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Legend_9813

Jat_Kumsay w/Aygirdjal in right

Legend_9813
Feb 15th, 2023
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  1. qpAdm: parameter file: parqpadm
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. indivname: blog_new.ind
  5. snpname: blog_new.snp
  6. genotypename: blog_new.geno
  7. popleft: left
  8. popright: right
  9. inbreed: NO
  10. allsnps: YES
  11. ## qpAdm version: 1520
  12. seed: 11227957
  13. inbreed set NO
  14. inbreed set NO
  15. tmp: /tmp/fsx.342
  16.  
  17. left pops:
  18. Jat_Haryana
  19. Irula.DG
  20. Indus_Periphery_West
  21. Kazakhstan_Kumsay_EBA
  22. Russia_MLBA_Sintashta
  23.  
  24. right pops:
  25. Mbuti.DG
  26. EHG
  27. CHG
  28. Levant_PPN
  29. Turkey_N
  30. Serbia_IronGates_Mesolithic
  31. Russia_Tyumen_HG
  32. Mongolia_North_N
  33. Onge.DG
  34. Iran_GanjDareh_N
  35. Kyrgyzstan_Aigyrzhal_BA
  36.  
  37. codimension 1
  38. f4info:
  39. f4rank: 3 dof: 7 chisq: 14.447 tail: 0.0437813172 dofdiff: 9 chisqdiff: -14.447 taildiff: 1
  40. B:
  41. scale 1.000 1.000 1.000
  42. EHG 1.678 -0.335 -0.676
  43. CHG 0.709 0.559 0.770
  44. Levant_PPN 0.644 1.382 -0.123
  45. Turkey_N 0.746 1.605 -0.665
  46. Serbia_IronGates_Mesolithic 1.275 1.273 -1.645
  47. Russia_Tyumen_HG 1.680 -1.423 0.095
  48. Mongolia_North_N 0.038 -0.902 -0.326
  49. Onge.DG -0.424 -0.603 -0.278
  50. Iran_GanjDareh_N 0.377 0.284 2.067
  51. Kyrgyzstan_Aigyrzhal_BA 0.968 -0.435 1.150
  52. A:
  53. scale 84.558 177.334 307.608
  54. Irula.DG -1.117 -0.930 -0.961
  55. Indus_Periphery_West -0.100 0.084 1.563
  56. Kazakhstan_Kumsay_EBA 1.435 -1.575 -0.254
  57. Russia_MLBA_Sintashta 0.826 0.804 -0.754
  58.  
  59.  
  60. full rank
  61. f4info:
  62. f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 7 chisqdiff: 14.447 taildiff: 0.0437813172
  63. B:
  64. scale 64.909 169.501 55.367 87.087
  65. EHG -1.308 -1.333 1.693 1.314
  66. CHG -1.192 -0.207 0.169 0.369
  67. Levant_PPN -1.011 -0.219 -0.063 1.130
  68. Turkey_N -1.094 -0.758 -0.077 1.380
  69. Serbia_IronGates_Mesolithic -1.309 -1.946 0.583 1.819
  70. Russia_Tyumen_HG -0.958 -0.355 2.332 0.905
  71. Mongolia_North_N 0.189 -0.846 0.377 -0.429
  72. Onge.DG 0.494 -0.645 -0.168 -0.686
  73. Iran_GanjDareh_N -0.929 1.417 0.061 -0.106
  74. Kyrgyzstan_Aigyrzhal_BA -0.934 0.709 1.070 0.402
  75. A:
  76. scale 2.000 2.000 2.000 2.000
  77. Irula.DG 2.000 0.000 0.000 0.000
  78. Indus_Periphery_West 0.000 2.000 0.000 0.000
  79. Kazakhstan_Kumsay_EBA 0.000 0.000 2.000 0.000
  80. Russia_MLBA_Sintashta 0.000 0.000 0.000 2.000
  81.  
  82.  
  83. best coefficients: 0.273 0.342 0.035 0.349
  84. totmean: 0.273 0.342 0.035 0.349
  85. boot mean: 0.273 0.343 0.035 0.349
  86. std. errors: 0.038 0.047 0.030 0.030
  87.  
  88. error covariance (* 1,000,000)
  89. 1425 -1380 -20 -25
  90. -1380 2195 -412 -403
  91. -20 -412 924 -492
  92. -25 -403 -492 920
  93.  
  94.  
  95. summ: Jat_Haryana 4 0.043781 0.273 0.343 0.035 0.349 1425 -1380 -20 -25 2195 ...
  96. -412 -403 924 -492 920
  97.  
  98. fixed pat wt dof chisq tail prob
  99. 0000 0 7 14.447 0.0437813 0.273 0.342 0.035 0.349
  100. 0001 1 8 127.333 1.00985e-23 0.191 0.626 0.182 0.000
  101. 0010 1 8 16.008 0.0422617 0.281 0.352 0.000 0.367
  102. 0100 1 8 75.590 3.75811e-13 0.487 0.000 0.098 0.415
  103. 1000 1 8 59.815 5.06743e-10 0.000 0.628 0.036 0.336
  104. 0011 2 9 152.224 3.0514e-28 0.118 0.882 0.000 0.000
  105. 0101 2 9 251.150 0 0.579 0.000 0.421 0.000
  106. 0110 2 9 85.103 1.55582e-14 0.520 0.000 0.000 0.480
  107. 1001 2 9 141.936 4.10819e-26 0.000 0.849 0.151 0.000
  108. 1010 2 9 61.802 6.0168e-10 0.000 0.646 0.000 0.354
  109. 1100 2 9 452.991 0 0.000 0.000 0.497 0.503
  110. 0111 3 10 501.878 0 1.000 0.000 0.000 0.000
  111. 1011 3 10 156.394 1.79676e-28 0.000 1.000 0.000 0.000
  112. 1101 3 10 575.874 0 0.000 0.000 1.000 0.000
  113. 1110 3 10 680.807 0 0.000 0.000 0.000 1.000
  114. best pat: 0000 0.0437813 - -
  115. best pat: 0010 0.0422617 chi(nested): 1.561 p-value for nested model: 0.211453
  116. best pat: 1010 6.0168e-10 chi(nested): 45.794 p-value for nested model: 1.31352e-11
  117. best pat: 1011 1.79676e-28 chi(nested): 94.592 p-value for nested model: 2.34002e-22
  118.  
  119. coeffs: 0.273 0.342 0.035 0.349
  120.  
  121. ## dscore:: f_4(Base, Fit, Rbase, right2)
  122. ## genstat:: f_4(Base, Fit, right1, right2)
  123.  
  124. details: Irula.DG EHG -0.020155 -12.106245
  125. details: Indus_Periphery_West EHG -0.007866 -3.723792
  126. details: Kazakhstan_Kumsay_EBA EHG 0.030574 14.038893
  127. details: Russia_MLBA_Sintashta EHG 0.015092 9.939310
  128. dscore: EHG f4: -0.001842 Z: -1.169044
  129.  
  130. details: Irula.DG CHG -0.018368 -11.585004
  131. details: Indus_Periphery_West CHG -0.001222 -0.598041
  132. details: Kazakhstan_Kumsay_EBA CHG 0.003054 1.497507
  133. details: Russia_MLBA_Sintashta CHG 0.004234 2.993139
  134. dscore: CHG f4: -0.003846 Z: -2.621972
  135.  
  136. details: Irula.DG Levant_PPN -0.015574 -10.073327
  137. details: Indus_Periphery_West Levant_PPN -0.001289 -0.677777
  138. details: Kazakhstan_Kumsay_EBA Levant_PPN -0.001141 -0.617525
  139. details: Russia_MLBA_Sintashta Levant_PPN 0.012974 9.354451
  140. dscore: Levant_PPN f4: -0.000202 Z: -0.142291
  141.  
  142. details: Irula.DG Turkey_N -0.016860 -13.572905
  143. details: Indus_Periphery_West Turkey_N -0.004472 -2.807094
  144. details: Kazakhstan_Kumsay_EBA Turkey_N -0.001385 -0.908969
  145. details: Russia_MLBA_Sintashta Turkey_N 0.015842 14.017043
  146. dscore: Turkey_N f4: -0.000649 Z: -0.557177
  147.  
  148. details: Irula.DG Serbia_IronGates_Mesolithic -0.020170 -14.264265
  149. details: Indus_Periphery_West Serbia_IronGates_Mesolithic -0.011482 -6.358871
  150. details: Kazakhstan_Kumsay_EBA Serbia_IronGates_Mesolithic 0.010531 5.925301
  151. details: Russia_MLBA_Sintashta Serbia_IronGates_Mesolithic 0.020891 16.569182
  152. dscore: Serbia_IronGates_Mesolithic f4: -0.001766 Z: -1.340867
  153.  
  154. details: Irula.DG Russia_Tyumen_HG -0.014760 -7.420310
  155. details: Indus_Periphery_West Russia_Tyumen_HG -0.002095 -0.863740
  156. details: Kazakhstan_Kumsay_EBA Russia_Tyumen_HG 0.042114 15.905257
  157. details: Russia_MLBA_Sintashta Russia_Tyumen_HG 0.010396 5.755642
  158. dscore: Russia_Tyumen_HG f4: 0.000373 Z: 0.203043
  159.  
  160. details: Irula.DG Mongolia_North_N 0.002918 1.980360
  161. details: Indus_Periphery_West Mongolia_North_N -0.004989 -2.732162
  162. details: Kazakhstan_Kumsay_EBA Mongolia_North_N 0.006810 3.835159
  163. details: Russia_MLBA_Sintashta Mongolia_North_N -0.004924 -3.801590
  164. dscore: Mongolia_North_N f4: -0.002390 Z: -1.798640
  165.  
  166. details: Irula.DG Onge.DG 0.007612 4.719870
  167. details: Indus_Periphery_West Onge.DG -0.003807 -2.017416
  168. details: Kazakhstan_Kumsay_EBA Onge.DG -0.003034 -1.627494
  169. details: Russia_MLBA_Sintashta Onge.DG -0.007875 -5.656005
  170. dscore: Onge.DG f4: -0.002083 Z: -1.457498
  171.  
  172. details: Irula.DG Iran_GanjDareh_N -0.014317 -10.518069
  173. details: Indus_Periphery_West Iran_GanjDareh_N 0.008362 4.976623
  174. details: Kazakhstan_Kumsay_EBA Iran_GanjDareh_N 0.001093 0.679344
  175. details: Russia_MLBA_Sintashta Iran_GanjDareh_N -0.001215 -1.014636
  176. dscore: Iran_GanjDareh_N f4: -0.001434 Z: -1.151683
  177.  
  178. details: Irula.DG Kyrgyzstan_Aigyrzhal_BA -0.014387 -8.645382
  179. details: Indus_Periphery_West Kyrgyzstan_Aigyrzhal_BA 0.004184 2.072372
  180. details: Kazakhstan_Kumsay_EBA Kyrgyzstan_Aigyrzhal_BA 0.019328 9.698743
  181. details: Russia_MLBA_Sintashta Kyrgyzstan_Aigyrzhal_BA 0.004616 3.129093
  182. dscore: Kyrgyzstan_Aigyrzhal_BA f4: -0.000201 Z: -0.132068
  183.  
  184. gendstat: Mbuti.DG EHG -1.169
  185. gendstat: Mbuti.DG CHG -2.622
  186. gendstat: Mbuti.DG Levant_PPN -0.142
  187. gendstat: Mbuti.DG Turkey_N -0.557
  188. gendstat: Mbuti.DG Serbia_IronGates_Mesolithic -1.341
  189. gendstat: Mbuti.DG Russia_Tyumen_HG 0.203
  190. gendstat: Mbuti.DG Mongolia_North_N -1.799
  191. gendstat: Mbuti.DG Onge.DG -1.457
  192. gendstat: Mbuti.DG Iran_GanjDareh_N -1.152
  193. gendstat: Mbuti.DG Kyrgyzstan_Aigyrzhal_BA -0.132
  194. gendstat: EHG CHG -1.251
  195. gendstat: EHG Levant_PPN 1.027
  196. gendstat: EHG Turkey_N 0.903
  197. gendstat: EHG Serbia_IronGates_Mesolithic 0.062
  198. gendstat: EHG Russia_Tyumen_HG 1.434
  199. gendstat: EHG Mongolia_North_N -0.370
  200. gendstat: EHG Onge.DG -0.148
  201. gendstat: EHG Iran_GanjDareh_N 0.282
  202. gendstat: EHG Kyrgyzstan_Aigyrzhal_BA 1.117
  203. gendstat: CHG Levant_PPN 2.231
  204. gendstat: CHG Turkey_N 2.496
  205. gendstat: CHG Serbia_IronGates_Mesolithic 1.472
  206. gendstat: CHG Russia_Tyumen_HG 2.191
  207. gendstat: CHG Mongolia_North_N 0.907
  208. gendstat: CHG Onge.DG 1.054
  209. gendstat: CHG Iran_GanjDareh_N 1.750
  210. gendstat: CHG Kyrgyzstan_Aigyrzhal_BA 2.360
  211. gendstat: Levant_PPN Turkey_N -0.441
  212. gendstat: Levant_PPN Serbia_IronGates_Mesolithic -1.212
  213. gendstat: Levant_PPN Russia_Tyumen_HG 0.311
  214. gendstat: Levant_PPN Mongolia_North_N -1.383
  215. gendstat: Levant_PPN Onge.DG -1.107
  216. gendstat: Levant_PPN Iran_GanjDareh_N -0.860
  217. gendstat: Levant_PPN Kyrgyzstan_Aigyrzhal_BA 0.000
  218. gendstat: Turkey_N Serbia_IronGates_Mesolithic -1.192
  219. gendstat: Turkey_N Russia_Tyumen_HG 0.620
  220. gendstat: Turkey_N Mongolia_North_N -1.370
  221. gendstat: Turkey_N Onge.DG -1.008
  222. gendstat: Turkey_N Iran_GanjDareh_N -0.720
  223. gendstat: Turkey_N Kyrgyzstan_Aigyrzhal_BA 0.345
  224. gendstat: Serbia_IronGates_Mesolithic Russia_Tyumen_HG 1.343
  225. gendstat: Serbia_IronGates_Mesolithic Mongolia_North_N -0.473
  226. gendstat: Serbia_IronGates_Mesolithic Onge.DG -0.222
  227. gendstat: Serbia_IronGates_Mesolithic Iran_GanjDareh_N 0.258
  228. gendstat: Serbia_IronGates_Mesolithic Kyrgyzstan_Aigyrzhal_BA 1.116
  229. gendstat: Russia_Tyumen_HG Mongolia_North_N -1.555
  230. gendstat: Russia_Tyumen_HG Onge.DG -1.278
  231. gendstat: Russia_Tyumen_HG Iran_GanjDareh_N -1.043
  232. gendstat: Russia_Tyumen_HG Kyrgyzstan_Aigyrzhal_BA -0.320
  233. gendstat: Mongolia_North_N Onge.DG 0.250
  234. gendstat: Mongolia_North_N Iran_GanjDareh_N 0.665
  235. gendstat: Mongolia_North_N Kyrgyzstan_Aigyrzhal_BA 1.418
  236. gendstat: Onge.DG Iran_GanjDareh_N 0.428
  237. gendstat: Onge.DG Kyrgyzstan_Aigyrzhal_BA 1.137
  238. gendstat: Iran_GanjDareh_N Kyrgyzstan_Aigyrzhal_BA 0.888
  239.  
  240. removing /tmp/fsx.342
  241. ##end of qpAdm: 10.615 seconds cpu 0.557 Mbytes in use
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