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  1. Jun 07, 2017 9:26:30 AM org.apache.catalina.startup.ClassLoaderFactory validateFile
  2. WARNING: Problem with directory [/usr/share/tomcat7/common/classes], exists: [false], isDirectory: [false], canRead: [false]
  3. Jun 07, 2017 9:26:31 AM org.apache.catalina.startup.ClassLoaderFactory validateFile
  4. WARNING: Problem with directory [/usr/share/tomcat7/common], exists: [false], isDirectory: [false], canRead: [false]
  5. Jun 07, 2017 9:26:32 AM org.apache.catalina.startup.ClassLoaderFactory validateFile
  6. WARNING: Problem with directory [/usr/share/tomcat7/server/classes], exists: [false], isDirectory: [false], canRead: [false]
  7. Jun 07, 2017 9:26:32 AM org.apache.catalina.startup.ClassLoaderFactory validateFile
  8. WARNING: Problem with directory [/usr/share/tomcat7/server], exists: [false], isDirectory: [false], canRead: [false]
  9. Jun 07, 2017 9:26:32 AM org.apache.catalina.startup.ClassLoaderFactory validateFile
  10. WARNING: Problem with directory [/usr/share/tomcat7/shared/classes], exists: [false], isDirectory: [false], canRead: [false]
  11. Jun 07, 2017 9:26:32 AM org.apache.catalina.startup.ClassLoaderFactory validateFile
  12. WARNING: Problem with directory [/usr/share/tomcat7/shared], exists: [false], isDirectory: [false], canRead: [false]
  13. Jun 07, 2017 9:26:37 AM org.apache.coyote.AbstractProtocol init
  14. INFO: Initializing ProtocolHandler ["http-bio-8080"]
  15. Jun 07, 2017 9:26:37 AM org.apache.catalina.startup.Catalina load
  16. INFO: Initialization processed in 4487 ms
  17. Jun 07, 2017 9:26:38 AM org.apache.catalina.core.StandardService startInternal
  18. INFO: Starting service Catalina
  19. Jun 07, 2017 9:26:38 AM org.apache.catalina.core.StandardEngine startInternal
  20. INFO: Starting Servlet Engine: Apache Tomcat/7.0.52 (Ubuntu)
  21. Jun 07, 2017 9:26:38 AM org.apache.catalina.startup.HostConfig deployDescriptor
  22. INFO: Deploying configuration descriptor /etc/tomcat7/Catalina/localhost/host-manager.xml
  23. Jun 07, 2017 9:26:40 AM org.apache.catalina.startup.HostConfig deployDescriptor
  24. INFO: Deploying configuration descriptor /etc/tomcat7/Catalina/localhost/examples.xml
  25. Jun 07, 2017 9:26:40 AM org.apache.catalina.startup.TaglibUriRule body
  26. INFO: TLD skipped. URI: http://java.sun.com/jstl/core_rt is already defined
  27. Jun 07, 2017 9:26:40 AM org.apache.catalina.startup.TaglibUriRule body
  28. INFO: TLD skipped. URI: http://java.sun.com/jstl/core is already defined
  29. Jun 07, 2017 9:26:40 AM org.apache.catalina.startup.TaglibUriRule body
  30. INFO: TLD skipped. URI: http://java.sun.com/jsp/jstl/core is already defined
  31. Jun 07, 2017 9:26:40 AM org.apache.catalina.startup.TaglibUriRule body
  32. INFO: TLD skipped. URI: http://java.sun.com/jstl/fmt_rt is already defined
  33. Jun 07, 2017 9:26:40 AM org.apache.catalina.startup.TaglibUriRule body
  34. INFO: TLD skipped. URI: http://java.sun.com/jstl/fmt is already defined
  35. Jun 07, 2017 9:26:40 AM org.apache.catalina.startup.TaglibUriRule body
  36. INFO: TLD skipped. URI: http://java.sun.com/jsp/jstl/fmt is already defined
  37. Jun 07, 2017 9:26:40 AM org.apache.catalina.startup.TaglibUriRule body
  38. INFO: TLD skipped. URI: http://java.sun.com/jsp/jstl/functions is already defined
  39. Jun 07, 2017 9:26:40 AM org.apache.catalina.startup.TaglibUriRule body
  40. INFO: TLD skipped. URI: http://jakarta.apache.org/taglibs/standard/permittedTaglibs is already defined
  41. Jun 07, 2017 9:26:40 AM org.apache.catalina.startup.TaglibUriRule body
  42. INFO: TLD skipped. URI: http://jakarta.apache.org/taglibs/standard/scriptfree is already defined
  43. Jun 07, 2017 9:26:40 AM org.apache.catalina.startup.TaglibUriRule body
  44. INFO: TLD skipped. URI: http://java.sun.com/jstl/sql_rt is already defined
  45. Jun 07, 2017 9:26:40 AM org.apache.catalina.startup.TaglibUriRule body
  46. INFO: TLD skipped. URI: http://java.sun.com/jstl/sql is already defined
  47. Jun 07, 2017 9:26:40 AM org.apache.catalina.startup.TaglibUriRule body
  48. INFO: TLD skipped. URI: http://java.sun.com/jsp/jstl/sql is already defined
  49. Jun 07, 2017 9:26:40 AM org.apache.catalina.startup.TaglibUriRule body
  50. INFO: TLD skipped. URI: http://java.sun.com/jstl/xml_rt is already defined
  51. Jun 07, 2017 9:26:40 AM org.apache.catalina.startup.TaglibUriRule body
  52. INFO: TLD skipped. URI: http://java.sun.com/jstl/xml is already defined
  53. Jun 07, 2017 9:26:40 AM org.apache.catalina.startup.TaglibUriRule body
  54. INFO: TLD skipped. URI: http://java.sun.com/jsp/jstl/xml is already defined
  55. Jun 07, 2017 9:26:41 AM org.apache.catalina.startup.HostConfig deployDescriptor
  56. INFO: Deploying configuration descriptor /etc/tomcat7/Catalina/localhost/docs.xml
  57. Jun 07, 2017 9:26:41 AM org.apache.catalina.startup.HostConfig deployDescriptor
  58. INFO: Deploying configuration descriptor /etc/tomcat7/Catalina/localhost/manager.xml
  59. Jun 07, 2017 9:26:41 AM org.apache.catalina.startup.HostConfig deployWAR
  60. INFO: Deploying web application archive /var/lib/tomcat7/webapps/openmrs.war
  61. Jun 07, 2017 9:27:19 AM org.apache.catalina.startup.TaglibUriRule body
  62. INFO: TLD skipped. URI: http://www.springframework.org/tags/form is already defined
  63. Jun 07, 2017 9:27:19 AM org.apache.catalina.startup.TaglibUriRule body
  64. INFO: TLD skipped. URI: http://java.sun.com/jsp/jstl/functions is already defined
  65. Jun 07, 2017 9:27:19 AM org.apache.catalina.startup.TaglibUriRule body
  66. INFO: TLD skipped. URI: http://www.springframework.org/tags is already defined
  67. Jun 07, 2017 9:27:19 AM org.apache.catalina.startup.TaglibUriRule body
  68. INFO: TLD skipped. URI: http://jakarta.apache.org/taglibs/response-1.0 is already defined
  69. Jun 07, 2017 9:27:19 AM org.apache.catalina.startup.TaglibUriRule body
  70. INFO: TLD skipped. URI: http://java.sun.com/jstl/core_rt is already defined
  71. Jun 07, 2017 9:27:19 AM org.apache.catalina.startup.TaglibUriRule body
  72. INFO: TLD skipped. URI: http://jakarta.apache.org/taglibs/page-1.0 is already defined
  73. Jun 07, 2017 9:27:19 AM org.apache.catalina.startup.TaglibUriRule body
  74. INFO: TLD skipped. URI: http://jakarta.apache.org/taglibs/request-1.0 is already defined
  75. Jun 07, 2017 9:27:19 AM org.apache.catalina.startup.TaglibUriRule body
  76. INFO: TLD skipped. URI: http://jakarta.apache.org/taglibs/request-1.0 is already defined
  77. Jun 07, 2017 9:27:19 AM org.apache.catalina.startup.TaglibUriRule body
  78. INFO: TLD skipped. URI: http://www.springframework.org/tags is already defined
  79. Jun 07, 2017 9:29:06 AM org.apache.catalina.startup.TaglibUriRule body
  80. INFO: TLD skipped. URI: http://www.springframework.org/tags/form is already defined
  81. Jun 07, 2017 9:29:06 AM org.apache.catalina.startup.TaglibUriRule body
  82. INFO: TLD skipped. URI: http://jakarta.apache.org/taglibs/response-1.0 is already defined
  83. Jun 07, 2017 9:29:06 AM org.apache.catalina.startup.TaglibUriRule body
  84. INFO: TLD skipped. URI: http://java.sun.com/jstl/core_rt is already defined
  85. Jun 07, 2017 9:29:07 AM org.apache.catalina.startup.TaglibUriRule body
  86. INFO: TLD skipped. URI: http://java.sun.com/jsp/jstl/functions is already defined
  87. Jun 07, 2017 9:29:07 AM org.apache.catalina.startup.TaglibUriRule body
  88. INFO: TLD skipped. URI: http://jakarta.apache.org/taglibs/page-1.0 is already defined
  89. WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2113) |2017-06-07 09:29:08,162| Unable to find a runtime properties file at /var/lib/tomcat7/openmrs-runtime.properties
  90. WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2113) |2017-06-07 09:29:08,216| Unable to find a runtime properties file at /var/lib/tomcat7/openmrs-runtime.properties
  91. INFO - Listener.contextInitialized(174) |2017-06-07 09:29:08,217| Using runtime properties file: /usr/share/tomcat7/.OpenMRS/openmrs-runtime.properties
  92. INFO 6/7/17 9:29 AM:liquibase: Reading from `liquibasechangelog`
  93. WARNING 6/7/17 9:29 AM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  94. WARNING 6/7/17 9:29 AM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  95. WARNING 6/7/17 9:29 AM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  96. WARN - SimpleUrlHandlerMapping.registerHandlers(115) |2017-06-07 09:29:31,352| Neither 'urlMap' nor 'mappings' set on SimpleUrlHandlerMapping
  97. WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2113) |2017-06-07 09:29:31,701| Unable to find a runtime properties file at /var/lib/tomcat7/openmrs-runtime.properties
  98. INFO 6/7/17 9:29 AM:liquibase: Reading from `liquibasechangelog`
  99. WARNING 6/7/17 9:29 AM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  100. WARNING 6/7/17 9:29 AM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  101. WARNING 6/7/17 9:29 AM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  102. INFO - LoggingAdvice.invoke(115) |2017-06-07 09:29:34,545| In method AdministrationService.saveGlobalProperty. Arguments: GlobalProperty=property: legacyui.started value: true,
  103. INFO - LoggingAdvice.invoke(155) |2017-06-07 09:29:34,629| Exiting method saveGlobalProperty
  104. INFO - LoggingAdvice.invoke(115) |2017-06-07 09:29:34,638| In method AdministrationService.saveGlobalProperty. Arguments: GlobalProperty=property: legacyui.mandatory value: false,
  105. INFO - LoggingAdvice.invoke(155) |2017-06-07 09:29:34,649| Exiting method saveGlobalProperty
  106. INFO - LoggingAdvice.invoke(115) |2017-06-07 09:29:34,861| In method AdministrationService.saveGlobalProperty. Arguments: GlobalProperty=property: webservices.rest.started value: true,
  107. INFO - LoggingAdvice.invoke(155) |2017-06-07 09:29:34,869| Exiting method saveGlobalProperty
  108. INFO - LoggingAdvice.invoke(115) |2017-06-07 09:29:34,882| In method AdministrationService.saveGlobalProperty. Arguments: GlobalProperty=property: webservices.rest.mandatory value: false,
  109. INFO - LoggingAdvice.invoke(155) |2017-06-07 09:29:34,885| Exiting method saveGlobalProperty
  110. INFO 6/7/17 9:29 AM:liquibase: liquibase.xml is using schema version 1.9 rather than version 2.0
  111. INFO 6/7/17 9:29 AM:liquibase: Reading from `liquibasechangelog`
  112. INFO 6/7/17 9:29 AM:liquibase: Successfully acquired change log lock
  113. INFO 6/7/17 9:29 AM:liquibase: liquibase.xml is using schema version 1.9 rather than version 2.0
  114. INFO 6/7/17 9:29 AM:liquibase: Successfully released change log lock
  115. INFO - LoggingAdvice.invoke(115) |2017-06-07 09:29:35,946| In method AdministrationService.saveGlobalProperty. Arguments: GlobalProperty=property: fhir.started value: true,
  116. INFO - LoggingAdvice.invoke(155) |2017-06-07 09:29:35,948| Exiting method saveGlobalProperty
  117. INFO - LoggingAdvice.invoke(115) |2017-06-07 09:29:35,951| In method AdministrationService.saveGlobalProperty. Arguments: GlobalProperty=property: fhir.mandatory value: false,
  118. INFO - LoggingAdvice.invoke(155) |2017-06-07 09:29:35,954| Exiting method saveGlobalProperty
  119. INFO - LoggingAdvice.invoke(115) |2017-06-07 09:29:36,288| In method AdministrationService.saveGlobalProperty. Arguments: GlobalProperty=property: owa.started value: true,
  120. INFO - LoggingAdvice.invoke(155) |2017-06-07 09:29:36,299| Exiting method saveGlobalProperty
  121. INFO - LoggingAdvice.invoke(115) |2017-06-07 09:29:36,304| In method AdministrationService.saveGlobalProperty. Arguments: GlobalProperty=property: owa.mandatory value: false,
  122. INFO - LoggingAdvice.invoke(155) |2017-06-07 09:29:36,326| Exiting method saveGlobalProperty
  123. INFO - LoggingAdvice.invoke(115) |2017-06-07 09:29:36,986| In method SchedulerService.saveToMemento. Arguments:
  124. INFO - LoggingAdvice.invoke(155) |2017-06-07 09:29:37,001| Exiting method saveToMemento
  125. INFO - ServiceContext.startRefreshingContext(816) |2017-06-07 09:29:37,124| Refreshing Context
  126. WARN - SimpleUrlHandlerMapping.registerHandlers(115) |2017-06-07 09:29:47,247| Neither 'urlMap' nor 'mappings' set on SimpleUrlHandlerMapping
  127. WARN - SimpleUrlHandlerMapping.registerHandlers(115) |2017-06-07 09:29:51,981| Neither 'urlMap' nor 'mappings' set on SimpleUrlHandlerMapping
  128. INFO - ServiceContext.doneRefreshingContext(827) |2017-06-07 09:29:51,985| Done refreshing Context
  129. WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2113) |2017-06-07 09:30:01,754| Unable to find a runtime properties file at /var/lib/tomcat7/openmrs-runtime.properties
  130. Jun 07, 2017 9:30:01 AM org.apache.catalina.session.StandardManager doLoad
  131. SEVERE: ClassNotFoundException while loading persisted sessions: java.lang.ClassNotFoundException: org.openmrs.api.context.UserContext
  132. java.lang.ClassNotFoundException: org.openmrs.api.context.UserContext
  133. at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
  134. at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
  135. at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
  136. at java.lang.Class.forName0(Native Method)
  137. at java.lang.Class.forName(Class.java:348)
  138. at java.io.ObjectInputStream.resolveClass(ObjectInputStream.java:628)
  139. at java.io.ObjectInputStream.readNonProxyDesc(ObjectInputStream.java:1620)
  140. at java.io.ObjectInputStream.readClassDesc(ObjectInputStream.java:1521)
  141. at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1781)
  142. at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1353)
  143. at java.io.ObjectInputStream.readObject(ObjectInputStream.java:373)
  144. at org.apache.catalina.session.StandardSession.readObject(StandardSession.java:1595)
  145. at org.apache.catalina.session.StandardSession.readObjectData(StandardSession.java:1060)
  146. at org.apache.catalina.session.StandardManager.doLoad(StandardManager.java:285)
  147. at org.apache.catalina.session.StandardManager.load(StandardManager.java:202)
  148. at org.apache.catalina.session.StandardManager.startInternal(StandardManager.java:492)
  149. at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
  150. at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5513)
  151. at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
  152. at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:901)
  153. at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:877)
  154. at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:632)
  155. at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:1073)
  156. at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1857)
  157. at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
  158. at java.util.concurrent.FutureTask.run(FutureTask.java:266)
  159. at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
  160. at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
  161. at java.lang.Thread.run(Thread.java:745)
  162.  
  163. Jun 07, 2017 9:30:01 AM org.apache.catalina.session.StandardManager startInternal
  164. SEVERE: Exception loading sessions from persistent storage
  165. java.lang.ClassNotFoundException: org.openmrs.api.context.UserContext
  166. at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
  167. at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
  168. at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
  169. at java.lang.Class.forName0(Native Method)
  170. at java.lang.Class.forName(Class.java:348)
  171. at java.io.ObjectInputStream.resolveClass(ObjectInputStream.java:628)
  172. at java.io.ObjectInputStream.readNonProxyDesc(ObjectInputStream.java:1620)
  173. at java.io.ObjectInputStream.readClassDesc(ObjectInputStream.java:1521)
  174. at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1781)
  175. at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1353)
  176. at java.io.ObjectInputStream.readObject(ObjectInputStream.java:373)
  177. at org.apache.catalina.session.StandardSession.readObject(StandardSession.java:1595)
  178. at org.apache.catalina.session.StandardSession.readObjectData(StandardSession.java:1060)
  179. at org.apache.catalina.session.StandardManager.doLoad(StandardManager.java:285)
  180. at org.apache.catalina.session.StandardManager.load(StandardManager.java:202)
  181. at org.apache.catalina.session.StandardManager.startInternal(StandardManager.java:492)
  182. at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
  183. at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5513)
  184. at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
  185. at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:901)
  186. at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:877)
  187. at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:632)
  188. at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:1073)
  189. at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1857)
  190. at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
  191. at java.util.concurrent.FutureTask.run(FutureTask.java:266)
  192. at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
  193. at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
  194. at java.lang.Thread.run(Thread.java:745)
  195.  
  196. WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2113) |2017-06-07 09:30:02,357| Unable to find a runtime properties file at /var/lib/tomcat7/openmrs-runtime.properties
  197. Jun 07, 2017 9:30:02 AM org.apache.catalina.startup.HostConfig deployDirectory
  198. INFO: Deploying web application directory /var/lib/tomcat7/webapps/ROOT
  199. Jun 07, 2017 9:30:03 AM org.apache.coyote.AbstractProtocol start
  200. INFO: Starting ProtocolHandler ["http-bio-8080"]
  201. Jun 07, 2017 9:30:03 AM org.apache.catalina.startup.Catalina start
  202. INFO: Server startup in 99156 ms
  203. Jun 07, 2017 9:34:35 AM org.apache.jasper.compiler.TldLocationsCache tldScanJar
  204. INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time.
  205. Jun 07, 2017 9:44:24 AM org.apache.coyote.AbstractProtocol pause
  206. INFO: Pausing ProtocolHandler ["http-bio-8080"]
  207. Jun 07, 2017 9:44:24 AM org.apache.catalina.core.StandardService stopInternal
  208. INFO: Stopping service Catalina
  209. ERROR - SqlExceptionHelper.logExceptions(146) |2017-06-07 09:44:24,618| Communications link failure
  210.  
  211. The last packet successfully received from the server was 13,403 milliseconds ago. The last packet sent successfully to the server was 5 milliseconds ago.
  212. WARN - Context.shutdown(895) |2017-06-07 09:44:24,626| Error while shutting down scheduler service
  213. org.springframework.transaction.CannotCreateTransactionException: Could not open Hibernate Session for transaction; nested exception is org.hibernate.exception.JDBCConnectionException: Could not open connection
  214. at org.springframework.orm.hibernate4.HibernateTransactionManager.doBegin(HibernateTransactionManager.java:544)
  215. at org.springframework.transaction.support.AbstractPlatformTransactionManager.getTransaction(AbstractPlatformTransactionManager.java:373)
  216. at org.springframework.transaction.interceptor.TransactionAspectSupport.createTransactionIfNecessary(TransactionAspectSupport.java:457)
  217. at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:276)
  218. at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
  219. at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
  220. at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:207)
  221. at com.sun.proxy.$Proxy113.notifyPrivilegeListeners(Unknown Source)
  222. at sun.reflect.GeneratedMethodAccessor190.invoke(Unknown Source)
  223. at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
  224. at java.lang.reflect.Method.invoke(Method.java:498)
  225. at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:317)
  226. at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
  227. at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
  228. at org.openmrs.aop.LoggingAdvice.invoke(LoggingAdvice.java:121)
  229. at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
  230. at org.springframework.aop.framework.adapter.MethodBeforeAdviceInterceptor.invoke(MethodBeforeAdviceInterceptor.java:52)
  231. at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
  232. at org.springframework.aop.framework.adapter.MethodBeforeAdviceInterceptor.invoke(MethodBeforeAdviceInterceptor.java:52)
  233. at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
  234. at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:207)
  235. at com.sun.proxy.$Proxy114.notifyPrivilegeListeners(Unknown Source)
  236. at org.openmrs.api.context.UserContext.hasPrivilege(UserContext.java:324)
  237. at org.openmrs.api.context.Context.hasPrivilege(Context.java:649)
  238. at org.openmrs.aop.AuthorizationAdvice.before(AuthorizationAdvice.java:78)
  239. at org.springframework.aop.framework.adapter.MethodBeforeAdviceInterceptor.invoke(MethodBeforeAdviceInterceptor.java:51)
  240. at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
  241. at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:207)
  242. at com.sun.proxy.$Proxy138.onShutdown(Unknown Source)
  243. at org.openmrs.scheduler.SchedulerUtil.shutdown(SchedulerUtil.java:78)
  244. at org.openmrs.api.context.Context.shutdown(Context.java:892)
  245. at org.openmrs.web.Listener.contextDestroyed(Listener.java:558)
  246. at org.apache.catalina.core.StandardContext.listenerStop(StandardContext.java:5051)
  247. at org.apache.catalina.core.StandardContext.stopInternal(StandardContext.java:5696)
  248. at org.apache.catalina.util.LifecycleBase.stop(LifecycleBase.java:232)
  249. at org.apache.catalina.core.ContainerBase$StopChild.call(ContainerBase.java:1575)
  250. at org.apache.catalina.core.ContainerBase$StopChild.call(ContainerBase.java:1564)
  251. at java.util.concurrent.FutureTask.run(FutureTask.java:266)
  252. at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
  253. at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
  254. at java.lang.Thread.run(Thread.java:745)
  255. Caused by: org.hibernate.exception.JDBCConnectionException: Could not open connection
  256. at org.hibernate.exception.internal.SQLStateConversionDelegate.convert(SQLStateConversionDelegate.java:132)
  257. at org.hibernate.exception.internal.StandardSQLExceptionConverter.convert(StandardSQLExceptionConverter.java:49)
  258. at org.hibernate.engine.jdbc.spi.SqlExceptionHelper.convert(SqlExceptionHelper.java:126)
  259. at org.hibernate.engine.jdbc.spi.SqlExceptionHelper.convert(SqlExceptionHelper.java:112)
  260. at org.hibernate.engine.jdbc.internal.LogicalConnectionImpl.obtainConnection(LogicalConnectionImpl.java:235)
  261. at org.hibernate.engine.jdbc.internal.LogicalConnectionImpl.getConnection(LogicalConnectionImpl.java:171)
  262. at org.hibernate.internal.SessionImpl.connection(SessionImpl.java:450)
  263. at org.springframework.orm.hibernate4.HibernateTransactionManager.doBegin(HibernateTransactionManager.java:450)
  264. ... 40 more
  265. Caused by: com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: Communications link failure
  266.  
  267. The last packet successfully received from the server was 13,403 milliseconds ago. The last packet sent successfully to the server was 5 milliseconds ago.
  268. at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
  269. at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
  270. at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
  271. at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
  272. at com.mysql.jdbc.Util.handleNewInstance(Util.java:411)
  273. at com.mysql.jdbc.SQLError.createCommunicationsException(SQLError.java:1129)
  274. at com.mysql.jdbc.MysqlIO.reuseAndReadPacket(MysqlIO.java:3720)
  275. at com.mysql.jdbc.MysqlIO.reuseAndReadPacket(MysqlIO.java:3609)
  276. at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:4160)
  277. at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:2617)
  278. at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:2778)
  279. at com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2819)
  280. at com.mysql.jdbc.ConnectionImpl.setAutoCommit(ConnectionImpl.java:5355)
  281. at com.mchange.v2.c3p0.impl.NewProxyConnection.setAutoCommit(NewProxyConnection.java:912)
  282. at org.hibernate.c3p0.internal.C3P0ConnectionProvider.getConnection(C3P0ConnectionProvider.java:95)
  283. at org.hibernate.internal.AbstractSessionImpl$NonContextualJdbcConnectionAccess.obtainConnection(AbstractSessionImpl.java:380)
  284. at org.hibernate.engine.jdbc.internal.LogicalConnectionImpl.obtainConnection(LogicalConnectionImpl.java:228)
  285. ... 43 more
  286. Caused by: java.io.EOFException: Can not read response from server. Expected to read 4 bytes, read 0 bytes before connection was unexpectedly lost.
  287. at com.mysql.jdbc.MysqlIO.readFully(MysqlIO.java:3166)
  288. at com.mysql.jdbc.MysqlIO.reuseAndReadPacket(MysqlIO.java:3620)
  289. ... 53 more
  290. INFO - HibernateContextDAO.showUsageStatistics(372) |2017-06-07 09:44:24,704| QUERY: from User u where (u.username = ? or u.systemId = ? or u.systemId = ?) and u.retired = '0'
  291. INFO - HibernateContextDAO.showUsageStatistics(374) |2017-06-07 09:44:24,705| Cache Hit Count : 0
  292. INFO - HibernateContextDAO.showUsageStatistics(375) |2017-06-07 09:44:24,706| Cache Miss Count: 0
  293. INFO - HibernateContextDAO.showUsageStatistics(376) |2017-06-07 09:44:24,706| Cache Put Count : 0
  294. INFO - HibernateContextDAO.showUsageStatistics(377) |2017-06-07 09:44:24,709| Execution Count : 1
  295. INFO - HibernateContextDAO.showUsageStatistics(378) |2017-06-07 09:44:24,709| Average time : 21
  296. INFO - HibernateContextDAO.showUsageStatistics(379) |2017-06-07 09:44:24,709| Row Count : 1
  297. INFO - HibernateContextDAO.showUsageStatistics(372) |2017-06-07 09:44:24,710| QUERY: [CRITERIA] select this_.task_config_id as task_con1_85_0_, this_.uuid as uuid2_85_0_, this_.name as name3_85_0_, this_.description as descript4_85_0_, this_.schedulable_class as schedula5_85_0_, this_.repeat_interval as repeat_i6_85_0_, this_.start_time as start_ti7_85_0_, this_.start_time_pattern as start_ti8_85_0_, this_.last_execution_time as last_exe9_85_0_, this_.start_on_startup as start_o10_85_0_, this_.started as started11_85_0_, this_.created_by as created12_85_0_, this_.changed_by as changed13_85_0_, this_.date_created as date_cr14_85_0_, this_.date_changed as date_ch15_85_0_ from scheduler_task_config this_
  298. INFO - HibernateContextDAO.showUsageStatistics(374) |2017-06-07 09:44:24,710| Cache Hit Count : 0
  299. INFO - HibernateContextDAO.showUsageStatistics(375) |2017-06-07 09:44:24,710| Cache Miss Count: 0
  300. INFO - HibernateContextDAO.showUsageStatistics(376) |2017-06-07 09:44:24,711| Cache Put Count : 0
  301. INFO - HibernateContextDAO.showUsageStatistics(377) |2017-06-07 09:44:24,712| Execution Count : 2
  302. INFO - HibernateContextDAO.showUsageStatistics(378) |2017-06-07 09:44:24,712| Average time : 7
  303. INFO - HibernateContextDAO.showUsageStatistics(379) |2017-06-07 09:44:24,712| Row Count : 2
  304. INFO - HibernateContextDAO.showUsageStatistics(372) |2017-06-07 09:44:24,713| QUERY: select salt from users where user_id = ?
  305. INFO - HibernateContextDAO.showUsageStatistics(374) |2017-06-07 09:44:24,715| Cache Hit Count : 0
  306. INFO - HibernateContextDAO.showUsageStatistics(375) |2017-06-07 09:44:24,717| Cache Miss Count: 0
  307. INFO - HibernateContextDAO.showUsageStatistics(376) |2017-06-07 09:44:24,717| Cache Put Count : 0
  308. INFO - HibernateContextDAO.showUsageStatistics(377) |2017-06-07 09:44:24,717| Execution Count : 1
  309. INFO - HibernateContextDAO.showUsageStatistics(378) |2017-06-07 09:44:24,717| Average time : 1
  310. INFO - HibernateContextDAO.showUsageStatistics(379) |2017-06-07 09:44:24,718| Row Count : 1
  311. INFO - HibernateContextDAO.showUsageStatistics(372) |2017-06-07 09:44:24,718| QUERY: select password from users where user_id = ?
  312. INFO - HibernateContextDAO.showUsageStatistics(374) |2017-06-07 09:44:24,718| Cache Hit Count : 0
  313. INFO - HibernateContextDAO.showUsageStatistics(375) |2017-06-07 09:44:24,719| Cache Miss Count: 0
  314. INFO - HibernateContextDAO.showUsageStatistics(376) |2017-06-07 09:44:24,720| Cache Put Count : 0
  315. INFO - HibernateContextDAO.showUsageStatistics(377) |2017-06-07 09:44:24,720| Execution Count : 1
  316. INFO - HibernateContextDAO.showUsageStatistics(378) |2017-06-07 09:44:24,720| Average time : 1
  317. INFO - HibernateContextDAO.showUsageStatistics(379) |2017-06-07 09:44:24,721| Row Count : 1
  318. INFO - HibernateContextDAO.showUsageStatistics(372) |2017-06-07 09:44:24,721| QUERY: [CRITERIA] select this_.alert_id as alert_id1_51_1_, this_.text as text2_51_1_, this_.satisfied_by_any as satisfie3_51_1_, this_.alert_read as alert_re4_51_1_, this_.date_to_expire as date_to_5_51_1_, this_.creator as creator6_51_1_, this_.date_created as date_cre7_51_1_, this_.changed_by as changed_8_51_1_, this_.date_changed as date_cha9_51_1_, this_.uuid as uuid10_51_1_, recipient1_.alert_id as alert_id1_52_0_, recipient1_.user_id as user_id2_52_0_, recipient1_.alert_read as alert_re3_52_0_, recipient1_.date_changed as date_cha4_52_0_, recipient1_.uuid as uuid5_52_0_ from notification_alert this_ inner join notification_alert_recipient recipient1_ on this_.alert_id=recipient1_.alert_id where recipient1_.user_id=? and (this_.date_to_expire is null or this_.date_to_expire>?) and this_.alert_read=? and recipient1_.alert_read=? order by this_.date_changed desc
  319. INFO - HibernateContextDAO.showUsageStatistics(374) |2017-06-07 09:44:24,721| Cache Hit Count : 0
  320. INFO - HibernateContextDAO.showUsageStatistics(375) |2017-06-07 09:44:24,721| Cache Miss Count: 0
  321. INFO - HibernateContextDAO.showUsageStatistics(376) |2017-06-07 09:44:24,721| Cache Put Count : 0
  322. INFO - HibernateContextDAO.showUsageStatistics(377) |2017-06-07 09:44:24,722| Execution Count : 2
  323. INFO - HibernateContextDAO.showUsageStatistics(378) |2017-06-07 09:44:24,723| Average time : 6
  324. INFO - HibernateContextDAO.showUsageStatistics(379) |2017-06-07 09:44:24,723| Row Count : 0
  325. Jun 07, 2017 9:44:24 AM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads
  326. SEVERE: The web application [/openmrs] appears to have started a thread named [Thread-2] but has failed to stop it. This is very likely to create a memory leak.
  327. Jun 07, 2017 9:44:24 AM org.apache.catalina.loader.WebappClassLoader checkThreadLocalMapForLeaks
  328. SEVERE: The web application [/openmrs] created a ThreadLocal with key of type [org.apache.log4j.helpers.ThreadLocalMap] (value [org.apache.log4j.helpers.ThreadLocalMap@5b9a689b]) and a value of type [java.util.Hashtable] (value [{}]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.
  329. Jun 07, 2017 9:44:24 AM org.apache.catalina.loader.WebappClassLoader checkThreadLocalMapForLeaks
  330. SEVERE: The web application [/openmrs] created a ThreadLocal with key of type [org.apache.log4j.helpers.ThreadLocalMap] (value [org.apache.log4j.helpers.ThreadLocalMap@5b9a689b]) and a value of type [java.util.Hashtable] (value [{}]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.
  331. Jun 07, 2017 9:44:25 AM org.apache.coyote.AbstractProtocol stop
  332. INFO: Stopping ProtocolHandler ["http-bio-8080"]
  333. Jun 07, 2017 9:44:25 AM org.apache.coyote.AbstractProtocol destroy
  334. INFO: Destroying ProtocolHandler ["http-bio-8080"]
  335. Jun 07, 2017 9:52:37 AM org.apache.catalina.startup.ClassLoaderFactory validateFile
  336. WARNING: Problem with directory [/usr/share/tomcat7/common/classes], exists: [false], isDirectory: [false], canRead: [false]
  337. Jun 07, 2017 9:52:37 AM org.apache.catalina.startup.ClassLoaderFactory validateFile
  338. WARNING: Problem with directory [/usr/share/tomcat7/common], exists: [false], isDirectory: [false], canRead: [false]
  339. Jun 07, 2017 9:52:38 AM org.apache.catalina.startup.ClassLoaderFactory validateFile
  340. WARNING: Problem with directory [/usr/share/tomcat7/server/classes], exists: [false], isDirectory: [false], canRead: [false]
  341. Jun 07, 2017 9:52:38 AM org.apache.catalina.startup.ClassLoaderFactory validateFile
  342. WARNING: Problem with directory [/usr/share/tomcat7/server], exists: [false], isDirectory: [false], canRead: [false]
  343. Jun 07, 2017 9:52:38 AM org.apache.catalina.startup.ClassLoaderFactory validateFile
  344. WARNING: Problem with directory [/usr/share/tomcat7/shared/classes], exists: [false], isDirectory: [false], canRead: [false]
  345. Jun 07, 2017 9:52:38 AM org.apache.catalina.startup.ClassLoaderFactory validateFile
  346. WARNING: Problem with directory [/usr/share/tomcat7/shared], exists: [false], isDirectory: [false], canRead: [false]
  347. Jun 07, 2017 9:54:27 AM org.apache.coyote.AbstractProtocol init
  348. INFO: Initializing ProtocolHandler ["http-bio-8080"]
  349. Jun 07, 2017 9:54:27 AM org.apache.catalina.startup.Catalina load
  350. INFO: Initialization processed in 2148 ms
  351. Jun 07, 2017 9:54:27 AM org.apache.catalina.core.StandardService startInternal
  352. INFO: Starting service Catalina
  353. Jun 07, 2017 9:54:27 AM org.apache.catalina.core.StandardEngine startInternal
  354. INFO: Starting Servlet Engine: Apache Tomcat/7.0.52 (Ubuntu)
  355. Jun 07, 2017 9:54:27 AM org.apache.catalina.startup.HostConfig deployDescriptor
  356. INFO: Deploying configuration descriptor /etc/tomcat7/Catalina/localhost/host-manager.xml
  357. Jun 07, 2017 9:54:29 AM org.apache.catalina.startup.HostConfig deployDescriptor
  358. INFO: Deploying configuration descriptor /etc/tomcat7/Catalina/localhost/examples.xml
  359. Jun 07, 2017 9:54:29 AM org.apache.catalina.startup.TaglibUriRule body
  360. INFO: TLD skipped. URI: http://java.sun.com/jstl/core_rt is already defined
  361. Jun 07, 2017 9:54:29 AM org.apache.catalina.startup.TaglibUriRule body
  362. INFO: TLD skipped. URI: http://java.sun.com/jstl/core is already defined
  363. Jun 07, 2017 9:54:29 AM org.apache.catalina.startup.TaglibUriRule body
  364. INFO: TLD skipped. URI: http://java.sun.com/jsp/jstl/core is already defined
  365. Jun 07, 2017 9:54:30 AM org.apache.catalina.startup.TaglibUriRule body
  366. INFO: TLD skipped. URI: http://java.sun.com/jstl/fmt_rt is already defined
  367. Jun 07, 2017 9:54:30 AM org.apache.catalina.startup.TaglibUriRule body
  368. INFO: TLD skipped. URI: http://java.sun.com/jstl/fmt is already defined
  369. Jun 07, 2017 9:54:30 AM org.apache.catalina.startup.TaglibUriRule body
  370. INFO: TLD skipped. URI: http://java.sun.com/jsp/jstl/fmt is already defined
  371. Jun 07, 2017 9:54:30 AM org.apache.catalina.startup.TaglibUriRule body
  372. INFO: TLD skipped. URI: http://java.sun.com/jsp/jstl/functions is already defined
  373. Jun 07, 2017 9:54:30 AM org.apache.catalina.startup.TaglibUriRule body
  374. INFO: TLD skipped. URI: http://jakarta.apache.org/taglibs/standard/permittedTaglibs is already defined
  375. Jun 07, 2017 9:54:30 AM org.apache.catalina.startup.TaglibUriRule body
  376. INFO: TLD skipped. URI: http://jakarta.apache.org/taglibs/standard/scriptfree is already defined
  377. Jun 07, 2017 9:54:30 AM org.apache.catalina.startup.TaglibUriRule body
  378. INFO: TLD skipped. URI: http://java.sun.com/jstl/sql_rt is already defined
  379. Jun 07, 2017 9:54:30 AM org.apache.catalina.startup.TaglibUriRule body
  380. INFO: TLD skipped. URI: http://java.sun.com/jstl/sql is already defined
  381. Jun 07, 2017 9:54:30 AM org.apache.catalina.startup.TaglibUriRule body
  382. INFO: TLD skipped. URI: http://java.sun.com/jsp/jstl/sql is already defined
  383. Jun 07, 2017 9:54:30 AM org.apache.catalina.startup.TaglibUriRule body
  384. INFO: TLD skipped. URI: http://java.sun.com/jstl/xml_rt is already defined
  385. Jun 07, 2017 9:54:30 AM org.apache.catalina.startup.TaglibUriRule body
  386. INFO: TLD skipped. URI: http://java.sun.com/jstl/xml is already defined
  387. Jun 07, 2017 9:54:30 AM org.apache.catalina.startup.TaglibUriRule body
  388. INFO: TLD skipped. URI: http://java.sun.com/jsp/jstl/xml is already defined
  389. Jun 07, 2017 9:54:30 AM org.apache.catalina.startup.HostConfig deployDescriptor
  390. INFO: Deploying configuration descriptor /etc/tomcat7/Catalina/localhost/docs.xml
  391. Jun 07, 2017 9:54:30 AM org.apache.catalina.startup.HostConfig deployDescriptor
  392. INFO: Deploying configuration descriptor /etc/tomcat7/Catalina/localhost/manager.xml
  393. Jun 07, 2017 9:54:31 AM org.apache.catalina.startup.HostConfig deployWAR
  394. INFO: Deploying web application archive /var/lib/tomcat7/webapps/openmrs.war
  395. Jun 07, 2017 9:54:48 AM org.apache.catalina.startup.TaglibUriRule body
  396. INFO: TLD skipped. URI: http://www.springframework.org/tags/form is already defined
  397. Jun 07, 2017 9:54:48 AM org.apache.catalina.startup.TaglibUriRule body
  398. INFO: TLD skipped. URI: http://java.sun.com/jsp/jstl/functions is already defined
  399. Jun 07, 2017 9:54:48 AM org.apache.catalina.startup.TaglibUriRule body
  400. INFO: TLD skipped. URI: http://www.springframework.org/tags is already defined
  401. Jun 07, 2017 9:54:48 AM org.apache.catalina.startup.TaglibUriRule body
  402. INFO: TLD skipped. URI: http://jakarta.apache.org/taglibs/response-1.0 is already defined
  403. Jun 07, 2017 9:54:48 AM org.apache.catalina.startup.TaglibUriRule body
  404. INFO: TLD skipped. URI: http://java.sun.com/jstl/core_rt is already defined
  405. Jun 07, 2017 9:54:48 AM org.apache.catalina.startup.TaglibUriRule body
  406. INFO: TLD skipped. URI: http://jakarta.apache.org/taglibs/page-1.0 is already defined
  407. Jun 07, 2017 9:54:48 AM org.apache.catalina.startup.TaglibUriRule body
  408. INFO: TLD skipped. URI: http://jakarta.apache.org/taglibs/request-1.0 is already defined
  409. Jun 07, 2017 9:54:48 AM org.apache.catalina.startup.TaglibUriRule body
  410. INFO: TLD skipped. URI: http://jakarta.apache.org/taglibs/request-1.0 is already defined
  411. Jun 07, 2017 9:54:48 AM org.apache.catalina.startup.TaglibUriRule body
  412. INFO: TLD skipped. URI: http://www.springframework.org/tags is already defined
  413. Jun 07, 2017 9:54:48 AM org.apache.catalina.startup.TaglibUriRule body
  414. INFO: TLD skipped. URI: http://www.springframework.org/tags/form is already defined
  415. Jun 07, 2017 9:54:48 AM org.apache.catalina.startup.TaglibUriRule body
  416. INFO: TLD skipped. URI: http://jakarta.apache.org/taglibs/response-1.0 is already defined
  417. Jun 07, 2017 9:54:48 AM org.apache.catalina.startup.TaglibUriRule body
  418. INFO: TLD skipped. URI: http://java.sun.com/jstl/core_rt is already defined
  419. Jun 07, 2017 9:54:48 AM org.apache.catalina.startup.TaglibUriRule body
  420. INFO: TLD skipped. URI: http://java.sun.com/jsp/jstl/functions is already defined
  421. Jun 07, 2017 9:54:48 AM org.apache.catalina.startup.TaglibUriRule body
  422. INFO: TLD skipped. URI: http://jakarta.apache.org/taglibs/page-1.0 is already defined
  423. WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2113) |2017-06-07 09:54:49,347| Unable to find a runtime properties file at /var/lib/tomcat7/openmrs-runtime.properties
  424. WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2113) |2017-06-07 09:54:49,408| Unable to find a runtime properties file at /var/lib/tomcat7/openmrs-runtime.properties
  425. INFO - Listener.contextInitialized(174) |2017-06-07 09:54:49,409| Using runtime properties file: /usr/share/tomcat7/.OpenMRS/openmrs-runtime.properties
  426. INFO 6/7/17 9:54 AM:liquibase: Reading from `liquibasechangelog`
  427. WARNING 6/7/17 9:54 AM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  428. WARNING 6/7/17 9:54 AM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  429. WARNING 6/7/17 9:54 AM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  430. WARN - SimpleUrlHandlerMapping.registerHandlers(115) |2017-06-07 09:55:11,253| Neither 'urlMap' nor 'mappings' set on SimpleUrlHandlerMapping
  431. WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2113) |2017-06-07 09:55:11,532| Unable to find a runtime properties file at /var/lib/tomcat7/openmrs-runtime.properties
  432. INFO 6/7/17 9:55 AM:liquibase: Reading from `liquibasechangelog`
  433. WARNING 6/7/17 9:55 AM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  434. WARNING 6/7/17 9:55 AM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  435. WARNING 6/7/17 9:55 AM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  436. INFO - LoggingAdvice.invoke(115) |2017-06-07 09:55:14,836| In method AdministrationService.saveGlobalProperty. Arguments: GlobalProperty=property: legacyui.started value: true,
  437. INFO - LoggingAdvice.invoke(155) |2017-06-07 09:55:14,897| Exiting method saveGlobalProperty
  438. INFO - LoggingAdvice.invoke(115) |2017-06-07 09:55:14,902| In method AdministrationService.saveGlobalProperty. Arguments: GlobalProperty=property: legacyui.mandatory value: false,
  439. INFO - LoggingAdvice.invoke(155) |2017-06-07 09:55:14,914| Exiting method saveGlobalProperty
  440. INFO - LoggingAdvice.invoke(115) |2017-06-07 09:55:15,183| In method AdministrationService.saveGlobalProperty. Arguments: GlobalProperty=property: webservices.rest.started value: true,
  441. INFO - LoggingAdvice.invoke(155) |2017-06-07 09:55:15,195| Exiting method saveGlobalProperty
  442. INFO - LoggingAdvice.invoke(115) |2017-06-07 09:55:15,203| In method AdministrationService.saveGlobalProperty. Arguments: GlobalProperty=property: webservices.rest.mandatory value: false,
  443. INFO - LoggingAdvice.invoke(155) |2017-06-07 09:55:15,207| Exiting method saveGlobalProperty
  444. INFO 6/7/17 9:55 AM:liquibase: liquibase.xml is using schema version 1.9 rather than version 2.0
  445. INFO 6/7/17 9:55 AM:liquibase: Reading from `liquibasechangelog`
  446. INFO 6/7/17 9:55 AM:liquibase: Successfully acquired change log lock
  447. INFO 6/7/17 9:55 AM:liquibase: liquibase.xml is using schema version 1.9 rather than version 2.0
  448. INFO 6/7/17 9:55 AM:liquibase: Successfully released change log lock
  449. INFO - LoggingAdvice.invoke(115) |2017-06-07 09:55:16,593| In method AdministrationService.saveGlobalProperty. Arguments: GlobalProperty=property: fhir.started value: true,
  450. INFO - LoggingAdvice.invoke(155) |2017-06-07 09:55:16,598| Exiting method saveGlobalProperty
  451. INFO - LoggingAdvice.invoke(115) |2017-06-07 09:55:16,604| In method AdministrationService.saveGlobalProperty. Arguments: GlobalProperty=property: fhir.mandatory value: false,
  452. INFO - LoggingAdvice.invoke(155) |2017-06-07 09:55:16,609| Exiting method saveGlobalProperty
  453. INFO - LoggingAdvice.invoke(115) |2017-06-07 09:55:16,964| In method AdministrationService.saveGlobalProperty. Arguments: GlobalProperty=property: owa.started value: true,
  454. INFO - LoggingAdvice.invoke(155) |2017-06-07 09:55:16,984| Exiting method saveGlobalProperty
  455. INFO - LoggingAdvice.invoke(115) |2017-06-07 09:55:16,995| In method AdministrationService.saveGlobalProperty. Arguments: GlobalProperty=property: owa.mandatory value: false,
  456. INFO - LoggingAdvice.invoke(155) |2017-06-07 09:55:17,003| Exiting method saveGlobalProperty
  457. INFO - LoggingAdvice.invoke(115) |2017-06-07 09:55:17,634| In method SchedulerService.saveToMemento. Arguments:
  458. INFO - LoggingAdvice.invoke(155) |2017-06-07 09:55:17,659| Exiting method saveToMemento
  459. INFO - ServiceContext.startRefreshingContext(816) |2017-06-07 09:55:17,817| Refreshing Context
  460. WARN - SimpleUrlHandlerMapping.registerHandlers(115) |2017-06-07 09:55:26,930| Neither 'urlMap' nor 'mappings' set on SimpleUrlHandlerMapping
  461. WARN - SimpleUrlHandlerMapping.registerHandlers(115) |2017-06-07 09:55:30,234| Neither 'urlMap' nor 'mappings' set on SimpleUrlHandlerMapping
  462. INFO - ServiceContext.doneRefreshingContext(827) |2017-06-07 09:55:30,238| Done refreshing Context
  463. WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2113) |2017-06-07 09:55:39,155| Unable to find a runtime properties file at /var/lib/tomcat7/openmrs-runtime.properties
  464. Jun 07, 2017 9:55:39 AM org.apache.catalina.session.StandardManager doLoad
  465. SEVERE: ClassNotFoundException while loading persisted sessions: java.lang.ClassNotFoundException: org.openmrs.api.context.UserContext
  466. java.lang.ClassNotFoundException: org.openmrs.api.context.UserContext
  467. at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
  468. at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
  469. at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
  470. at java.lang.Class.forName0(Native Method)
  471. at java.lang.Class.forName(Class.java:348)
  472. at java.io.ObjectInputStream.resolveClass(ObjectInputStream.java:628)
  473. at java.io.ObjectInputStream.readNonProxyDesc(ObjectInputStream.java:1620)
  474. at java.io.ObjectInputStream.readClassDesc(ObjectInputStream.java:1521)
  475. at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1781)
  476. at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1353)
  477. at java.io.ObjectInputStream.readObject(ObjectInputStream.java:373)
  478. at org.apache.catalina.session.StandardSession.readObject(StandardSession.java:1595)
  479. at org.apache.catalina.session.StandardSession.readObjectData(StandardSession.java:1060)
  480. at org.apache.catalina.session.StandardManager.doLoad(StandardManager.java:285)
  481. at org.apache.catalina.session.StandardManager.load(StandardManager.java:202)
  482. at org.apache.catalina.session.StandardManager.startInternal(StandardManager.java:492)
  483. at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
  484. at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5513)
  485. at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
  486. at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:901)
  487. at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:877)
  488. at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:632)
  489. at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:1073)
  490. at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1857)
  491. at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
  492. at java.util.concurrent.FutureTask.run(FutureTask.java:266)
  493. at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
  494. at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
  495. at java.lang.Thread.run(Thread.java:745)
  496.  
  497. Jun 07, 2017 9:55:39 AM org.apache.catalina.session.StandardManager startInternal
  498. SEVERE: Exception loading sessions from persistent storage
  499. java.lang.ClassNotFoundException: org.openmrs.api.context.UserContext
  500. at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
  501. at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
  502. at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
  503. at java.lang.Class.forName0(Native Method)
  504. at java.lang.Class.forName(Class.java:348)
  505. at java.io.ObjectInputStream.resolveClass(ObjectInputStream.java:628)
  506. at java.io.ObjectInputStream.readNonProxyDesc(ObjectInputStream.java:1620)
  507. at java.io.ObjectInputStream.readClassDesc(ObjectInputStream.java:1521)
  508. at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1781)
  509. at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1353)
  510. at java.io.ObjectInputStream.readObject(ObjectInputStream.java:373)
  511. at org.apache.catalina.session.StandardSession.readObject(StandardSession.java:1595)
  512. at org.apache.catalina.session.StandardSession.readObjectData(StandardSession.java:1060)
  513. at org.apache.catalina.session.StandardManager.doLoad(StandardManager.java:285)
  514. at org.apache.catalina.session.StandardManager.load(StandardManager.java:202)
  515. at org.apache.catalina.session.StandardManager.startInternal(StandardManager.java:492)
  516. at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
  517. at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5513)
  518. at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
  519. at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:901)
  520. at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:877)
  521. at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:632)
  522. at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:1073)
  523. at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1857)
  524. at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
  525. at java.util.concurrent.FutureTask.run(FutureTask.java:266)
  526. at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
  527. at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
  528. at java.lang.Thread.run(Thread.java:745)
  529.  
  530. WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2113) |2017-06-07 09:55:39,351| Unable to find a runtime properties file at /var/lib/tomcat7/openmrs-runtime.properties
  531. Jun 07, 2017 9:55:39 AM org.apache.catalina.startup.HostConfig deployDirectory
  532. INFO: Deploying web application directory /var/lib/tomcat7/webapps/ROOT
  533. Jun 07, 2017 9:55:40 AM org.apache.coyote.AbstractProtocol start
  534. INFO: Starting ProtocolHandler ["http-bio-8080"]
  535. Jun 07, 2017 9:55:40 AM org.apache.catalina.startup.Catalina start
  536. INFO: Server startup in 72481 ms
  537. Jun 07, 2017 10:47:24 AM org.apache.jasper.compiler.TldLocationsCache tldScanJar
  538. INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time.
  539. INFO - HibernateContextDAO.authenticate(203) |2017-06-07 10:48:46,640| Failed login attempt (login=admin) - Invalid username and/or password: admin
  540. INFO - HibernateContextDAO.authenticate(203) |2017-06-07 10:49:02,657| Failed login attempt (login=admin) - Invalid username and/or password: admin
  541. Jun 07, 2017 10:49:20 AM org.apache.coyote.AbstractProtocol pause
  542. INFO: Pausing ProtocolHandler ["http-bio-8080"]
  543. Jun 07, 2017 10:49:20 AM org.apache.catalina.core.StandardService stopInternal
  544. INFO: Stopping service Catalina
  545. INFO - HibernateContextDAO.showUsageStatistics(372) |2017-06-07 10:49:20,464| QUERY: from User u where (u.username = ? or u.systemId = ? or u.systemId = ?) and u.retired = '0'
  546. INFO - HibernateContextDAO.showUsageStatistics(374) |2017-06-07 10:49:20,464| Cache Hit Count : 0
  547. INFO - HibernateContextDAO.showUsageStatistics(375) |2017-06-07 10:49:20,465| Cache Miss Count: 0
  548. INFO - HibernateContextDAO.showUsageStatistics(376) |2017-06-07 10:49:20,465| Cache Put Count : 0
  549. INFO - HibernateContextDAO.showUsageStatistics(377) |2017-06-07 10:49:20,466| Execution Count : 2
  550. INFO - HibernateContextDAO.showUsageStatistics(378) |2017-06-07 10:49:20,466| Average time : 50
  551. INFO - HibernateContextDAO.showUsageStatistics(379) |2017-06-07 10:49:20,467| Row Count : 2
  552. INFO - HibernateContextDAO.showUsageStatistics(372) |2017-06-07 10:49:20,467| QUERY: [CRITERIA] select this_.task_config_id as task_con1_85_0_, this_.uuid as uuid2_85_0_, this_.name as name3_85_0_, this_.description as descript4_85_0_, this_.schedulable_class as schedula5_85_0_, this_.repeat_interval as repeat_i6_85_0_, this_.start_time as start_ti7_85_0_, this_.start_time_pattern as start_ti8_85_0_, this_.last_execution_time as last_exe9_85_0_, this_.start_on_startup as start_o10_85_0_, this_.started as started11_85_0_, this_.created_by as created12_85_0_, this_.changed_by as changed13_85_0_, this_.date_created as date_cr14_85_0_, this_.date_changed as date_ch15_85_0_ from scheduler_task_config this_
  553. INFO - HibernateContextDAO.showUsageStatistics(374) |2017-06-07 10:49:20,467| Cache Hit Count : 0
  554. INFO - HibernateContextDAO.showUsageStatistics(375) |2017-06-07 10:49:20,467| Cache Miss Count: 0
  555. INFO - HibernateContextDAO.showUsageStatistics(376) |2017-06-07 10:49:20,467| Cache Put Count : 0
  556. INFO - HibernateContextDAO.showUsageStatistics(377) |2017-06-07 10:49:20,471| Execution Count : 2
  557. INFO - HibernateContextDAO.showUsageStatistics(378) |2017-06-07 10:49:20,471| Average time : 14
  558. INFO - HibernateContextDAO.showUsageStatistics(379) |2017-06-07 10:49:20,472| Row Count : 2
  559. INFO - HibernateContextDAO.showUsageStatistics(372) |2017-06-07 10:49:20,472| QUERY: select salt from users where user_id = ?
  560. INFO - HibernateContextDAO.showUsageStatistics(374) |2017-06-07 10:49:20,474| Cache Hit Count : 0
  561. INFO - HibernateContextDAO.showUsageStatistics(375) |2017-06-07 10:49:20,474| Cache Miss Count: 0
  562. INFO - HibernateContextDAO.showUsageStatistics(376) |2017-06-07 10:49:20,474| Cache Put Count : 0
  563. INFO - HibernateContextDAO.showUsageStatistics(377) |2017-06-07 10:49:20,475| Execution Count : 2
  564. INFO - HibernateContextDAO.showUsageStatistics(378) |2017-06-07 10:49:20,475| Average time : 0
  565. INFO - HibernateContextDAO.showUsageStatistics(379) |2017-06-07 10:49:20,475| Row Count : 2
  566. INFO - HibernateContextDAO.showUsageStatistics(372) |2017-06-07 10:49:20,475| QUERY: select password from users where user_id = ?
  567. INFO - HibernateContextDAO.showUsageStatistics(374) |2017-06-07 10:49:20,475| Cache Hit Count : 0
  568. INFO - HibernateContextDAO.showUsageStatistics(375) |2017-06-07 10:49:20,477| Cache Miss Count: 0
  569. INFO - HibernateContextDAO.showUsageStatistics(376) |2017-06-07 10:49:20,477| Cache Put Count : 0
  570. INFO - HibernateContextDAO.showUsageStatistics(377) |2017-06-07 10:49:20,477| Execution Count : 2
  571. INFO - HibernateContextDAO.showUsageStatistics(378) |2017-06-07 10:49:20,480| Average time : 0
  572. INFO - HibernateContextDAO.showUsageStatistics(379) |2017-06-07 10:49:20,480| Row Count : 2
  573. Jun 07, 2017 10:49:20 AM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads
  574. SEVERE: The web application [/openmrs] appears to have started a thread named [Thread-2] but has failed to stop it. This is very likely to create a memory leak.
  575. Jun 07, 2017 10:49:20 AM org.apache.catalina.loader.WebappClassLoader checkThreadLocalMapForLeaks
  576. SEVERE: The web application [/openmrs] created a ThreadLocal with key of type [org.apache.log4j.helpers.ThreadLocalMap] (value [org.apache.log4j.helpers.ThreadLocalMap@7e416850]) and a value of type [java.util.Hashtable] (value [{}]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.
  577. Jun 07, 2017 10:49:21 AM org.apache.coyote.AbstractProtocol stop
  578. INFO: Stopping ProtocolHandler ["http-bio-8080"]
  579. Jun 07, 2017 10:49:21 AM org.apache.coyote.AbstractProtocol destroy
  580. INFO: Destroying ProtocolHandler ["http-bio-8080"]
  581. Jun 07, 2017 10:49:22 AM org.apache.catalina.startup.ClassLoaderFactory validateFile
  582. WARNING: Problem with directory [/usr/share/tomcat7/common/classes], exists: [false], isDirectory: [false], canRead: [false]
  583. Jun 07, 2017 10:49:22 AM org.apache.catalina.startup.ClassLoaderFactory validateFile
  584. WARNING: Problem with directory [/usr/share/tomcat7/common], exists: [false], isDirectory: [false], canRead: [false]
  585. Jun 07, 2017 10:49:22 AM org.apache.catalina.startup.ClassLoaderFactory validateFile
  586. WARNING: Problem with directory [/usr/share/tomcat7/server/classes], exists: [false], isDirectory: [false], canRead: [false]
  587. Jun 07, 2017 10:49:22 AM org.apache.catalina.startup.ClassLoaderFactory validateFile
  588. WARNING: Problem with directory [/usr/share/tomcat7/server], exists: [false], isDirectory: [false], canRead: [false]
  589. Jun 07, 2017 10:49:22 AM org.apache.catalina.startup.ClassLoaderFactory validateFile
  590. WARNING: Problem with directory [/usr/share/tomcat7/shared/classes], exists: [false], isDirectory: [false], canRead: [false]
  591. Jun 07, 2017 10:49:22 AM org.apache.catalina.startup.ClassLoaderFactory validateFile
  592. WARNING: Problem with directory [/usr/share/tomcat7/shared], exists: [false], isDirectory: [false], canRead: [false]
  593. Jun 07, 2017 10:49:23 AM org.apache.coyote.AbstractProtocol init
  594. INFO: Initializing ProtocolHandler ["http-bio-8080"]
  595. Jun 07, 2017 10:49:23 AM org.apache.catalina.startup.Catalina load
  596. INFO: Initialization processed in 593 ms
  597. Jun 07, 2017 10:49:23 AM org.apache.catalina.core.StandardService startInternal
  598. INFO: Starting service Catalina
  599. Jun 07, 2017 10:49:23 AM org.apache.catalina.core.StandardEngine startInternal
  600. INFO: Starting Servlet Engine: Apache Tomcat/7.0.52 (Ubuntu)
  601. Jun 07, 2017 10:49:23 AM org.apache.catalina.startup.HostConfig deployDescriptor
  602. INFO: Deploying configuration descriptor /etc/tomcat7/Catalina/localhost/host-manager.xml
  603. Jun 07, 2017 10:49:23 AM org.apache.catalina.startup.HostConfig deployDescriptor
  604. INFO: Deploying configuration descriptor /etc/tomcat7/Catalina/localhost/examples.xml
  605. Jun 07, 2017 10:49:23 AM org.apache.catalina.startup.TaglibUriRule body
  606. INFO: TLD skipped. URI: http://java.sun.com/jstl/core_rt is already defined
  607. Jun 07, 2017 10:49:23 AM org.apache.catalina.startup.TaglibUriRule body
  608. INFO: TLD skipped. URI: http://java.sun.com/jstl/core is already defined
  609. Jun 07, 2017 10:49:23 AM org.apache.catalina.startup.TaglibUriRule body
  610. INFO: TLD skipped. URI: http://java.sun.com/jsp/jstl/core is already defined
  611. Jun 07, 2017 10:49:23 AM org.apache.catalina.startup.TaglibUriRule body
  612. INFO: TLD skipped. URI: http://java.sun.com/jstl/fmt_rt is already defined
  613. Jun 07, 2017 10:49:23 AM org.apache.catalina.startup.TaglibUriRule body
  614. INFO: TLD skipped. URI: http://java.sun.com/jstl/fmt is already defined
  615. Jun 07, 2017 10:49:23 AM org.apache.catalina.startup.TaglibUriRule body
  616. INFO: TLD skipped. URI: http://java.sun.com/jsp/jstl/fmt is already defined
  617. Jun 07, 2017 10:49:23 AM org.apache.catalina.startup.TaglibUriRule body
  618. INFO: TLD skipped. URI: http://java.sun.com/jsp/jstl/functions is already defined
  619. Jun 07, 2017 10:49:23 AM org.apache.catalina.startup.TaglibUriRule body
  620. INFO: TLD skipped. URI: http://jakarta.apache.org/taglibs/standard/permittedTaglibs is already defined
  621. Jun 07, 2017 10:49:23 AM org.apache.catalina.startup.TaglibUriRule body
  622. INFO: TLD skipped. URI: http://jakarta.apache.org/taglibs/standard/scriptfree is already defined
  623. Jun 07, 2017 10:49:23 AM org.apache.catalina.startup.TaglibUriRule body
  624. INFO: TLD skipped. URI: http://java.sun.com/jstl/sql_rt is already defined
  625. Jun 07, 2017 10:49:23 AM org.apache.catalina.startup.TaglibUriRule body
  626. INFO: TLD skipped. URI: http://java.sun.com/jstl/sql is already defined
  627. Jun 07, 2017 10:49:23 AM org.apache.catalina.startup.TaglibUriRule body
  628. INFO: TLD skipped. URI: http://java.sun.com/jsp/jstl/sql is already defined
  629. Jun 07, 2017 10:49:23 AM org.apache.catalina.startup.TaglibUriRule body
  630. INFO: TLD skipped. URI: http://java.sun.com/jstl/xml_rt is already defined
  631. Jun 07, 2017 10:49:23 AM org.apache.catalina.startup.TaglibUriRule body
  632. INFO: TLD skipped. URI: http://java.sun.com/jstl/xml is already defined
  633. Jun 07, 2017 10:49:23 AM org.apache.catalina.startup.TaglibUriRule body
  634. INFO: TLD skipped. URI: http://java.sun.com/jsp/jstl/xml is already defined
  635. Jun 07, 2017 10:49:23 AM org.apache.catalina.startup.HostConfig deployDescriptor
  636. INFO: Deploying configuration descriptor /etc/tomcat7/Catalina/localhost/docs.xml
  637. Jun 07, 2017 10:49:23 AM org.apache.catalina.startup.HostConfig deployDescriptor
  638. INFO: Deploying configuration descriptor /etc/tomcat7/Catalina/localhost/manager.xml
  639. Jun 07, 2017 10:49:23 AM org.apache.catalina.startup.HostConfig deployWAR
  640. INFO: Deploying web application archive /var/lib/tomcat7/webapps/openmrs.war
  641. Jun 07, 2017 10:49:31 AM org.apache.catalina.startup.TaglibUriRule body
  642. INFO: TLD skipped. URI: http://www.springframework.org/tags/form is already defined
  643. Jun 07, 2017 10:49:31 AM org.apache.catalina.startup.TaglibUriRule body
  644. INFO: TLD skipped. URI: http://java.sun.com/jsp/jstl/functions is already defined
  645. Jun 07, 2017 10:49:31 AM org.apache.catalina.startup.TaglibUriRule body
  646. INFO: TLD skipped. URI: http://www.springframework.org/tags is already defined
  647. Jun 07, 2017 10:49:31 AM org.apache.catalina.startup.TaglibUriRule body
  648. INFO: TLD skipped. URI: http://jakarta.apache.org/taglibs/response-1.0 is already defined
  649. Jun 07, 2017 10:49:31 AM org.apache.catalina.startup.TaglibUriRule body
  650. INFO: TLD skipped. URI: http://java.sun.com/jstl/core_rt is already defined
  651. Jun 07, 2017 10:49:31 AM org.apache.catalina.startup.TaglibUriRule body
  652. INFO: TLD skipped. URI: http://jakarta.apache.org/taglibs/page-1.0 is already defined
  653. Jun 07, 2017 10:49:31 AM org.apache.catalina.startup.TaglibUriRule body
  654. INFO: TLD skipped. URI: http://jakarta.apache.org/taglibs/request-1.0 is already defined
  655. Jun 07, 2017 10:49:31 AM org.apache.catalina.startup.TaglibUriRule body
  656. INFO: TLD skipped. URI: http://jakarta.apache.org/taglibs/request-1.0 is already defined
  657. Jun 07, 2017 10:49:31 AM org.apache.catalina.startup.TaglibUriRule body
  658. INFO: TLD skipped. URI: http://www.springframework.org/tags is already defined
  659. Jun 07, 2017 10:49:31 AM org.apache.catalina.startup.TaglibUriRule body
  660. INFO: TLD skipped. URI: http://www.springframework.org/tags/form is already defined
  661. Jun 07, 2017 10:49:31 AM org.apache.catalina.startup.TaglibUriRule body
  662. INFO: TLD skipped. URI: http://jakarta.apache.org/taglibs/response-1.0 is already defined
  663. Jun 07, 2017 10:49:31 AM org.apache.catalina.startup.TaglibUriRule body
  664. INFO: TLD skipped. URI: http://java.sun.com/jstl/core_rt is already defined
  665. Jun 07, 2017 10:49:31 AM org.apache.catalina.startup.TaglibUriRule body
  666. INFO: TLD skipped. URI: http://java.sun.com/jsp/jstl/functions is already defined
  667. Jun 07, 2017 10:49:31 AM org.apache.catalina.startup.TaglibUriRule body
  668. INFO: TLD skipped. URI: http://jakarta.apache.org/taglibs/page-1.0 is already defined
  669. WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2113) |2017-06-07 10:49:32,050| Unable to find a runtime properties file at /var/lib/tomcat7/openmrs-runtime.properties
  670. WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2113) |2017-06-07 10:49:32,078| Unable to find a runtime properties file at /var/lib/tomcat7/openmrs-runtime.properties
  671. INFO - Listener.contextInitialized(174) |2017-06-07 10:49:32,078| Using runtime properties file: /usr/share/tomcat7/.OpenMRS/openmrs-runtime.properties
  672. INFO 6/7/17 10:49 AM:liquibase: Reading from `liquibasechangelog`
  673. WARNING 6/7/17 10:49 AM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  674. WARNING 6/7/17 10:49 AM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  675. WARNING 6/7/17 10:49 AM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  676. WARN - SimpleUrlHandlerMapping.registerHandlers(115) |2017-06-07 10:49:57,178| Neither 'urlMap' nor 'mappings' set on SimpleUrlHandlerMapping
  677. WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2113) |2017-06-07 10:49:57,436| Unable to find a runtime properties file at /var/lib/tomcat7/openmrs-runtime.properties
  678. INFO 6/7/17 10:49 AM:liquibase: Reading from `liquibasechangelog`
  679. WARNING 6/7/17 10:49 AM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  680. WARNING 6/7/17 10:49 AM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  681. WARNING 6/7/17 10:49 AM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  682. INFO - LoggingAdvice.invoke(115) |2017-06-07 10:50:01,400| In method AdministrationService.saveGlobalProperty. Arguments: GlobalProperty=property: legacyui.started value: true,
  683. INFO - LoggingAdvice.invoke(155) |2017-06-07 10:50:01,450| Exiting method saveGlobalProperty
  684. INFO - LoggingAdvice.invoke(115) |2017-06-07 10:50:01,464| In method AdministrationService.saveGlobalProperty. Arguments: GlobalProperty=property: legacyui.mandatory value: false,
  685. INFO - LoggingAdvice.invoke(155) |2017-06-07 10:50:01,475| Exiting method saveGlobalProperty
  686. INFO - LoggingAdvice.invoke(115) |2017-06-07 10:50:01,745| In method AdministrationService.saveGlobalProperty. Arguments: GlobalProperty=property: webservices.rest.started value: true,
  687. INFO - LoggingAdvice.invoke(155) |2017-06-07 10:50:01,765| Exiting method saveGlobalProperty
  688. INFO - LoggingAdvice.invoke(115) |2017-06-07 10:50:01,770| In method AdministrationService.saveGlobalProperty. Arguments: GlobalProperty=property: webservices.rest.mandatory value: false,
  689. INFO - LoggingAdvice.invoke(155) |2017-06-07 10:50:01,773| Exiting method saveGlobalProperty
  690. INFO - LoggingAdvice.invoke(115) |2017-06-07 10:50:02,225| In method AdministrationService.saveGlobalProperty. Arguments: GlobalProperty=property: owa.started value: true,
  691. INFO - LoggingAdvice.invoke(155) |2017-06-07 10:50:02,234| Exiting method saveGlobalProperty
  692. INFO - LoggingAdvice.invoke(115) |2017-06-07 10:50:02,238| In method AdministrationService.saveGlobalProperty. Arguments: GlobalProperty=property: owa.mandatory value: false,
  693. INFO - LoggingAdvice.invoke(155) |2017-06-07 10:50:02,247| Exiting method saveGlobalProperty
  694. INFO 6/7/17 10:50 AM:liquibase: liquibase.xml is using schema version 1.9 rather than version 2.0
  695. INFO 6/7/17 10:50 AM:liquibase: Reading from `liquibasechangelog`
  696. INFO 6/7/17 10:50 AM:liquibase: Successfully acquired change log lock
  697. INFO 6/7/17 10:50 AM:liquibase: liquibase.xml is using schema version 1.9 rather than version 2.0
  698. INFO 6/7/17 10:50 AM:liquibase: Successfully released change log lock
  699. INFO - LoggingAdvice.invoke(115) |2017-06-07 10:50:03,644| In method AdministrationService.saveGlobalProperty. Arguments: GlobalProperty=property: fhir.started value: true,
  700. INFO - LoggingAdvice.invoke(155) |2017-06-07 10:50:03,652| Exiting method saveGlobalProperty
  701. INFO - LoggingAdvice.invoke(115) |2017-06-07 10:50:03,665| In method AdministrationService.saveGlobalProperty. Arguments: GlobalProperty=property: fhir.mandatory value: false,
  702. INFO - LoggingAdvice.invoke(155) |2017-06-07 10:50:03,679| Exiting method saveGlobalProperty
  703. INFO - LoggingAdvice.invoke(115) |2017-06-07 10:50:04,454| In method SchedulerService.saveToMemento. Arguments:
  704. INFO - LoggingAdvice.invoke(155) |2017-06-07 10:50:04,490| Exiting method saveToMemento
  705. INFO - ServiceContext.startRefreshingContext(816) |2017-06-07 10:50:04,630| Refreshing Context
  706. WARN - SimpleUrlHandlerMapping.registerHandlers(115) |2017-06-07 10:50:17,394| Neither 'urlMap' nor 'mappings' set on SimpleUrlHandlerMapping
  707. WARN - SimpleUrlHandlerMapping.registerHandlers(115) |2017-06-07 10:50:22,050| Neither 'urlMap' nor 'mappings' set on SimpleUrlHandlerMapping
  708. INFO - ServiceContext.doneRefreshingContext(827) |2017-06-07 10:50:22,057| Done refreshing Context
  709. WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2113) |2017-06-07 10:50:33,843| Unable to find a runtime properties file at /var/lib/tomcat7/openmrs-runtime.properties
  710. Jun 07, 2017 10:50:33 AM org.apache.catalina.session.StandardManager doLoad
  711. SEVERE: ClassNotFoundException while loading persisted sessions: java.lang.ClassNotFoundException: org.openmrs.api.context.UserContext
  712. java.lang.ClassNotFoundException: org.openmrs.api.context.UserContext
  713. at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
  714. at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
  715. at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
  716. at java.lang.Class.forName0(Native Method)
  717. at java.lang.Class.forName(Class.java:348)
  718. at java.io.ObjectInputStream.resolveClass(ObjectInputStream.java:628)
  719. at java.io.ObjectInputStream.readNonProxyDesc(ObjectInputStream.java:1620)
  720. at java.io.ObjectInputStream.readClassDesc(ObjectInputStream.java:1521)
  721. at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1781)
  722. at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1353)
  723. at java.io.ObjectInputStream.readObject(ObjectInputStream.java:373)
  724. at org.apache.catalina.session.StandardSession.readObject(StandardSession.java:1595)
  725. at org.apache.catalina.session.StandardSession.readObjectData(StandardSession.java:1060)
  726. at org.apache.catalina.session.StandardManager.doLoad(StandardManager.java:285)
  727. at org.apache.catalina.session.StandardManager.load(StandardManager.java:202)
  728. at org.apache.catalina.session.StandardManager.startInternal(StandardManager.java:492)
  729. at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
  730. at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5513)
  731. at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
  732. at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:901)
  733. at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:877)
  734. at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:632)
  735. at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:1073)
  736. at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1857)
  737. at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
  738. at java.util.concurrent.FutureTask.run(FutureTask.java:266)
  739. at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
  740. at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
  741. at java.lang.Thread.run(Thread.java:745)
  742.  
  743. Jun 07, 2017 10:50:33 AM org.apache.catalina.session.StandardManager startInternal
  744. SEVERE: Exception loading sessions from persistent storage
  745. java.lang.ClassNotFoundException: org.openmrs.api.context.UserContext
  746. at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
  747. at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
  748. at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
  749. at java.lang.Class.forName0(Native Method)
  750. at java.lang.Class.forName(Class.java:348)
  751. at java.io.ObjectInputStream.resolveClass(ObjectInputStream.java:628)
  752. at java.io.ObjectInputStream.readNonProxyDesc(ObjectInputStream.java:1620)
  753. at java.io.ObjectInputStream.readClassDesc(ObjectInputStream.java:1521)
  754. at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1781)
  755. at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1353)
  756. at java.io.ObjectInputStream.readObject(ObjectInputStream.java:373)
  757. at org.apache.catalina.session.StandardSession.readObject(StandardSession.java:1595)
  758. at org.apache.catalina.session.StandardSession.readObjectData(StandardSession.java:1060)
  759. at org.apache.catalina.session.StandardManager.doLoad(StandardManager.java:285)
  760. at org.apache.catalina.session.StandardManager.load(StandardManager.java:202)
  761. at org.apache.catalina.session.StandardManager.startInternal(StandardManager.java:492)
  762. at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
  763. at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5513)
  764. at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
  765. at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:901)
  766. at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:877)
  767. at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:632)
  768. at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:1073)
  769. at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1857)
  770. at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
  771. at java.util.concurrent.FutureTask.run(FutureTask.java:266)
  772. at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
  773. at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
  774. at java.lang.Thread.run(Thread.java:745)
  775.  
  776. WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2113) |2017-06-07 10:50:34,294| Unable to find a runtime properties file at /var/lib/tomcat7/openmrs-runtime.properties
  777. Jun 07, 2017 10:50:34 AM org.apache.catalina.startup.HostConfig deployDirectory
  778. INFO: Deploying web application directory /var/lib/tomcat7/webapps/ROOT
  779. Jun 07, 2017 10:50:36 AM org.apache.coyote.AbstractProtocol start
  780. INFO: Starting ProtocolHandler ["http-bio-8080"]
  781. Jun 07, 2017 10:50:36 AM org.apache.catalina.startup.Catalina start
  782. INFO: Server startup in 73005 ms
  783. Jun 07, 2017 10:50:37 AM org.apache.jasper.compiler.TldLocationsCache tldScanJar
  784. INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time.
  785. INFO - HibernateContextDAO.authenticate(203) |2017-06-07 10:51:06,334| Failed login attempt (login=admin) - Invalid username and/or password: admin
  786. Jun 07, 2017 11:17:42 AM org.apache.coyote.AbstractProtocol pause
  787. INFO: Pausing ProtocolHandler ["http-bio-8080"]
  788. Jun 07, 2017 11:17:42 AM org.apache.catalina.core.StandardService stopInternal
  789. INFO: Stopping service Catalina
  790. INFO - HibernateContextDAO.showUsageStatistics(372) |2017-06-07 11:17:42,838| QUERY: from User u where (u.username = ? or u.systemId = ? or u.systemId = ?) and u.retired = '0'
  791. INFO - HibernateContextDAO.showUsageStatistics(374) |2017-06-07 11:17:42,839| Cache Hit Count : 0
  792. INFO - HibernateContextDAO.showUsageStatistics(375) |2017-06-07 11:17:42,839| Cache Miss Count: 0
  793. INFO - HibernateContextDAO.showUsageStatistics(376) |2017-06-07 11:17:42,839| Cache Put Count : 0
  794. INFO - HibernateContextDAO.showUsageStatistics(377) |2017-06-07 11:17:42,840| Execution Count : 2
  795. INFO - HibernateContextDAO.showUsageStatistics(378) |2017-06-07 11:17:42,840| Average time : 30
  796. INFO - HibernateContextDAO.showUsageStatistics(379) |2017-06-07 11:17:42,840| Row Count : 2
  797. INFO - HibernateContextDAO.showUsageStatistics(372) |2017-06-07 11:17:42,840| QUERY: [CRITERIA] select this_.task_config_id as task_con1_85_0_, this_.uuid as uuid2_85_0_, this_.name as name3_85_0_, this_.description as descript4_85_0_, this_.schedulable_class as schedula5_85_0_, this_.repeat_interval as repeat_i6_85_0_, this_.start_time as start_ti7_85_0_, this_.start_time_pattern as start_ti8_85_0_, this_.last_execution_time as last_exe9_85_0_, this_.start_on_startup as start_o10_85_0_, this_.started as started11_85_0_, this_.created_by as created12_85_0_, this_.changed_by as changed13_85_0_, this_.date_created as date_cr14_85_0_, this_.date_changed as date_ch15_85_0_ from scheduler_task_config this_
  798. INFO - HibernateContextDAO.showUsageStatistics(374) |2017-06-07 11:17:42,840| Cache Hit Count : 0
  799. INFO - HibernateContextDAO.showUsageStatistics(375) |2017-06-07 11:17:42,841| Cache Miss Count: 0
  800. INFO - HibernateContextDAO.showUsageStatistics(376) |2017-06-07 11:17:42,841| Cache Put Count : 0
  801. INFO - HibernateContextDAO.showUsageStatistics(377) |2017-06-07 11:17:42,841| Execution Count : 2
  802. INFO - HibernateContextDAO.showUsageStatistics(378) |2017-06-07 11:17:42,841| Average time : 23
  803. INFO - HibernateContextDAO.showUsageStatistics(379) |2017-06-07 11:17:42,841| Row Count : 2
  804. INFO - HibernateContextDAO.showUsageStatistics(372) |2017-06-07 11:17:42,841| QUERY: select salt from users where user_id = ?
  805. INFO - HibernateContextDAO.showUsageStatistics(374) |2017-06-07 11:17:42,842| Cache Hit Count : 0
  806. INFO - HibernateContextDAO.showUsageStatistics(375) |2017-06-07 11:17:42,842| Cache Miss Count: 0
  807. INFO - HibernateContextDAO.showUsageStatistics(376) |2017-06-07 11:17:42,846| Cache Put Count : 0
  808. INFO - HibernateContextDAO.showUsageStatistics(377) |2017-06-07 11:17:42,846| Execution Count : 2
  809. INFO - HibernateContextDAO.showUsageStatistics(378) |2017-06-07 11:17:42,846| Average time : 1
  810. INFO - HibernateContextDAO.showUsageStatistics(379) |2017-06-07 11:17:42,846| Row Count : 2
  811. INFO - HibernateContextDAO.showUsageStatistics(372) |2017-06-07 11:17:42,847| QUERY: select password from users where user_id = ?
  812. INFO - HibernateContextDAO.showUsageStatistics(374) |2017-06-07 11:17:42,847| Cache Hit Count : 0
  813. INFO - HibernateContextDAO.showUsageStatistics(375) |2017-06-07 11:17:42,847| Cache Miss Count: 0
  814. INFO - HibernateContextDAO.showUsageStatistics(376) |2017-06-07 11:17:42,847| Cache Put Count : 0
  815. INFO - HibernateContextDAO.showUsageStatistics(377) |2017-06-07 11:17:42,847| Execution Count : 2
  816. INFO - HibernateContextDAO.showUsageStatistics(378) |2017-06-07 11:17:42,848| Average time : 3
  817. INFO - HibernateContextDAO.showUsageStatistics(379) |2017-06-07 11:17:42,848| Row Count : 2
  818. INFO - HibernateContextDAO.showUsageStatistics(372) |2017-06-07 11:17:42,848| QUERY: [CRITERIA] select this_.alert_id as alert_id1_51_1_, this_.text as text2_51_1_, this_.satisfied_by_any as satisfie3_51_1_, this_.alert_read as alert_re4_51_1_, this_.date_to_expire as date_to_5_51_1_, this_.creator as creator6_51_1_, this_.date_created as date_cre7_51_1_, this_.changed_by as changed_8_51_1_, this_.date_changed as date_cha9_51_1_, this_.uuid as uuid10_51_1_, recipient1_.alert_id as alert_id1_52_0_, recipient1_.user_id as user_id2_52_0_, recipient1_.alert_read as alert_re3_52_0_, recipient1_.date_changed as date_cha4_52_0_, recipient1_.uuid as uuid5_52_0_ from notification_alert this_ inner join notification_alert_recipient recipient1_ on this_.alert_id=recipient1_.alert_id where recipient1_.user_id=? and (this_.date_to_expire is null or this_.date_to_expire>?) and this_.alert_read=? and recipient1_.alert_read=? order by this_.date_changed desc
  819. INFO - HibernateContextDAO.showUsageStatistics(374) |2017-06-07 11:17:42,848| Cache Hit Count : 0
  820. INFO - HibernateContextDAO.showUsageStatistics(375) |2017-06-07 11:17:42,848| Cache Miss Count: 0
  821. INFO - HibernateContextDAO.showUsageStatistics(376) |2017-06-07 11:17:42,849| Cache Put Count : 0
  822. INFO - HibernateContextDAO.showUsageStatistics(377) |2017-06-07 11:17:42,849| Execution Count : 4
  823. INFO - HibernateContextDAO.showUsageStatistics(378) |2017-06-07 11:17:42,849| Average time : 3
  824. INFO - HibernateContextDAO.showUsageStatistics(379) |2017-06-07 11:17:42,849| Row Count : 0
  825. Jun 07, 2017 11:17:42 AM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads
  826. SEVERE: The web application [/openmrs] appears to have started a thread named [Thread-2] but has failed to stop it. This is very likely to create a memory leak.
  827. Jun 07, 2017 11:17:42 AM org.apache.catalina.loader.WebappClassLoader checkThreadLocalMapForLeaks
  828. SEVERE: The web application [/openmrs] created a ThreadLocal with key of type [org.apache.log4j.helpers.ThreadLocalMap] (value [org.apache.log4j.helpers.ThreadLocalMap@289a3392]) and a value of type [java.util.Hashtable] (value [{}]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.
  829. Jun 07, 2017 11:17:43 AM org.apache.coyote.AbstractProtocol stop
  830. INFO: Stopping ProtocolHandler ["http-bio-8080"]
  831. Jun 07, 2017 11:17:43 AM org.apache.coyote.AbstractProtocol destroy
  832. INFO: Destroying ProtocolHandler ["http-bio-8080"]
  833. Jun 07, 2017 11:17:44 AM org.apache.catalina.startup.ClassLoaderFactory validateFile
  834. WARNING: Problem with directory [/usr/share/tomcat7/common/classes], exists: [false], isDirectory: [false], canRead: [false]
  835. Jun 07, 2017 11:17:44 AM org.apache.catalina.startup.ClassLoaderFactory validateFile
  836. WARNING: Problem with directory [/usr/share/tomcat7/common], exists: [false], isDirectory: [false], canRead: [false]
  837. Jun 07, 2017 11:17:44 AM org.apache.catalina.startup.ClassLoaderFactory validateFile
  838. WARNING: Problem with directory [/usr/share/tomcat7/server/classes], exists: [false], isDirectory: [false], canRead: [false]
  839. Jun 07, 2017 11:17:44 AM org.apache.catalina.startup.ClassLoaderFactory validateFile
  840. WARNING: Problem with directory [/usr/share/tomcat7/server], exists: [false], isDirectory: [false], canRead: [false]
  841. Jun 07, 2017 11:17:44 AM org.apache.catalina.startup.ClassLoaderFactory validateFile
  842. WARNING: Problem with directory [/usr/share/tomcat7/shared/classes], exists: [false], isDirectory: [false], canRead: [false]
  843. Jun 07, 2017 11:17:44 AM org.apache.catalina.startup.ClassLoaderFactory validateFile
  844. WARNING: Problem with directory [/usr/share/tomcat7/shared], exists: [false], isDirectory: [false], canRead: [false]
  845. Jun 07, 2017 11:17:45 AM org.apache.coyote.AbstractProtocol init
  846. INFO: Initializing ProtocolHandler ["http-bio-8080"]
  847. Jun 07, 2017 11:17:45 AM org.apache.catalina.startup.Catalina load
  848. INFO: Initialization processed in 612 ms
  849. Jun 07, 2017 11:17:45 AM org.apache.catalina.core.StandardService startInternal
  850. INFO: Starting service Catalina
  851. Jun 07, 2017 11:17:45 AM org.apache.catalina.core.StandardEngine startInternal
  852. INFO: Starting Servlet Engine: Apache Tomcat/7.0.52 (Ubuntu)
  853. Jun 07, 2017 11:17:45 AM org.apache.catalina.startup.HostConfig deployDescriptor
  854. INFO: Deploying configuration descriptor /etc/tomcat7/Catalina/localhost/host-manager.xml
  855. Jun 07, 2017 11:17:45 AM org.apache.catalina.startup.HostConfig deployDescriptor
  856. INFO: Deploying configuration descriptor /etc/tomcat7/Catalina/localhost/examples.xml
  857. Jun 07, 2017 11:17:45 AM org.apache.catalina.startup.TaglibUriRule body
  858. INFO: TLD skipped. URI: http://java.sun.com/jstl/core_rt is already defined
  859. Jun 07, 2017 11:17:45 AM org.apache.catalina.startup.TaglibUriRule body
  860. INFO: TLD skipped. URI: http://java.sun.com/jstl/core is already defined
  861. Jun 07, 2017 11:17:45 AM org.apache.catalina.startup.TaglibUriRule body
  862. INFO: TLD skipped. URI: http://java.sun.com/jsp/jstl/core is already defined
  863. Jun 07, 2017 11:17:45 AM org.apache.catalina.startup.TaglibUriRule body
  864. INFO: TLD skipped. URI: http://java.sun.com/jstl/fmt_rt is already defined
  865. Jun 07, 2017 11:17:45 AM org.apache.catalina.startup.TaglibUriRule body
  866. INFO: TLD skipped. URI: http://java.sun.com/jstl/fmt is already defined
  867. Jun 07, 2017 11:17:45 AM org.apache.catalina.startup.TaglibUriRule body
  868. INFO: TLD skipped. URI: http://java.sun.com/jsp/jstl/fmt is already defined
  869. Jun 07, 2017 11:17:45 AM org.apache.catalina.startup.TaglibUriRule body
  870. INFO: TLD skipped. URI: http://java.sun.com/jsp/jstl/functions is already defined
  871. Jun 07, 2017 11:17:45 AM org.apache.catalina.startup.TaglibUriRule body
  872. INFO: TLD skipped. URI: http://jakarta.apache.org/taglibs/standard/permittedTaglibs is already defined
  873. Jun 07, 2017 11:17:45 AM org.apache.catalina.startup.TaglibUriRule body
  874. INFO: TLD skipped. URI: http://jakarta.apache.org/taglibs/standard/scriptfree is already defined
  875. Jun 07, 2017 11:17:45 AM org.apache.catalina.startup.TaglibUriRule body
  876. INFO: TLD skipped. URI: http://java.sun.com/jstl/sql_rt is already defined
  877. Jun 07, 2017 11:17:45 AM org.apache.catalina.startup.TaglibUriRule body
  878. INFO: TLD skipped. URI: http://java.sun.com/jstl/sql is already defined
  879. Jun 07, 2017 11:17:45 AM org.apache.catalina.startup.TaglibUriRule body
  880. INFO: TLD skipped. URI: http://java.sun.com/jsp/jstl/sql is already defined
  881. Jun 07, 2017 11:17:45 AM org.apache.catalina.startup.TaglibUriRule body
  882. INFO: TLD skipped. URI: http://java.sun.com/jstl/xml_rt is already defined
  883. Jun 07, 2017 11:17:45 AM org.apache.catalina.startup.TaglibUriRule body
  884. INFO: TLD skipped. URI: http://java.sun.com/jstl/xml is already defined
  885. Jun 07, 2017 11:17:45 AM org.apache.catalina.startup.TaglibUriRule body
  886. INFO: TLD skipped. URI: http://java.sun.com/jsp/jstl/xml is already defined
  887. Jun 07, 2017 11:17:45 AM org.apache.catalina.startup.HostConfig deployDescriptor
  888. INFO: Deploying configuration descriptor /etc/tomcat7/Catalina/localhost/docs.xml
  889. Jun 07, 2017 11:17:45 AM org.apache.catalina.startup.HostConfig deployDescriptor
  890. INFO: Deploying configuration descriptor /etc/tomcat7/Catalina/localhost/manager.xml
  891. Jun 07, 2017 11:17:45 AM org.apache.catalina.startup.HostConfig deployWAR
  892. INFO: Deploying web application archive /var/lib/tomcat7/webapps/openmrs.war
  893. Jun 07, 2017 11:17:53 AM org.apache.catalina.startup.TaglibUriRule body
  894. INFO: TLD skipped. URI: http://www.springframework.org/tags/form is already defined
  895. Jun 07, 2017 11:17:53 AM org.apache.catalina.startup.TaglibUriRule body
  896. INFO: TLD skipped. URI: http://java.sun.com/jsp/jstl/functions is already defined
  897. Jun 07, 2017 11:17:53 AM org.apache.catalina.startup.TaglibUriRule body
  898. INFO: TLD skipped. URI: http://www.springframework.org/tags is already defined
  899. Jun 07, 2017 11:17:53 AM org.apache.catalina.startup.TaglibUriRule body
  900. INFO: TLD skipped. URI: http://jakarta.apache.org/taglibs/response-1.0 is already defined
  901. Jun 07, 2017 11:17:53 AM org.apache.catalina.startup.TaglibUriRule body
  902. INFO: TLD skipped. URI: http://java.sun.com/jstl/core_rt is already defined
  903. Jun 07, 2017 11:17:53 AM org.apache.catalina.startup.TaglibUriRule body
  904. INFO: TLD skipped. URI: http://jakarta.apache.org/taglibs/page-1.0 is already defined
  905. Jun 07, 2017 11:17:53 AM org.apache.catalina.startup.TaglibUriRule body
  906. INFO: TLD skipped. URI: http://jakarta.apache.org/taglibs/request-1.0 is already defined
  907. Jun 07, 2017 11:17:53 AM org.apache.catalina.startup.TaglibUriRule body
  908. INFO: TLD skipped. URI: http://jakarta.apache.org/taglibs/request-1.0 is already defined
  909. Jun 07, 2017 11:17:53 AM org.apache.catalina.startup.TaglibUriRule body
  910. INFO: TLD skipped. URI: http://www.springframework.org/tags is already defined
  911. Jun 07, 2017 11:17:53 AM org.apache.catalina.startup.TaglibUriRule body
  912. INFO: TLD skipped. URI: http://www.springframework.org/tags/form is already defined
  913. Jun 07, 2017 11:17:53 AM org.apache.catalina.startup.TaglibUriRule body
  914. INFO: TLD skipped. URI: http://jakarta.apache.org/taglibs/response-1.0 is already defined
  915. Jun 07, 2017 11:17:53 AM org.apache.catalina.startup.TaglibUriRule body
  916. INFO: TLD skipped. URI: http://java.sun.com/jstl/core_rt is already defined
  917. Jun 07, 2017 11:17:53 AM org.apache.catalina.startup.TaglibUriRule body
  918. INFO: TLD skipped. URI: http://java.sun.com/jsp/jstl/functions is already defined
  919. Jun 07, 2017 11:17:53 AM org.apache.catalina.startup.TaglibUriRule body
  920. INFO: TLD skipped. URI: http://jakarta.apache.org/taglibs/page-1.0 is already defined
  921. WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2113) |2017-06-07 11:17:54,122| Unable to find a runtime properties file at /var/lib/tomcat7/openmrs-runtime.properties
  922. WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2113) |2017-06-07 11:17:54,135| Unable to find a runtime properties file at /var/lib/tomcat7/openmrs-runtime.properties
  923. INFO - Listener.contextInitialized(174) |2017-06-07 11:17:54,137| Using runtime properties file: /usr/share/tomcat7/.OpenMRS/openmrs-runtime.properties
  924. INFO 6/7/17 11:17 AM:liquibase: Reading from `liquibasechangelog`
  925. WARNING 6/7/17 11:17 AM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  926. WARNING 6/7/17 11:17 AM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  927. WARNING 6/7/17 11:17 AM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  928. Jun 07, 2017 11:18:00 AM org.apache.catalina.session.StandardManager doLoad
  929. SEVERE: ClassNotFoundException while loading persisted sessions: java.lang.ClassNotFoundException: org.openmrs.api.context.UserContext
  930. java.lang.ClassNotFoundException: org.openmrs.api.context.UserContext
  931. at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
  932. at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
  933. at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
  934. at java.lang.Class.forName0(Native Method)
  935. at java.lang.Class.forName(Class.java:348)
  936. at java.io.ObjectInputStream.resolveClass(ObjectInputStream.java:628)
  937. at java.io.ObjectInputStream.readNonProxyDesc(ObjectInputStream.java:1620)
  938. at java.io.ObjectInputStream.readClassDesc(ObjectInputStream.java:1521)
  939. at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1781)
  940. at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1353)
  941. at java.io.ObjectInputStream.readObject(ObjectInputStream.java:373)
  942. at org.apache.catalina.session.StandardSession.readObject(StandardSession.java:1595)
  943. at org.apache.catalina.session.StandardSession.readObjectData(StandardSession.java:1060)
  944. at org.apache.catalina.session.StandardManager.doLoad(StandardManager.java:285)
  945. at org.apache.catalina.session.StandardManager.load(StandardManager.java:202)
  946. at org.apache.catalina.session.StandardManager.startInternal(StandardManager.java:492)
  947. at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
  948. at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5513)
  949. at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
  950. at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:901)
  951. at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:877)
  952. at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:632)
  953. at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:1073)
  954. at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1857)
  955. at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
  956. at java.util.concurrent.FutureTask.run(FutureTask.java:266)
  957. at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
  958. at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
  959. at java.lang.Thread.run(Thread.java:745)
  960.  
  961. Jun 07, 2017 11:18:00 AM org.apache.catalina.session.StandardManager startInternal
  962. SEVERE: Exception loading sessions from persistent storage
  963. java.lang.ClassNotFoundException: org.openmrs.api.context.UserContext
  964. at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
  965. at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
  966. at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
  967. at java.lang.Class.forName0(Native Method)
  968. at java.lang.Class.forName(Class.java:348)
  969. at java.io.ObjectInputStream.resolveClass(ObjectInputStream.java:628)
  970. at java.io.ObjectInputStream.readNonProxyDesc(ObjectInputStream.java:1620)
  971. at java.io.ObjectInputStream.readClassDesc(ObjectInputStream.java:1521)
  972. at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1781)
  973. at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1353)
  974. at java.io.ObjectInputStream.readObject(ObjectInputStream.java:373)
  975. at org.apache.catalina.session.StandardSession.readObject(StandardSession.java:1595)
  976. at org.apache.catalina.session.StandardSession.readObjectData(StandardSession.java:1060)
  977. at org.apache.catalina.session.StandardManager.doLoad(StandardManager.java:285)
  978. at org.apache.catalina.session.StandardManager.load(StandardManager.java:202)
  979. at org.apache.catalina.session.StandardManager.startInternal(StandardManager.java:492)
  980. at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
  981. at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5513)
  982. at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
  983. at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:901)
  984. at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:877)
  985. at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:632)
  986. at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:1073)
  987. at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1857)
  988. at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
  989. at java.util.concurrent.FutureTask.run(FutureTask.java:266)
  990. at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
  991. at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
  992. at java.lang.Thread.run(Thread.java:745)
  993.  
  994. INFO 6/7/17 11:18 AM:liquibase: Reading from `liquibasechangelog`
  995. WARNING 6/7/17 11:18 AM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  996. WARNING 6/7/17 11:18 AM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  997. WARNING 6/7/17 11:18 AM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  998. WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2113) |2017-06-07 11:18:03,357| Unable to find a runtime properties file at /var/lib/tomcat7/openmrs-runtime.properties
  999. Jun 07, 2017 11:18:03 AM org.apache.catalina.startup.HostConfig deployDirectory
  1000. INFO: Deploying web application directory /var/lib/tomcat7/webapps/ROOT
  1001. Jun 07, 2017 11:18:03 AM org.apache.coyote.AbstractProtocol start
  1002. INFO: Starting ProtocolHandler ["http-bio-8080"]
  1003. Jun 07, 2017 11:18:04 AM org.apache.catalina.startup.Catalina start
  1004. INFO: Server startup in 19001 ms
  1005. Jun 07, 2017 11:26:10 AM org.apache.coyote.AbstractProtocol pause
  1006. INFO: Pausing ProtocolHandler ["http-bio-8080"]
  1007. Jun 07, 2017 11:26:10 AM org.apache.catalina.core.StandardService stopInternal
  1008. INFO: Stopping service Catalina
  1009. ERROR - Context.getServiceContext(250) |2017-06-07 11:26:10,455| serviceContext is null. Creating new ServiceContext()
  1010. Listener.contextDestroyed: Error while shutting down openmrs:
  1011. ERROR - Listener.contextDestroyed(568) |2017-06-07 11:26:10,462| org.openmrs.api.APIException: Service not found: interface org.openmrs.messagesource.MessageSourceService
  1012. Jun 07, 2017 11:26:10 AM org.apache.catalina.loader.WebappClassLoader clearReferencesJdbc
  1013. SEVERE: The web application [/openmrs] registered the JDBC driver [com.mysql.jdbc.Driver] but failed to unregister it when the web application was stopped. To prevent a memory leak, the JDBC Driver has been forcibly unregistered.
  1014. Jun 07, 2017 11:26:10 AM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads
  1015. SEVERE: The web application [/openmrs] appears to have started a thread named [Thread-2] but has failed to stop it. This is very likely to create a memory leak.
  1016. Jun 07, 2017 11:26:10 AM org.apache.coyote.AbstractProtocol stop
  1017. INFO: Stopping ProtocolHandler ["http-bio-8080"]
  1018. Jun 07, 2017 11:26:10 AM org.apache.coyote.AbstractProtocol destroy
  1019. INFO: Destroying ProtocolHandler ["http-bio-8080"]
  1020. Jun 07, 2017 11:26:11 AM org.apache.catalina.startup.ClassLoaderFactory validateFile
  1021. WARNING: Problem with directory [/usr/share/tomcat7/common/classes], exists: [false], isDirectory: [false], canRead: [false]
  1022. Jun 07, 2017 11:26:11 AM org.apache.catalina.startup.ClassLoaderFactory validateFile
  1023. WARNING: Problem with directory [/usr/share/tomcat7/common], exists: [false], isDirectory: [false], canRead: [false]
  1024. Jun 07, 2017 11:26:11 AM org.apache.catalina.startup.ClassLoaderFactory validateFile
  1025. WARNING: Problem with directory [/usr/share/tomcat7/server/classes], exists: [false], isDirectory: [false], canRead: [false]
  1026. Jun 07, 2017 11:26:11 AM org.apache.catalina.startup.ClassLoaderFactory validateFile
  1027. WARNING: Problem with directory [/usr/share/tomcat7/server], exists: [false], isDirectory: [false], canRead: [false]
  1028. Jun 07, 2017 11:26:11 AM org.apache.catalina.startup.ClassLoaderFactory validateFile
  1029. WARNING: Problem with directory [/usr/share/tomcat7/shared/classes], exists: [false], isDirectory: [false], canRead: [false]
  1030. Jun 07, 2017 11:26:11 AM org.apache.catalina.startup.ClassLoaderFactory validateFile
  1031. WARNING: Problem with directory [/usr/share/tomcat7/shared], exists: [false], isDirectory: [false], canRead: [false]
  1032. Jun 07, 2017 11:26:13 AM org.apache.coyote.AbstractProtocol init
  1033. INFO: Initializing ProtocolHandler ["http-bio-8080"]
  1034. Jun 07, 2017 11:26:13 AM org.apache.catalina.startup.Catalina load
  1035. INFO: Initialization processed in 1081 ms
  1036. Jun 07, 2017 11:26:13 AM org.apache.catalina.core.StandardService startInternal
  1037. INFO: Starting service Catalina
  1038. Jun 07, 2017 11:26:13 AM org.apache.catalina.core.StandardEngine startInternal
  1039. INFO: Starting Servlet Engine: Apache Tomcat/7.0.52 (Ubuntu)
  1040. Jun 07, 2017 11:26:13 AM org.apache.catalina.startup.HostConfig deployDescriptor
  1041. INFO: Deploying configuration descriptor /etc/tomcat7/Catalina/localhost/host-manager.xml
  1042. Jun 07, 2017 11:26:13 AM org.apache.catalina.startup.HostConfig deployDescriptor
  1043. INFO: Deploying configuration descriptor /etc/tomcat7/Catalina/localhost/examples.xml
  1044. Jun 07, 2017 11:26:14 AM org.apache.catalina.startup.TaglibUriRule body
  1045. INFO: TLD skipped. URI: http://java.sun.com/jstl/core_rt is already defined
  1046. Jun 07, 2017 11:26:14 AM org.apache.catalina.startup.TaglibUriRule body
  1047. INFO: TLD skipped. URI: http://java.sun.com/jstl/core is already defined
  1048. Jun 07, 2017 11:26:14 AM org.apache.catalina.startup.TaglibUriRule body
  1049. INFO: TLD skipped. URI: http://java.sun.com/jsp/jstl/core is already defined
  1050. Jun 07, 2017 11:26:14 AM org.apache.catalina.startup.TaglibUriRule body
  1051. INFO: TLD skipped. URI: http://java.sun.com/jstl/fmt_rt is already defined
  1052. Jun 07, 2017 11:26:14 AM org.apache.catalina.startup.TaglibUriRule body
  1053. INFO: TLD skipped. URI: http://java.sun.com/jstl/fmt is already defined
  1054. Jun 07, 2017 11:26:14 AM org.apache.catalina.startup.TaglibUriRule body
  1055. INFO: TLD skipped. URI: http://java.sun.com/jsp/jstl/fmt is already defined
  1056. Jun 07, 2017 11:26:14 AM org.apache.catalina.startup.TaglibUriRule body
  1057. INFO: TLD skipped. URI: http://java.sun.com/jsp/jstl/functions is already defined
  1058. Jun 07, 2017 11:26:14 AM org.apache.catalina.startup.TaglibUriRule body
  1059. INFO: TLD skipped. URI: http://jakarta.apache.org/taglibs/standard/permittedTaglibs is already defined
  1060. Jun 07, 2017 11:26:14 AM org.apache.catalina.startup.TaglibUriRule body
  1061. INFO: TLD skipped. URI: http://jakarta.apache.org/taglibs/standard/scriptfree is already defined
  1062. Jun 07, 2017 11:26:14 AM org.apache.catalina.startup.TaglibUriRule body
  1063. INFO: TLD skipped. URI: http://java.sun.com/jstl/sql_rt is already defined
  1064. Jun 07, 2017 11:26:14 AM org.apache.catalina.startup.TaglibUriRule body
  1065. INFO: TLD skipped. URI: http://java.sun.com/jstl/sql is already defined
  1066. Jun 07, 2017 11:26:14 AM org.apache.catalina.startup.TaglibUriRule body
  1067. INFO: TLD skipped. URI: http://java.sun.com/jsp/jstl/sql is already defined
  1068. Jun 07, 2017 11:26:14 AM org.apache.catalina.startup.TaglibUriRule body
  1069. INFO: TLD skipped. URI: http://java.sun.com/jstl/xml_rt is already defined
  1070. Jun 07, 2017 11:26:14 AM org.apache.catalina.startup.TaglibUriRule body
  1071. INFO: TLD skipped. URI: http://java.sun.com/jstl/xml is already defined
  1072. Jun 07, 2017 11:26:14 AM org.apache.catalina.startup.TaglibUriRule body
  1073. INFO: TLD skipped. URI: http://java.sun.com/jsp/jstl/xml is already defined
  1074. Jun 07, 2017 11:26:14 AM org.apache.catalina.startup.HostConfig deployDescriptor
  1075. INFO: Deploying configuration descriptor /etc/tomcat7/Catalina/localhost/docs.xml
  1076. Jun 07, 2017 11:26:14 AM org.apache.catalina.startup.HostConfig deployDescriptor
  1077. INFO: Deploying configuration descriptor /etc/tomcat7/Catalina/localhost/manager.xml
  1078. Jun 07, 2017 11:26:14 AM org.apache.catalina.startup.HostConfig deployWAR
  1079. INFO: Deploying web application archive /var/lib/tomcat7/webapps/openmrs.war
  1080. Jun 07, 2017 11:26:27 AM org.apache.catalina.startup.TaglibUriRule body
  1081. INFO: TLD skipped. URI: http://www.springframework.org/tags/form is already defined
  1082. Jun 07, 2017 11:26:27 AM org.apache.catalina.startup.TaglibUriRule body
  1083. INFO: TLD skipped. URI: http://java.sun.com/jsp/jstl/functions is already defined
  1084. Jun 07, 2017 11:26:27 AM org.apache.catalina.startup.TaglibUriRule body
  1085. INFO: TLD skipped. URI: http://www.springframework.org/tags is already defined
  1086. Jun 07, 2017 11:26:27 AM org.apache.catalina.startup.TaglibUriRule body
  1087. INFO: TLD skipped. URI: http://jakarta.apache.org/taglibs/response-1.0 is already defined
  1088. Jun 07, 2017 11:26:27 AM org.apache.catalina.startup.TaglibUriRule body
  1089. INFO: TLD skipped. URI: http://java.sun.com/jstl/core_rt is already defined
  1090. Jun 07, 2017 11:26:27 AM org.apache.catalina.startup.TaglibUriRule body
  1091. INFO: TLD skipped. URI: http://jakarta.apache.org/taglibs/page-1.0 is already defined
  1092. Jun 07, 2017 11:26:27 AM org.apache.catalina.startup.TaglibUriRule body
  1093. INFO: TLD skipped. URI: http://jakarta.apache.org/taglibs/request-1.0 is already defined
  1094. Jun 07, 2017 11:26:27 AM org.apache.catalina.startup.TaglibUriRule body
  1095. INFO: TLD skipped. URI: http://jakarta.apache.org/taglibs/request-1.0 is already defined
  1096. Jun 07, 2017 11:26:27 AM org.apache.catalina.startup.TaglibUriRule body
  1097. INFO: TLD skipped. URI: http://www.springframework.org/tags is already defined
  1098. Jun 07, 2017 11:26:27 AM org.apache.catalina.startup.TaglibUriRule body
  1099. INFO: TLD skipped. URI: http://www.springframework.org/tags/form is already defined
  1100. Jun 07, 2017 11:26:27 AM org.apache.catalina.startup.TaglibUriRule body
  1101. INFO: TLD skipped. URI: http://jakarta.apache.org/taglibs/response-1.0 is already defined
  1102. Jun 07, 2017 11:26:27 AM org.apache.catalina.startup.TaglibUriRule body
  1103. INFO: TLD skipped. URI: http://java.sun.com/jstl/core_rt is already defined
  1104. Jun 07, 2017 11:26:28 AM org.apache.catalina.startup.TaglibUriRule body
  1105. INFO: TLD skipped. URI: http://java.sun.com/jsp/jstl/functions is already defined
  1106. Jun 07, 2017 11:26:28 AM org.apache.catalina.startup.TaglibUriRule body
  1107. INFO: TLD skipped. URI: http://jakarta.apache.org/taglibs/page-1.0 is already defined
  1108. WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2113) |2017-06-07 11:26:28,821| Unable to find a runtime properties file at /var/lib/tomcat7/openmrs-runtime.properties
  1109. WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2113) |2017-06-07 11:26:28,839| Unable to find a runtime properties file at /var/lib/tomcat7/openmrs-runtime.properties
  1110. INFO - Listener.contextInitialized(174) |2017-06-07 11:26:28,843| Using runtime properties file: /usr/share/tomcat7/.OpenMRS/openmrs-runtime.properties
  1111. INFO 6/7/17 11:26 AM:liquibase: Reading from `liquibasechangelog`
  1112. WARNING 6/7/17 11:26 AM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  1113. WARNING 6/7/17 11:26 AM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  1114. WARNING 6/7/17 11:26 AM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  1115. INFO 6/7/17 11:26 AM:liquibase: Reading from `liquibasechangelog`
  1116. WARNING 6/7/17 11:26 AM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  1117. WARNING 6/7/17 11:26 AM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  1118. WARNING 6/7/17 11:26 AM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  1119. WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2113) |2017-06-07 11:26:37,188| Unable to find a runtime properties file at /var/lib/tomcat7/openmrs-runtime.properties
  1120. Jun 07, 2017 11:26:37 AM org.apache.catalina.startup.HostConfig deployDirectory
  1121. INFO: Deploying web application directory /var/lib/tomcat7/webapps/ROOT
  1122. Jun 07, 2017 11:26:37 AM org.apache.coyote.AbstractProtocol start
  1123. INFO: Starting ProtocolHandler ["http-bio-8080"]
  1124. Jun 07, 2017 11:26:37 AM org.apache.catalina.startup.Catalina start
  1125. INFO: Server startup in 24686 ms
  1126. Jun 07, 2017 12:30:17 PM org.apache.coyote.AbstractProtocol pause
  1127. INFO: Pausing ProtocolHandler ["http-bio-8080"]
  1128. Jun 07, 2017 12:30:17 PM org.apache.catalina.core.StandardService stopInternal
  1129. INFO: Stopping service Catalina
  1130. ERROR - Context.getServiceContext(250) |2017-06-07 12:30:17,727| serviceContext is null. Creating new ServiceContext()
  1131. Listener.contextDestroyed: Error while shutting down openmrs:
  1132. ERROR - Listener.contextDestroyed(568) |2017-06-07 12:30:17,735| org.openmrs.api.APIException: Service not found: interface org.openmrs.messagesource.MessageSourceService
  1133. Jun 07, 2017 12:30:17 PM org.apache.catalina.loader.WebappClassLoader clearReferencesJdbc
  1134. SEVERE: The web application [/openmrs] registered the JDBC driver [com.mysql.jdbc.Driver] but failed to unregister it when the web application was stopped. To prevent a memory leak, the JDBC Driver has been forcibly unregistered.
  1135. Jun 07, 2017 12:30:17 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads
  1136. SEVERE: The web application [/openmrs] appears to have started a thread named [Thread-2] but has failed to stop it. This is very likely to create a memory leak.
  1137. Jun 07, 2017 12:30:17 PM org.apache.coyote.AbstractProtocol stop
  1138. INFO: Stopping ProtocolHandler ["http-bio-8080"]
  1139. Jun 07, 2017 12:30:17 PM org.apache.coyote.AbstractProtocol destroy
  1140. INFO: Destroying ProtocolHandler ["http-bio-8080"]
  1141. Jun 07, 2017 1:24:47 PM org.apache.catalina.startup.ClassLoaderFactory validateFile
  1142. WARNING: Problem with directory [/usr/share/tomcat7/common/classes], exists: [false], isDirectory: [false], canRead: [false]
  1143. Jun 07, 2017 1:24:47 PM org.apache.catalina.startup.ClassLoaderFactory validateFile
  1144. WARNING: Problem with directory [/usr/share/tomcat7/common], exists: [false], isDirectory: [false], canRead: [false]
  1145. Jun 07, 2017 1:24:48 PM org.apache.catalina.startup.ClassLoaderFactory validateFile
  1146. WARNING: Problem with directory [/usr/share/tomcat7/server/classes], exists: [false], isDirectory: [false], canRead: [false]
  1147. Jun 07, 2017 1:24:48 PM org.apache.catalina.startup.ClassLoaderFactory validateFile
  1148. WARNING: Problem with directory [/usr/share/tomcat7/server], exists: [false], isDirectory: [false], canRead: [false]
  1149. Jun 07, 2017 1:24:48 PM org.apache.catalina.startup.ClassLoaderFactory validateFile
  1150. WARNING: Problem with directory [/usr/share/tomcat7/shared/classes], exists: [false], isDirectory: [false], canRead: [false]
  1151. Jun 07, 2017 1:24:48 PM org.apache.catalina.startup.ClassLoaderFactory validateFile
  1152. WARNING: Problem with directory [/usr/share/tomcat7/shared], exists: [false], isDirectory: [false], canRead: [false]
  1153. Jun 07, 2017 1:24:51 PM org.apache.coyote.AbstractProtocol init
  1154. INFO: Initializing ProtocolHandler ["http-bio-8080"]
  1155. Jun 07, 2017 1:24:51 PM org.apache.catalina.startup.Catalina load
  1156. INFO: Initialization processed in 2848 ms
  1157. Jun 07, 2017 1:24:52 PM org.apache.catalina.core.StandardService startInternal
  1158. INFO: Starting service Catalina
  1159. Jun 07, 2017 1:24:52 PM org.apache.catalina.core.StandardEngine startInternal
  1160. INFO: Starting Servlet Engine: Apache Tomcat/7.0.52 (Ubuntu)
  1161. Jun 07, 2017 1:24:52 PM org.apache.catalina.startup.HostConfig deployDescriptor
  1162. INFO: Deploying configuration descriptor /etc/tomcat7/Catalina/localhost/host-manager.xml
  1163. Jun 07, 2017 1:26:40 PM org.apache.catalina.util.SessionIdGenerator createSecureRandom
  1164. INFO: Creation of SecureRandom instance for session ID generation using [SHA1PRNG] took [173] milliseconds.
  1165. Jun 07, 2017 1:26:41 PM org.apache.catalina.startup.HostConfig deployDescriptor
  1166. INFO: Deploying configuration descriptor /etc/tomcat7/Catalina/localhost/examples.xml
  1167. Jun 07, 2017 1:26:42 PM org.apache.catalina.startup.TaglibUriRule body
  1168. INFO: TLD skipped. URI: http://java.sun.com/jstl/core_rt is already defined
  1169. Jun 07, 2017 1:26:42 PM org.apache.catalina.startup.TaglibUriRule body
  1170. INFO: TLD skipped. URI: http://java.sun.com/jstl/core is already defined
  1171. Jun 07, 2017 1:26:42 PM org.apache.catalina.startup.TaglibUriRule body
  1172. INFO: TLD skipped. URI: http://java.sun.com/jsp/jstl/core is already defined
  1173. Jun 07, 2017 1:26:42 PM org.apache.catalina.startup.TaglibUriRule body
  1174. INFO: TLD skipped. URI: http://java.sun.com/jstl/fmt_rt is already defined
  1175. Jun 07, 2017 1:26:42 PM org.apache.catalina.startup.TaglibUriRule body
  1176. INFO: TLD skipped. URI: http://java.sun.com/jstl/fmt is already defined
  1177. Jun 07, 2017 1:26:42 PM org.apache.catalina.startup.TaglibUriRule body
  1178. INFO: TLD skipped. URI: http://java.sun.com/jsp/jstl/fmt is already defined
  1179. Jun 07, 2017 1:26:42 PM org.apache.catalina.startup.TaglibUriRule body
  1180. INFO: TLD skipped. URI: http://java.sun.com/jsp/jstl/functions is already defined
  1181. Jun 07, 2017 1:26:42 PM org.apache.catalina.startup.TaglibUriRule body
  1182. INFO: TLD skipped. URI: http://jakarta.apache.org/taglibs/standard/permittedTaglibs is already defined
  1183. Jun 07, 2017 1:26:42 PM org.apache.catalina.startup.TaglibUriRule body
  1184. INFO: TLD skipped. URI: http://jakarta.apache.org/taglibs/standard/scriptfree is already defined
  1185. Jun 07, 2017 1:26:42 PM org.apache.catalina.startup.TaglibUriRule body
  1186. INFO: TLD skipped. URI: http://java.sun.com/jstl/sql_rt is already defined
  1187. Jun 07, 2017 1:26:42 PM org.apache.catalina.startup.TaglibUriRule body
  1188. INFO: TLD skipped. URI: http://java.sun.com/jstl/sql is already defined
  1189. Jun 07, 2017 1:26:42 PM org.apache.catalina.startup.TaglibUriRule body
  1190. INFO: TLD skipped. URI: http://java.sun.com/jsp/jstl/sql is already defined
  1191. Jun 07, 2017 1:26:42 PM org.apache.catalina.startup.TaglibUriRule body
  1192. INFO: TLD skipped. URI: http://java.sun.com/jstl/xml_rt is already defined
  1193. Jun 07, 2017 1:26:42 PM org.apache.catalina.startup.TaglibUriRule body
  1194. INFO: TLD skipped. URI: http://java.sun.com/jstl/xml is already defined
  1195. Jun 07, 2017 1:26:42 PM org.apache.catalina.startup.TaglibUriRule body
  1196. INFO: TLD skipped. URI: http://java.sun.com/jsp/jstl/xml is already defined
  1197. Jun 07, 2017 1:26:42 PM org.apache.catalina.startup.HostConfig deployDescriptor
  1198. INFO: Deploying configuration descriptor /etc/tomcat7/Catalina/localhost/docs.xml
  1199. Jun 07, 2017 1:26:42 PM org.apache.catalina.startup.HostConfig deployDescriptor
  1200. INFO: Deploying configuration descriptor /etc/tomcat7/Catalina/localhost/manager.xml
  1201. Jun 07, 2017 1:26:42 PM org.apache.catalina.startup.HostConfig deployWAR
  1202. INFO: Deploying web application archive /var/lib/tomcat7/webapps/openmrs.war
  1203. Jun 07, 2017 1:27:24 PM org.apache.catalina.startup.TaglibUriRule body
  1204. INFO: TLD skipped. URI: http://www.springframework.org/tags/form is already defined
  1205. Jun 07, 2017 1:27:24 PM org.apache.catalina.startup.TaglibUriRule body
  1206. INFO: TLD skipped. URI: http://java.sun.com/jsp/jstl/functions is already defined
  1207. Jun 07, 2017 1:27:24 PM org.apache.catalina.startup.TaglibUriRule body
  1208. INFO: TLD skipped. URI: http://www.springframework.org/tags is already defined
  1209. Jun 07, 2017 1:27:24 PM org.apache.catalina.startup.TaglibUriRule body
  1210. INFO: TLD skipped. URI: http://jakarta.apache.org/taglibs/response-1.0 is already defined
  1211. Jun 07, 2017 1:27:24 PM org.apache.catalina.startup.TaglibUriRule body
  1212. INFO: TLD skipped. URI: http://java.sun.com/jstl/core_rt is already defined
  1213. Jun 07, 2017 1:27:24 PM org.apache.catalina.startup.TaglibUriRule body
  1214. INFO: TLD skipped. URI: http://jakarta.apache.org/taglibs/page-1.0 is already defined
  1215. Jun 07, 2017 1:27:24 PM org.apache.catalina.startup.TaglibUriRule body
  1216. INFO: TLD skipped. URI: http://jakarta.apache.org/taglibs/request-1.0 is already defined
  1217. Jun 07, 2017 1:27:24 PM org.apache.catalina.startup.TaglibUriRule body
  1218. INFO: TLD skipped. URI: http://jakarta.apache.org/taglibs/request-1.0 is already defined
  1219. Jun 07, 2017 1:27:24 PM org.apache.catalina.startup.TaglibUriRule body
  1220. INFO: TLD skipped. URI: http://www.springframework.org/tags is already defined
  1221. Jun 07, 2017 1:27:24 PM org.apache.catalina.startup.TaglibUriRule body
  1222. INFO: TLD skipped. URI: http://www.springframework.org/tags/form is already defined
  1223. Jun 07, 2017 1:27:24 PM org.apache.catalina.startup.TaglibUriRule body
  1224. INFO: TLD skipped. URI: http://jakarta.apache.org/taglibs/response-1.0 is already defined
  1225. Jun 07, 2017 1:27:24 PM org.apache.catalina.startup.TaglibUriRule body
  1226. INFO: TLD skipped. URI: http://java.sun.com/jstl/core_rt is already defined
  1227. Jun 07, 2017 1:27:24 PM org.apache.catalina.startup.TaglibUriRule body
  1228. INFO: TLD skipped. URI: http://java.sun.com/jsp/jstl/functions is already defined
  1229. Jun 07, 2017 1:27:24 PM org.apache.catalina.startup.TaglibUriRule body
  1230. INFO: TLD skipped. URI: http://jakarta.apache.org/taglibs/page-1.0 is already defined
  1231. WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2113) |2017-06-07 13:27:25,451| Unable to find a runtime properties file at /var/lib/tomcat7/openmrs-runtime.properties
  1232. WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2113) |2017-06-07 13:27:25,507| Unable to find a runtime properties file at /var/lib/tomcat7/openmrs-runtime.properties
  1233. INFO - Listener.contextInitialized(174) |2017-06-07 13:27:25,508| Using runtime properties file: /usr/share/tomcat7/.OpenMRS/openmrs-runtime.properties
  1234. INFO 6/7/17 1:27 PM:liquibase: Reading from `liquibasechangelog`
  1235. WARNING 6/7/17 1:27 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  1236. WARNING 6/7/17 1:27 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  1237. WARNING 6/7/17 1:27 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  1238. INFO 6/7/17 1:27 PM:liquibase: Reading from `liquibasechangelog`
  1239. WARNING 6/7/17 1:27 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  1240. WARNING 6/7/17 1:27 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  1241. WARNING 6/7/17 1:27 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  1242. WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2113) |2017-06-07 13:27:31,185| Unable to find a runtime properties file at /var/lib/tomcat7/openmrs-runtime.properties
  1243. Jun 07, 2017 1:27:31 PM org.apache.catalina.startup.HostConfig deployDirectory
  1244. INFO: Deploying web application directory /var/lib/tomcat7/webapps/ROOT
  1245. Jun 07, 2017 1:27:31 PM org.apache.coyote.AbstractProtocol start
  1246. INFO: Starting ProtocolHandler ["http-bio-8080"]
  1247. Jun 07, 2017 1:27:31 PM org.apache.catalina.startup.Catalina start
  1248. INFO: Server startup in 52597 ms
  1249. INFO 6/7/17 1:40 PM:liquibase: Reading from `liquibasechangelog`
  1250. WARNING 6/7/17 1:40 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  1251. WARNING 6/7/17 1:40 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  1252. WARNING 6/7/17 1:40 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  1253. INFO 6/7/17 1:40 PM:liquibase: Successfully acquired change log lock
  1254. WARNING 6/7/17 1:40 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  1255. WARNING 6/7/17 1:40 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  1256. WARNING 6/7/17 1:40 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  1257. INFO 6/7/17 1:40 PM:liquibase: Reading from `liquibasechangelog`
  1258. INFO 6/7/17 1:40 PM:liquibase: ChangeSet liquibase-update-to-latest.xml::20111218-1830-fix::sunbiz ran successfully in 9ms
  1259. INFO 6/7/17 1:40 PM:liquibase: ChangeSet liquibase-update-to-latest.xml::20120322-1510::wyclif ran successfully in 48ms
  1260. INFO 6/7/17 1:40 PM:liquibase: ChangeSet liquibase-update-to-latest.xml::20120504-1000::raff ran successfully in 6ms
  1261. INFO 6/7/17 1:40 PM:liquibase: ChangeSet liquibase-update-to-latest.xml::20120504-1010::raff ran successfully in 9ms
  1262. INFO 6/7/17 1:40 PM:liquibase: ChangeSet liquibase-update-to-latest.xml::20120504-1020::raff ran successfully in 9973ms
  1263. INFO 6/7/17 1:40 PM:liquibase: ChangeSet liquibase-update-to-latest.xml::20120504-1030::raff ran successfully in 7936ms
  1264. INFO 6/7/17 1:40 PM:liquibase: ChangeSet liquibase-update-to-latest.xml::20120504-1040::raff ran successfully in 7468ms
  1265. INFO 6/7/17 1:40 PM:liquibase: ChangeSet liquibase-update-to-latest.xml::20120504-1050::raff ran successfully in 5999ms
  1266. INFO 6/7/17 1:40 PM:liquibase: ChangeSet liquibase-update-to-latest.xml::10-insert-new-app-privileges::dkayiwa ran successfully in 10ms
  1267. INFO 6/7/17 1:40 PM:liquibase: ChangeSet liquibase-update-to-latest.xml::11-insert-new-api-privileges::dkayiwa ran successfully in 23ms
  1268. INFO 6/7/17 1:40 PM:liquibase: ChangeSet liquibase-update-to-latest.xml::1-grant-new-dashboard-overview-tab-app-privileges::dkayiwa ran successfully in 7ms
  1269. INFO 6/7/17 1:40 PM:liquibase: ChangeSet liquibase-update-to-latest.xml::2-role-assign-new-api-privileges-to-renamed-ones::dkayiwa ran successfully in 45ms
  1270. INFO 6/7/17 1:40 PM:liquibase: ChangeSet liquibase-update-to-latest.xml::1-increase-privilege-col-size-privilege::dkayiwa ran successfully in 299ms
  1271. INFO 6/7/17 1:40 PM:liquibase: ChangeSet liquibase-update-to-latest.xml::2-increase-privilege-col-size-rol-privilege::dkayiwa ran successfully in 99ms
  1272. INFO 6/7/17 1:40 PM:liquibase: ChangeSet liquibase-update-to-latest.xml::201205241728-1::mvorobey ran successfully in 22ms
  1273. INFO 6/7/17 1:40 PM:liquibase: ChangeSet liquibase-update-to-latest.xml::201205241728-2::mvorobey ran successfully in 28ms
  1274. INFO 6/7/17 1:40 PM:liquibase: Marking ChangeSet: liquibase-update-to-latest.xml::20101209-1353::wyclif::(Checksum: 3:9d30d1435a6c10a4b135609dc8e925ca) ran despite precondition failure due to onFail='MARK_RAN':
  1275. liquibase-update-to-latest.xml : Column '`as_needed`' does not exist
  1276.  
  1277. INFO 6/7/17 1:40 PM:liquibase: ChangeSet liquibase-update-to-latest.xml::20121007-test_order_laterality::djazayeri ran successfully in 2ms
  1278. INFO 6/7/17 1:40 PM:liquibase: Marking ChangeSet: liquibase-update-to-latest.xml::20121008-order_specimen_source_fk::djazayeri::(Checksum: 3:99464e51d64e056a1e23b30c7aaaf47e) ran despite precondition failure due to onFail='MARK_RAN':
  1279. liquibase-update-to-latest.xml : Not precondition failed
  1280.  
  1281. INFO 6/7/17 1:40 PM:liquibase: ChangeSet liquibase-update-to-latest.xml::20121025-TRUNK-213::lluismf ran successfully in 456ms
  1282. INFO 6/7/17 1:40 PM:liquibase: ChangeSet liquibase-update-to-latest.xml::20121021-TRUNK-333::lluismf ran successfully in 4ms
  1283. INFO 6/7/17 1:40 PM:liquibase: ChangeSet liquibase-update-to-latest.xml::20121109-TRUNK-3474::patandre ran successfully in 9ms
  1284. INFO 6/7/17 1:40 PM:liquibase: ChangeSet liquibase-update-to-latest.xml::20121112-TRUNK-3474::patandre ran successfully in 9ms
  1285. INFO 6/7/17 1:40 PM:liquibase: ChangeSet liquibase-update-to-latest.xml::20121113-TRUNK-3474::patandre ran successfully in 33ms
  1286. INFO 6/7/17 1:40 PM:liquibase: ChangeSet liquibase-update-to-latest.xml::20121113-TRUNK-3474-person-attribute-type::patandre ran successfully in 13ms
  1287. INFO 6/7/17 1:40 PM:liquibase: ChangeSet liquibase-update-to-latest.xml::20121113-TRUNK-3474-privilege::patandre ran successfully in 48ms
  1288. INFO 6/7/17 1:40 PM:liquibase: ChangeSet liquibase-update-to-latest.xml::20121114-TRUNK-3474-role::patandre ran successfully in 6ms
  1289. INFO 6/7/17 1:40 PM:liquibase: ChangeSet liquibase-update-to-latest.xml::20121114-TRUNK-3474-relationship_type::patandre ran successfully in 14ms
  1290. INFO 6/7/17 1:40 PM:liquibase: ChangeSet liquibase-update-to-latest.xml::20121114-TRUNK-3474-encounter_type::patandre ran successfully in 5ms
  1291. INFO 6/7/17 1:40 PM:liquibase: ChangeSet liquibase-update-to-latest.xml::20121212-TRUNK-2768::patandre ran successfully in 232ms
  1292. INFO 6/7/17 1:40 PM:liquibase: ChangeSet liquibase-update-to-latest.xml::20130626-TRUNK-439::jthoenes ran successfully in 3ms
  1293. INFO 6/7/17 1:40 PM:liquibase: ChangeSet liquibase-update-to-latest.xml::20131023-TRUNK-3903::k-joseph ran successfully in 18ms
  1294. INFO 6/7/17 1:40 PM:liquibase: ChangeSet liquibase-update-to-latest.xml::20130809-TRUNK-4044-duplicateEncounterRoleChangeSet::surangak ran successfully in 3ms
  1295. INFO 6/7/17 1:40 PM:liquibase: ChangeSet liquibase-update-to-latest.xml::20130809-TRUNK-4044-duplicateEncounterTypeChangeSet::surangak ran successfully in 11ms
  1296. INFO 6/7/17 1:40 PM:liquibase: ChangeSet liquibase-update-to-latest.xml::20130809-TRUNK-4044-encounter_type_unique_name_constraint::surangak ran successfully in 5418ms
  1297. INFO 6/7/17 1:41 PM:liquibase: ChangeSet liquibase-update-to-latest.xml::20130809-TRUNK-4044-encounter_role_unique_name_constraint::surangak ran successfully in 5971ms
  1298. ERROR - Context.getServiceContext(250) |2017-06-07 13:41:06,327| serviceContext is null. Creating new ServiceContext()
  1299. SEVERE 6/7/17 1:41 PM:liquibase: Change Set liquibase-update-to-latest.xml::201401101647-TRUNK-4187::wyclif failed. Error: Migration failed for change set liquibase-update-to-latest.xml::201401101647-TRUNK-4187::wyclif:
  1300. Reason:
  1301. liquibase-update-to-latest.xml : Service not found: interface org.openmrs.messagesource.MessageSourceService
  1302. :
  1303. Caused By: Precondition Error
  1304. liquibase.exception.MigrationFailedException: Migration failed for change set liquibase-update-to-latest.xml::201401101647-TRUNK-4187::wyclif:
  1305. Reason:
  1306. liquibase-update-to-latest.xml : Service not found: interface org.openmrs.messagesource.MessageSourceService
  1307. :
  1308. Caused By: Precondition Error
  1309. at liquibase.changelog.ChangeSet.execute(ChangeSet.java:285)
  1310. at liquibase.changelog.visitor.UpdateVisitor.visit(UpdateVisitor.java:27)
  1311. at org.openmrs.util.DatabaseUpdater$1OpenmrsUpdateVisitor.visit(DatabaseUpdater.java:189)
  1312. at liquibase.changelog.ChangeLogIterator.run(ChangeLogIterator.java:58)
  1313. at org.openmrs.util.DatabaseUpdater.executeChangelog(DatabaseUpdater.java:218)
  1314. at org.openmrs.util.DatabaseUpdater.executeChangelog(DatabaseUpdater.java:148)
  1315. at org.openmrs.web.filter.update.UpdateFilter$UpdateFilterCompletion$1.run(UpdateFilter.java:736)
  1316. at java.lang.Thread.run(Thread.java:745)
  1317. Caused by: liquibase.exception.PreconditionErrorException: Precondition Error
  1318. at liquibase.precondition.CustomPreconditionWrapper.check(CustomPreconditionWrapper.java:79)
  1319. at liquibase.precondition.core.AndPrecondition.check(AndPrecondition.java:34)
  1320. at liquibase.precondition.core.PreconditionContainer.check(PreconditionContainer.java:199)
  1321. at liquibase.changelog.ChangeSet.execute(ChangeSet.java:249)
  1322. ... 7 more
  1323. INFO 6/7/17 1:41 PM:liquibase: Successfully released change log lock
  1324. ERROR - UpdateFilter$UpdateFilterCompletion$1.run(753) |2017-06-07 13:41:06,342| Unable to update the database
  1325. org.openmrs.util.DatabaseUpdateException: There was an error while updating the database to the latest. file: liquibase-update-to-latest.xml. Error: Migration failed for change set liquibase-update-to-latest.xml::201401101647-TRUNK-4187::wyclif:
  1326. Reason:
  1327. liquibase-update-to-latest.xml : Service not found: interface org.openmrs.messagesource.MessageSourceService
  1328. :
  1329. Caused By: Precondition Error
  1330. at org.openmrs.util.DatabaseUpdater.executeChangelog(DatabaseUpdater.java:152)
  1331. at org.openmrs.web.filter.update.UpdateFilter$UpdateFilterCompletion$1.run(UpdateFilter.java:736)
  1332. at java.lang.Thread.run(Thread.java:745)
  1333. Caused by: liquibase.exception.MigrationFailedException: Migration failed for change set liquibase-update-to-latest.xml::201401101647-TRUNK-4187::wyclif:
  1334. Reason:
  1335. liquibase-update-to-latest.xml : Service not found: interface org.openmrs.messagesource.MessageSourceService
  1336. :
  1337. Caused By: Precondition Error
  1338. at liquibase.changelog.ChangeSet.execute(ChangeSet.java:285)
  1339. at liquibase.changelog.visitor.UpdateVisitor.visit(UpdateVisitor.java:27)
  1340. at org.openmrs.util.DatabaseUpdater$1OpenmrsUpdateVisitor.visit(DatabaseUpdater.java:189)
  1341. at liquibase.changelog.ChangeLogIterator.run(ChangeLogIterator.java:58)
  1342. at org.openmrs.util.DatabaseUpdater.executeChangelog(DatabaseUpdater.java:218)
  1343. at org.openmrs.util.DatabaseUpdater.executeChangelog(DatabaseUpdater.java:148)
  1344. ... 2 more
  1345. Caused by: liquibase.exception.PreconditionErrorException: Precondition Error
  1346. at liquibase.precondition.CustomPreconditionWrapper.check(CustomPreconditionWrapper.java:79)
  1347. at liquibase.precondition.core.AndPrecondition.check(AndPrecondition.java:34)
  1348. at liquibase.precondition.core.PreconditionContainer.check(PreconditionContainer.java:199)
  1349. at liquibase.changelog.ChangeSet.execute(ChangeSet.java:249)
  1350. ... 7 more
  1351. INFO 6/7/17 1:41 PM:liquibase: Reading from `liquibasechangelog`
  1352. WARNING 6/7/17 1:41 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  1353. WARNING 6/7/17 1:41 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  1354. WARNING 6/7/17 1:41 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
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