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yt INST_CONDA=1 with rockstar fail

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Jun 19th, 2017
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  1. EXECUTING:
  2. /home/hd/hd_hd/user/yt-conda/bin/git clone https://github.com/yt-project/yt_conda /home/hd/hd_hd/user/yt-conda/src/yt_conda
  3. Cloning into '/home/hd/hd_hd/user/yt-conda/src/yt_conda'...
  4. Cloning into '/home/hd/hd_hd/user/yt-conda/src/rockstar'...
  5. EXECUTING:
  6. /home/hd/hd_hd/user/yt-conda/bin/conda build /home/hd/hd_hd/user/yt-conda/src/yt_conda/rockstar
  7. requesting all changes
  8. adding changesets
  9. adding manifests
  10. adding file changes
  11. added 23 changesets with 385 changes to 142 files
  12. updating to branch default
  13. 142 files updated, 0 files merged, 0 files removed, 0 files unresolved
  14. updating to branch default
  15. 142 files updated, 0 files merged, 0 files removed, 0 files unresolved
  16. 27 files updated, 0 files merged, 0 files removed, 0 files unresolved
  17. + source /home/hd/hd_hd/user/yt-conda/bin/activate /home/hd/hd_hd/user/yt-conda/conda-bld/rockstar_1497876163807/_b_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl
  18. + make lib
  19. gcc -m64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_BSD_SOURCE -D_POSIX_SOURCE -D_POSIX_C_SOURCE=200809L -D_SVID_SOURCE -D_DARWIN_C_SOURCE -Wall -fno-math-errno -fPIC -shared rockstar.c check_syscalls.c fof.c groupies.c subhalo_metric.c potential.c nfw.c jacobi.c fun_times.c interleaving.c universe_time.c hubble.c integrate.c distance.c config_vars.c config.c bounds.c inthash.c io/read_config.c client.c server.c merger.c inet/socket.c inet/rsocket.c inet/address.c io/meta_io.c io/io_internal.c io/io_ascii.c io/stringparse.c io/io_gadget.c io/io_generic.c io/io_art.c io/io_tipsy.c io/io_bgc2.c io/io_util.c io/io_arepo.c io/io_hdf5.c -o librockstar.so -lm -O3 -std=c99
  20. /opt/bwhpc/common/compiler/gnu/5.2.0/libexec/gcc/x86_64-unknown-linux-gnu/5.2.0/cc1: error while loading shared libraries: libisl.so.10: cannot open shared object file: No such file or directory
  21. make: *** [lib] Error 1
  22. BUILD START: rockstar-1.0.0-0
  23. checkout: 'tip'
  24. Package: rockstar-1.0.0-0
  25. source tree in: /home/hd/hd_hd/user/yt-conda/conda-bld/rockstar_1497876163807/work
  26. Traceback (most recent call last):
  27. File "/home/hd/hd_hd/user/yt-conda/bin/conda-build", line 6, in <module>
  28. sys.exit(conda_build.cli.main_build.main())
  29. File "/home/hd/hd_hd/user/yt-conda/lib/python3.6/site-packages/conda_build/cli/main_build.py", line 334, in main
  30. execute(sys.argv[1:])
  31. File "/home/hd/hd_hd/user/yt-conda/lib/python3.6/site-packages/conda_build/cli/main_build.py", line 325, in execute
  32. noverify=args.no_verify)
  33. File "/home/hd/hd_hd/user/yt-conda/lib/python3.6/site-packages/conda_build/api.py", line 97, in build
  34. need_source_download=need_source_download, config=config)
  35. File "/home/hd/hd_hd/user/yt-conda/lib/python3.6/site-packages/conda_build/build.py", line 1518, in build_tree
  36. config=config)
  37. File "/home/hd/hd_hd/user/yt-conda/lib/python3.6/site-packages/conda_build/build.py", line 1143, in build
  38. utils.check_call_env(cmd, env=env, cwd=src_dir)
  39. File "/home/hd/hd_hd/user/yt-conda/lib/python3.6/site-packages/conda_build/utils.py", line 628, in check_call_env
  40. return _func_defaulting_env_to_os_environ(subprocess.check_call, *popenargs, **kwargs)
  41. File "/home/hd/hd_hd/user/yt-conda/lib/python3.6/site-packages/conda_build/utils.py", line 624, in _func_defaulting_env_to_os_environ
  42. return func(_args, **kwargs)
  43. File "/home/hd/hd_hd/user/yt-conda/lib/python3.6/subprocess.py", line 291, in check_call
  44. raise CalledProcessError(retcode, cmd)
  45. subprocess.CalledProcessError: Command '['/bin/bash', '-x', '-e', '/home/hd/hd_hd/user/yt-conda/conda-bld/rockstar_1497876163807/work/conda_build.sh']' returned non-zero exit status 2.
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