[sajid@xrm stack_vec_io_test]$ module list
Currently Loaded Modulefiles:
  1) neovim-0.3.1-gcc-7.3.0-u2fpr73   2) mpich-3.3-gcc-7.3.0-z5uiwmx      3) petsc-3.10.3-gcc-7.3.0-7fyzhap   4) libx11-1.6.5-gcc-7.3.0-fq4iuwd
[sajid@xrm stack_vec_io_test]$ rm ex10
[sajid@xrm stack_vec_io_test]$ make ex10
/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/mpich-3.3-z5uiwmx24jylnivuhlnqjjmm674ozj6x/bin/mpicc -o ex10.o -c -fPIC     -I/raid/home/sajid/packages
/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/petsc-3.10.3-7fyzhapqnl6qkcuidwugoizr6yt4ujil/include -I/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/s
uperlu-dist-6.1.0-gi3hicljihkga7x3ew66q5xdyunmmqc3/include -I/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/hdf5-1.10.4-ltstvsxvyjue2gxfegi4nvr6c5xg3z
ww/include -I/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/parmetis-4.0.3-hw3j2ss7mjsc5x5f2gaflirnuufzptil/include -I/raid/home/sajid/packages/spack/
opt/spack/linux-rhel7-x86_64/gcc-7.3.0/metis-5.1.0-nhgzn4kjskctzmzv35mstvd34nj2ugek/include -I/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/zlib-1.2.
11-ldu43taplg2nbkxtem346zq4ibhad64i/include    `pwd`/ex10.c
/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/mpich-3.3-z5uiwmx24jylnivuhlnqjjmm674ozj6x/bin/mpicc -fPIC    -o ex10 ex10.o  -Wl,-rpath,/raid/home/saj
id/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/petsc-3.10.3-7fyzhapqnl6qkcuidwugoizr6yt4ujil/lib -L/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-
7.3.0/petsc-3.10.3-7fyzhapqnl6qkcuidwugoizr6yt4ujil/lib -Wl,-rpath,/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/superlu-dist-6.1.0-gi3hicljihkga7x3e
w66q5xdyunmmqc3/lib -L/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/superlu-dist-6.1.0-gi3hicljihkga7x3ew66q5xdyunmmqc3/lib -Wl,-rpath,/raid/home/saj
id/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/intel-mkl-2019.0.117-wzqlcijwx7odz2x5chembudo5leqpfh2/compilers_and_libraries_2019.0.117/linux/mkl/lib/intel64 -L/rai
d/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/intel-mkl-2019.0.117-wzqlcijwx7odz2x5chembudo5leqpfh2/compilers_and_libraries_2019.0.117/linux/mkl/lib/inte
l64 /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so -Wl,-rpath,/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/hdf5-1.10.4-ltstvsxvyjue2gxfegi4nvr6
c5xg3zww/lib -L/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/hdf5-1.10.4-ltstvsxvyjue2gxfegi4nvr6c5xg3zww/lib -Wl,-rpath,/raid/home/sajid/packages/sp
ack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/parmetis-4.0.3-hw3j2ss7mjsc5x5f2gaflirnuufzptil/lib -L/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/parmet
is-4.0.3-hw3j2ss7mjsc5x5f2gaflirnuufzptil/lib -Wl,-rpath,/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/metis-5.1.0-nhgzn4kjskctzmzv35mstvd34nj2ugek/l
ib -L/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/metis-5.1.0-nhgzn4kjskctzmzv35mstvd34nj2ugek/lib -L/raid/home/sajid/packages/spack/opt/spack/linux
-rhel7-x86_64/gcc-7.3.0/zlib-1.2.11-ldu43taplg2nbkxtem346zq4ibhad64i/lib -Wl,-rpath,/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/mpich-3.3-z5uiwmx24
jylnivuhlnqjjmm674ozj6x/lib -L/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/mpich-3.3-z5uiwmx24jylnivuhlnqjjmm674ozj6x/lib -Wl,-rpath,/raid/home/saji
d/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-4.8.5/gcc-7.3.0-qrjpi76aeo4bysagruwwfii6oneh56lj/lib:/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-4.8.5/
gcc-7.3.0-qrjpi76aeo4bysagruwwfii6oneh56lj/lib64 -Wl,-rpath,/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-4.8.5/gcc-7.3.0-qrjpi76aeo4bysagruwwfii6oneh56lj/
lib/gcc/x86_64-pc-linux-gnu/7.3.0 -L/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-4.8.5/gcc-7.3.0-qrjpi76aeo4bysagruwwfii6oneh56lj/lib/gcc/x86_64-pc-linux-
gnu/7.3.0 -Wl,-rpath,/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-4.8.5/gcc-7.3.0-qrjpi76aeo4bysagruwwfii6oneh56lj/lib64 -L/raid/home/sajid/packages/spack
/opt/spack/linux-rhel7-x86_64/gcc-4.8.5/gcc-7.3.0-qrjpi76aeo4bysagruwwfii6oneh56lj/lib64 -Wl,-rpath,/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-4.8.5/gcc
-7.3.0-qrjpi76aeo4bysagruwwfii6oneh56lj/lib -L/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-4.8.5/gcc-7.3.0-qrjpi76aeo4bysagruwwfii6oneh56lj/lib -lpetsc -l
superlu_dist -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -lparmetis -lmetis -lm -lz -lX11 -lpthread -lstdc++ -ldl -lmpifort
-lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl
/bin/ld: warning: libgfortran.so.3, needed by /usr/lib64/liblapack.so.3, may conflict with libgfortran.so.4
/bin/ld: warning: libgfortran.so.3, needed by /usr/lib64/liblapack.so.3, may conflict with libgfortran.so.4
true ex10
rm ex10.o
[sajid@xrm stack_vec_io_test]$ ./ex10
Vec Object: 1 MPI processes
  type: seq
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writing vector in hdf5 to vector.dat ...
HDF5-DIAG: Error detected in HDF5 (1.10.4) MPI-process 0:
  #000: H5A.c line 279 in H5Acreate2(): unable to create attribute
    major: Attribute
    minor: Unable to initialize object
  #001: H5Aint.c line 323 in H5A__create(): unable to create attribute
    major: Attribute
    minor: Unable to create file
  #002: H5Aint.c line 167 in H5A__create_common(): attribute already exists
    major: Attribute
    minor: Object already exists
[0]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------
[0]PETSC ERROR: Error in external library
[0]PETSC ERROR: Error in HDF5 call H5Acreate2() Status -1
[0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting.
[0]PETSC ERROR: Petsc Release Version 3.10.3, Dec, 18, 2018
[0]PETSC ERROR: ./ex10 on a  named xrm by sajid Thu Dec 20 20:55:56 2018
[0]PETSC ERROR: Configure options --prefix=/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/petsc-3.10.3-7fyzhapqnl6qkcuidwugoizr6yt4ujil --with-ssl=0 -
-download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS= FFLAGS= CXXFLAGS= COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-cc=/raid/home/sajid/packages/spack/opt/spack/lin
ux-rhel7-x86_64/gcc-7.3.0/mpich-3.3-z5uiwmx24jylnivuhlnqjjmm674ozj6x/bin/mpicc --with-cxx=/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/mpich-3.3-z5u
iwmx24jylnivuhlnqjjmm674ozj6x/bin/mpic++ --with-fc=/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/mpich-3.3-z5uiwmx24jylnivuhlnqjjmm674ozj6x/bin/mpif9
0 --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 --with-blaslapack-lib="/raid/home/sajid/packages/spa
ck/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/intel-mkl-2019.0.117-wzqlcijwx7odz2x5chembudo5leqpfh2/compilers_and_libraries_2019.0.117/linux/mkl/lib/intel64/libmkl_intel_lp64.so
/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/intel-mkl-2019.0.117-wzqlcijwx7odz2x5chembudo5leqpfh2/compilers_and_libraries_2019.0.117/linux/mkl/lib/
intel64/libmkl_sequential.so /raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/intel-mkl-2019.0.117-wzqlcijwx7odz2x5chembudo5leqpfh2/compilers_and_librar
ies_2019.0.117/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-x=1 --with-clanguage=C --with-scalapack=0 --with-metis=1 --wit
h-metis-dir=/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/metis-5.1.0-nhgzn4kjskctzmzv35mstvd34nj2ugek --with-hdf5=1 --with-hdf5-dir=/raid/home/sajid
/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/hdf5-1.10.4-ltstvsxvyjue2gxfegi4nvr6c5xg3zww --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/raid/home/sajid/pack
ages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/parmetis-4.0.3-hw3j2ss7mjsc5x5f2gaflirnuufzptil --with-mumps=0 --with-trilinos=0 --with-cxx-dialect=C++11 --with-superlu_dis
t-include=/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/superlu-dist-6.1.0-gi3hicljihkga7x3ew66q5xdyunmmqc3/include --with-superlu_dist-lib=/raid/hom
e/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/superlu-dist-6.1.0-gi3hicljihkga7x3ew66q5xdyunmmqc3/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitespar
se=0 --with-zlib-include=/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/zlib-1.2.11-ldu43taplg2nbkxtem346zq4ibhad64i/include --with-zlib-lib="-L/raid/
home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/zlib-1.2.11-ldu43taplg2nbkxtem346zq4ibhad64i/lib -lz" --with-zlib=1
[0]PETSC ERROR: #1 PetscViewerHDF5WriteAttribute() line 637 in /tmp/sajid/spack-stage/spack-stage-w0PY3a/petsc-3.10.3/src/sys/classes/viewer/impls/hdf5/hdf5v.c
[0]PETSC ERROR: #2 VecView_MPI_HDF5() line 893 in /tmp/sajid/spack-stage/spack-stage-w0PY3a/petsc-3.10.3/src/vec/vec/impls/mpi/pdvec.c
[0]PETSC ERROR: #3 VecView_Seq() line 673 in /tmp/sajid/spack-stage/spack-stage-w0PY3a/petsc-3.10.3/src/vec/vec/impls/seq/bvec2.c
[0]PETSC ERROR: #4 VecView() line 590 in /tmp/sajid/spack-stage/spack-stage-w0PY3a/petsc-3.10.3/src/vec/vec/interface/vector.c
[0]PETSC ERROR: #5 main() line 48 in /raid/home/sajid/packages/xwp_petsc/temp/stack_vec_io_test/ex10.c
[0]PETSC ERROR: No PETSc Option Table entries
[0]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov----------
application called MPI_Abort(MPI_COMM_WORLD, 76) - process 0
[unset]: write_line error; fd=-1 buf=:cmd=abort exitcode=76
:
system msg for write_line failure : Bad file descriptor
[sajid@xrm stack_vec_io_test]$