendstat: Sunghir Tarim_EMBA1 1.376
  220. gendstat: Sunghir Russia_MLBA_Sintashta -0.839
  221. gendstat: China_YR_MN Turkey_Boncuklu_N -0.744
  222. gendstat: China_YR_MN Russia_Yana_UP.SG -1.012
  223. gendstat: China_YR_MN Russia_Shamanka_Eneolithic.SG -0.574
  224. gendstat: China_YR_MN ONG.SG -0.400
  225. gendstat: China_YR_MN WSHG -0.492
  226. gendstat: China_YR_MN Turkey_N -0.105
  227. gendstat: China_YR_MN Tarim_EMBA1 0.910
  228. gendstat: China_YR_MN Russia_MLBA_Sintashta -1.298
  229. gendstat: Turkey_Boncuklu_N Russia_Yana_UP.SG -0.206
  230. gendstat: Turkey_Boncuklu_N Russia_Shamanka_Eneolithic.SG 0.420
  231. gendstat: Turkey_Boncuklu_N ONG.SG 0.462
  232. gendstat: Turkey_Boncuklu_N WSHG 0.234
  233. gendstat: Turkey_Boncuklu_N Turkey_N 1.088
  234. gendstat: Turkey_Boncuklu_N Tarim_EMBA1 1.543
  235. gendstat: Turkey_Boncuklu_N Russia_MLBA_Sintashta -0.435
  236. gendstat: Russia_Yana_UP.SG Russia_Shamanka_Eneolithic.SG 0.706
  237. gendstat: Russia_Yana_UP.SG ONG.SG 0.694
  238. gendstat: Russia_Yana_UP.SG WSHG 0.433
  239. gendstat: Russia_Yana_UP.SG Turkey_N 1.008
  240. gendstat: Russia_Yana_UP.SG Tarim_EMBA1 1.876
  241. gendstat: Russia_Yana_UP.SG Russia_MLBA_Sintashta -0.130
  242. gendstat: Russia_Shamanka_Eneolithic.SG ONG.SG 0.052
  243. gendstat: Russia_Shamanka_Eneolithic.SG WSHG -0.146
  244. gendstat: Russia_Shamanka_Eneolithic.SG Turkey_N 0.353
  245. gendstat: Russia_Shamanka_Eneolithic.SG Tarim_EMBA1 1.487
  246. gendstat: Russia_Shamanka_Eneolithic.SG Russia_MLBA_Sintashta -0.963
  247. gendstat: ONG.SG WSHG -0.171
  248. gendstat: ONG.SG Turkey_N 0.293
  249. gendstat: ONG.SG Tarim_EMBA1 1.323
  250. gendstat: ONG.SG Russia_MLBA_Sintashta -0.972
  251. gendstat: WSHG Turkey_N 0.421
  252. gendstat: WSHG Tarim_EMBA1 1.579
  253. gendstat: WSHG Russia_MLBA_Sintashta -0.665
  254. gendstat: Turkey_N Tarim_EMBA1 1.008
  255. gendstat: Turkey_N Russia_MLBA_Sintashta -1.941
  256. gendstat: Tarim_EMBA1 Russia_MLBA_Sintashta -2.369
  257.  
  258. removing /tmp/fsx.8054
  259. ##end of qpAdm: 2.355 seconds cpu 0.782 Mbytes in use
  260.  
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