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misnomer001

Sarazm = iranN+chg+turkeyN+tarim pass

misnomer001
Aug 19th, 2022
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  1. qpAdm: parameter file: parqpadm
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. fstatsname: fstatsa5.txt
  5. popleft: left
  6. popright: right
  7. details: YES
  8. allsnps: YES
  9. inbreed: NO
  10. oldallsnps: NO
  11. ## qpAdm version: 1520
  12. seed: 1901211018
  13. inbreed set NO
  14. inbreed set NO
  15.  
  16. left pops:
  17. Tajikistan_C_Sarazm
  18. Iran_GanjDareh_N
  19. Turkey_N
  20. CHG_Kotias
  21. Tarim_EMBA1
  22.  
  23. right pops:
  24. Mbuti.DG
  25. ONG.SG
  26. CHG_Satsurblia
  27. EHG
  28. Serbia_IronGates_Mesolithic
  29. Russia_Khvalynsk_Eneolithic
  30. WSHG
  31. Russia_Shamanka_Eneolithic.SG
  32. PPN
  33.  
  34. codimension 1
  35. f4info:
  36. f4rank: 3 dof: 5 chisq: 7.478 tail: 0.187469254 dofdiff: 7 chisqdiff: -7.478 taildiff: 1
  37. B:
  38. scale 1.000 1.000 1.000
  39. ONG.SG 0.514 -0.099 -0.205
  40. CHG_Satsurblia -0.323 -1.634 1.657
  41. EHG 1.385 0.220 0.026
  42. Serbia_IronGates_Mesolithic 0.356 1.093 1.202
  43. Russia_Khvalynsk_Eneolithic 1.068 0.021 -0.029
  44. WSHG 1.866 -0.322 -0.884
  45. Russia_Shamanka_Eneolithic.SG 0.924 -0.162 -0.267
  46. PPN -0.330 1.987 1.706
  47. A:
  48. scale 196.851 488.432 552.858
  49. Iran_GanjDareh_N -0.633 -0.010 -0.649
  50. Turkey_N -0.327 1.508 0.702
  51. CHG_Kotias -0.173 -1.304 1.756
  52. Tarim_EMBA1 1.861 0.163 0.035
  53.  
  54.  
  55. full rank
  56. f4info:
  57. f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 5 chisqdiff: 7.478 taildiff: 0.187469254
  58. B:
  59. scale 316.125 233.919 258.044 106.769
  60. ONG.SG -0.515 -0.341 -0.228 0.503
  61. CHG_Satsurblia -0.293 -0.548 2.567 -0.375
  62. EHG -1.410 -0.345 -0.401 1.414
  63. Serbia_IronGates_Mesolithic -0.862 0.998 0.144 0.396
  64. Russia_Khvalynsk_Eneolithic -1.187 -0.458 -0.335 1.052
  65. WSHG -1.687 -1.277 -1.001 1.833
  66. Russia_Shamanka_Eneolithic.SG -0.756 -0.479 -0.203 0.964
  67. PPN -0.304 2.098 0.155 -0.240
  68. A:
  69. scale 2.000 2.000 2.000 2.000
  70. Iran_GanjDareh_N 2.000 0.000 0.000 0.000
  71. Turkey_N 0.000 2.000 0.000 0.000
  72. CHG_Kotias 0.000 0.000 2.000 0.000
  73. Tarim_EMBA1 0.000 0.000 0.000 2.000
  74.  
  75.  
  76. best coefficients: 0.530 0.109 0.148 0.213
  77. totmean: 0.530 0.109 0.148 0.213
  78. boot mean: 0.531 0.108 0.148 0.213
  79. std. errors: 0.058 0.025 0.042 0.015
  80.  
  81. error covariance (* 1,000,000)
  82. 3342 -898 -1968 -475
  83. -898 639 123 137
  84. -1968 123 1728 118
  85. -475 137 118 221
  86.  
  87.  
  88. summ: Tajikistan_C_Sarazm 4 0.187469 0.531 0.108 0.148 0.213 3342 -898 -1968 -475 639 ...
  89. 123 137 1728 118 221
  90.  
  91. fixed pat wt dof chisq tail prob
  92. 0000 0 5 7.478 0.187469 0.530 0.109 0.148 0.213
  93. 0001 1 6 294.636 0 3.379 -0.181 -2.197 0.000 infeasible
  94. 0010 1 6 20.579 0.00218268 0.701 0.098 0.000 0.201
  95. 0100 1 6 24.909 0.000354905 0.666 0.000 0.140 0.194
  96. 1000 1 6 86.235 1.83075e-16 0.000 0.229 0.490 0.281
  97. 0011 2 7 163.508 0 1.063 -0.063 0.000 0.000 infeasible
  98. 0101 2 7 162.585 0 1.172 0.000 -0.172 0.000 infeasible
  99. 0110 2 7 33.202 2.42784e-05 0.817 0.000 0.000 0.183
  100. 1001 2 7 327.768 0 0.000 -0.018 1.018 0.000 infeasible
  101. 1010 2 7 505.232 0 0.000 0.603 0.000 0.397
  102. 1100 2 7 152.098 1.47143e-29 0.000 0.000 0.747 0.253
  103. 0111 3 8 166.598 0 1.000 0.000 0.000 0.000
  104. 1011 3 8 1408.354 0 0.000 1.000 0.000 0.000
  105. 1101 3 8 327.825 0 0.000 0.000 1.000 0.000
  106. 1110 3 8 2353.778 0 0.000 0.000 0.000 1.000
  107. best pat: 0000 0.187469 - -
  108. best pat: 0010 0.00218268 chi(nested): 13.102 p-value for nested model: 0.000295041
  109. best pat: 1100 1.47143e-29 not nested
  110. best pat: 0111 6.657e-32 not nested
  111.  
  112. coeffs: 0.530 0.109 0.148 0.213
  113.  
  114. ## dscore:: f_4(Base, Fit, Rbase, right2)
  115. ## genstat:: f_4(Base, Fit, right1, right2)
  116.  
  117. details: Iran_GanjDareh_N ONG.SG -0.001629 -4.187219
  118. details: Turkey_N ONG.SG -0.001459 -3.977802
  119. details: CHG_Kotias ONG.SG -0.000883 -1.842168
  120. details: Tarim_EMBA1 ONG.SG 0.004708 10.881208
  121. dscore: ONG.SG f4: -0.000150 Z: -0.433455
  122.  
  123. details: Iran_GanjDareh_N CHG_Satsurblia -0.000927 -1.794488
  124. details: Turkey_N CHG_Satsurblia -0.002341 -4.781652
  125. details: CHG_Kotias CHG_Satsurblia 0.009947 13.564333
  126. details: Tarim_EMBA1 CHG_Satsurblia -0.003514 -6.178974
  127. dscore: CHG_Satsurblia f4: -0.000019 Z: -0.041487
  128.  
  129. details: Iran_GanjDareh_N EHG -0.004460 -10.471297
  130. details: Turkey_N EHG -0.001473 -3.588823
  131. details: CHG_Kotias EHG -0.001554 -2.762854
  132. details: Tarim_EMBA1 EHG 0.013242 27.167673
  133. dscore: EHG f4: 0.000066 Z: 0.177014
  134.  
  135. details: Iran_GanjDareh_N Serbia_IronGates_Mesolithic -0.002728 -7.767171
  136. details: Turkey_N Serbia_IronGates_Mesolithic 0.004265 12.676267
  137. details: CHG_Kotias Serbia_IronGates_Mesolithic 0.000559 1.202887
  138. details: Tarim_EMBA1 Serbia_IronGates_Mesolithic 0.003709 9.644544
  139. dscore: Serbia_IronGates_Mesolithic f4: -0.000110 Z: -0.356704
  140.  
  141. details: Iran_GanjDareh_N Russia_Khvalynsk_Eneolithic -0.003754 -8.441482
  142. details: Turkey_N Russia_Khvalynsk_Eneolithic -0.001957 -4.509532
  143. details: CHG_Kotias Russia_Khvalynsk_Eneolithic -0.001300 -2.320446
  144. details: Tarim_EMBA1 Russia_Khvalynsk_Eneolithic 0.009852 18.570659
  145. dscore: Russia_Khvalynsk_Eneolithic f4: -0.000297 Z: -0.746088
  146.  
  147. details: Iran_GanjDareh_N WSHG -0.005336 -11.740527
  148. details: Turkey_N WSHG -0.005459 -13.121728
  149. details: CHG_Kotias WSHG -0.003877 -6.862797
  150. details: Tarim_EMBA1 WSHG 0.017163 33.538529
  151. dscore: WSHG f4: -0.000340 Z: -0.844021
  152.  
  153. details: Iran_GanjDareh_N Russia_Shamanka_Eneolithic.SG -0.002392 -6.656109
  154. details: Turkey_N Russia_Shamanka_Eneolithic.SG -0.002046 -5.932842
  155. details: CHG_Kotias Russia_Shamanka_Eneolithic.SG -0.000787 -1.705634
  156. details: Tarim_EMBA1 Russia_Shamanka_Eneolithic.SG 0.009024 21.672681
  157. dscore: Russia_Shamanka_Eneolithic.SG f4: 0.000315 Z: 0.978116
  158.  
  159. details: Iran_GanjDareh_N PPN -0.000961 -2.545556
  160. details: Turkey_N PPN 0.008967 23.761214
  161. details: CHG_Kotias PPN 0.000599 1.182331
  162. details: Tarim_EMBA1 PPN -0.002252 -5.136358
  163. dscore: PPN f4: 0.000074 Z: 0.219992
  164.  
  165. gendstat: Mbuti.DG ONG.SG -0.433
  166. gendstat: Mbuti.DG CHG_Satsurblia -0.041
  167. gendstat: Mbuti.DG EHG 0.177
  168. gendstat: Mbuti.DG Serbia_IronGates_Mesolithic -0.357
  169. gendstat: Mbuti.DG Russia_Khvalynsk_Eneolithic -0.746
  170. gendstat: Mbuti.DG WSHG -0.844
  171. gendstat: Mbuti.DG Russia_Shamanka_Eneolithic.SG 0.978
  172. gendstat: Mbuti.DG PPN 0.220
  173. gendstat: ONG.SG CHG_Satsurblia 0.282
  174. gendstat: ONG.SG EHG 0.575
  175. gendstat: ONG.SG Serbia_IronGates_Mesolithic 0.122
  176. gendstat: ONG.SG Russia_Khvalynsk_Eneolithic -0.373
  177. gendstat: ONG.SG WSHG -0.487
  178. gendstat: ONG.SG Russia_Shamanka_Eneolithic.SG 1.755
  179. gendstat: ONG.SG PPN 0.552
  180. gendstat: CHG_Satsurblia EHG 0.180
  181. gendstat: CHG_Satsurblia Serbia_IronGates_Mesolithic -0.211
  182. gendstat: CHG_Satsurblia Russia_Khvalynsk_Eneolithic -0.573
  183. gendstat: CHG_Satsurblia WSHG -0.655
  184. gendstat: CHG_Satsurblia Russia_Shamanka_Eneolithic.SG 0.764
  185. gendstat: CHG_Satsurblia PPN 0.197
  186. gendstat: EHG Serbia_IronGates_Mesolithic -0.635
  187. gendstat: EHG Russia_Khvalynsk_Eneolithic -1.066
  188. gendstat: EHG WSHG -1.282
  189. gendstat: EHG Russia_Shamanka_Eneolithic.SG 0.734
  190. gendstat: EHG PPN 0.019
  191. gendstat: Serbia_IronGates_Mesolithic Russia_Khvalynsk_Eneolithic -0.606
  192. gendstat: Serbia_IronGates_Mesolithic WSHG -0.708
  193. gendstat: Serbia_IronGates_Mesolithic Russia_Shamanka_Eneolithic.SG 1.493
  194. gendstat: Serbia_IronGates_Mesolithic PPN 0.559
  195. gendstat: Russia_Khvalynsk_Eneolithic WSHG -0.123
  196. gendstat: Russia_Khvalynsk_Eneolithic Russia_Shamanka_Eneolithic.SG 1.746
  197. gendstat: Russia_Khvalynsk_Eneolithic PPN 0.884
  198. gendstat: WSHG Russia_Shamanka_Eneolithic.SG 1.892
  199. gendstat: WSHG PPN 0.958
  200. gendstat: Russia_Shamanka_Eneolithic.SG PPN -0.655
  201.  
  202. ##end of qpAdm: 11.987 seconds cpu 0.971 Mbytes in use
  203.  
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