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misnomer001

barcinC = yamnaya_bgr + arslanLC fail

misnomer001
Aug 28th, 2022
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  1. qpAdm: parameter file: parqpa2
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. S1: southmerged1
  5. indivname: southmerged1.ind
  6. snpname: southmerged1.snp
  7. genotypename: southmerged1.geno
  8. popleft: left
  9. popright: right
  10. details: YES
  11. allsnps: YES
  12. inbreed: NO
  13. oldallsnps: NO
  14. ## qpAdm version: 1520
  15. seed: 1779346938
  16. inbreed set NO
  17. inbreed set NO
  18. tmp: /tmp/fsx.5371
  19.  
  20. left pops:
  21. Turkey_C
  22. Turkey_Arslantepe_LateC
  23. Bulgaria_EBA_Yamnaya_o
  24.  
  25. right pops:
  26. Mbuti.DG
  27. Turkey_Boncuklu_N
  28. EHG
  29. IRQ_PPN
  30. ARM_Masis_Blur_N
  31. Iran_GanjDareh_N
  32. CHG
  33. ONG.SG
  34. Tarim_EMBA1
  35. Serbia_IronGates_Mesolithic
  36. Russia_Samara_EBA_Yamnaya
  37. Armenia_EBA_KuraAraxes
  38. Turkey_N
  39. Russia_Caucasus_Eneolithic
  40.  
  41. codimension 1
  42. f4info:
  43. f4rank: 1 dof: 12 chisq: 34.003 tail: 0.000673731152 dofdiff: 14 chisqdiff: -34.003 taildiff: 1
  44. B:
  45. scale 1.000
  46. Turkey_Boncuklu_N -0.349
  47. EHG 2.011
  48. IRQ_PPN -0.459
  49. ARM_Masis_Blur_N -0.790
  50. Iran_GanjDareh_N -0.322
  51. CHG 0.336
  52. ONG.SG 0.086
  53. Tarim_EMBA1 1.784
  54. Serbia_IronGates_Mesolithic 1.675
  55. Russia_Samara_EBA_Yamnaya 1.220
  56. Armenia_EBA_KuraAraxes -0.310
  57. Turkey_N -0.442
  58. Russia_Caucasus_Eneolithic -0.084
  59. A:
  60. scale 176.053
  61. Turkey_Arslantepe_LateC -0.296
  62. Bulgaria_EBA_Yamnaya_o 1.383
  63.  
  64.  
  65. full rank
  66. f4info:
  67. f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 12 chisqdiff: 34.003 taildiff: 0.000673731152
  68. B:
  69. scale 324.368 129.517
  70. Turkey_Boncuklu_N -1.285 -1.059
  71. EHG -1.635 1.810
  72. IRQ_PPN 0.603 -0.322
  73. ARM_Masis_Blur_N -0.170 -1.125
  74. Iran_GanjDareh_N 0.307 -0.270
  75. CHG -1.405 -0.168
  76. ONG.SG 0.011 0.097
  77. Tarim_EMBA1 -1.378 1.698
  78. Serbia_IronGates_Mesolithic -1.642 1.397
  79. Russia_Samara_EBA_Yamnaya -0.995 1.116
  80. Armenia_EBA_KuraAraxes -0.229 -0.454
  81. Turkey_N -0.734 -0.896
  82. Russia_Caucasus_Eneolithic -0.198 -0.186
  83. A:
  84. scale 1.414 1.414
  85. Turkey_Arslantepe_LateC 1.414 0.000
  86. Bulgaria_EBA_Yamnaya_o 0.000 1.414
  87.  
  88.  
  89. best coefficients: 0.824 0.176
  90. totmean: 0.824 0.176
  91. boot mean: 0.823 0.177
  92. std. errors: 0.039 0.039
  93.  
  94. error covariance (* 1,000,000)
  95. 1496 -1496
  96. -1496 1496
  97.  
  98.  
  99. summ: Turkey_C 2 0.000674 0.823 0.177 1496 -1496 1496
  100.  
  101. fixed pat wt dof chisq tail prob
  102. 00 0 12 34.003 0.000673731 0.824 0.176
  103. 01 1 13 56.954 1.82928e-07 1.000 0.000
  104. 10 1 13 232.292 0 0.000 1.000
  105. best pat: 00 0.000673731 - -
  106. best pat: 01 1.82928e-07 chi(nested): 22.950 p-value for nested model: 1.66247e-06
  107.  
  108. coeffs: 0.824 0.176
  109.  
  110. ## dscore:: f_4(Base, Fit, Rbase, right2)
  111. ## genstat:: f_4(Base, Fit, right1, right2)
  112.  
  113. details: Turkey_Arslantepe_LateC Turkey_Boncuklu_N -0.003962 -3.133251
  114. details: Bulgaria_EBA_Yamnaya_o Turkey_Boncuklu_N -0.008175 -4.182379
  115. dscore: Turkey_Boncuklu_N f4: -0.004705 Z: -3.682140
  116.  
  117. details: Turkey_Arslantepe_LateC EHG -0.005039 -3.683090
  118. details: Bulgaria_EBA_Yamnaya_o EHG 0.013971 6.903078
  119. dscore: EHG f4: -0.001686 Z: -1.242761
  120.  
  121. details: Turkey_Arslantepe_LateC IRQ_PPN 0.001858 1.230420
  122. details: Bulgaria_EBA_Yamnaya_o IRQ_PPN -0.002488 -1.015803
  123. dscore: IRQ_PPN f4: 0.001091 Z: 0.708876
  124.  
  125. details: Turkey_Arslantepe_LateC ARM_Masis_Blur_N -0.000525 -0.271475
  126. details: Bulgaria_EBA_Yamnaya_o ARM_Masis_Blur_N -0.008687 -2.884215
  127. dscore: ARM_Masis_Blur_N f4: -0.001965 Z: -1.014007
  128.  
  129. details: Turkey_Arslantepe_LateC Iran_GanjDareh_N 0.000945 0.853628
  130. details: Bulgaria_EBA_Yamnaya_o Iran_GanjDareh_N -0.002088 -1.214825
  131. dscore: Iran_GanjDareh_N f4: 0.000410 Z: 0.366152
  132.  
  133. details: Turkey_Arslantepe_LateC CHG -0.004331 -3.288220
  134. details: Bulgaria_EBA_Yamnaya_o CHG -0.001297 -0.653116
  135. dscore: CHG f4: -0.003796 Z: -2.889483
  136.  
  137. details: Turkey_Arslantepe_LateC ONG.SG 0.000035 0.030000
  138. details: Bulgaria_EBA_Yamnaya_o ONG.SG 0.000753 0.405021
  139. dscore: ONG.SG f4: 0.000162 Z: 0.137076
  140.  
  141. details: Turkey_Arslantepe_LateC Tarim_EMBA1 -0.004248 -2.995563
  142. details: Bulgaria_EBA_Yamnaya_o Tarim_EMBA1 0.013110 6.112898
  143. dscore: Tarim_EMBA1 f4: -0.001187 Z: -0.836630
  144.  
  145. details: Turkey_Arslantepe_LateC Serbia_IronGates_Mesolithic -0.005063 -4.279271
  146. details: Bulgaria_EBA_Yamnaya_o Serbia_IronGates_Mesolithic 0.010786 5.941045
  147. dscore: Serbia_IronGates_Mesolithic f4: -0.002268 Z: -1.917892
  148.  
  149. details: Turkey_Arslantepe_LateC Russia_Samara_EBA_Yamnaya -0.003068 -2.854128
  150. details: Bulgaria_EBA_Yamnaya_o Russia_Samara_EBA_Yamnaya 0.008617 5.116702
  151. dscore: Russia_Samara_EBA_Yamnaya f4: -0.001007 Z: -0.940455
  152.  
  153. details: Turkey_Arslantepe_LateC Armenia_EBA_KuraAraxes -0.000705 -0.550533
  154. details: Bulgaria_EBA_Yamnaya_o Armenia_EBA_KuraAraxes -0.003504 -1.814488
  155. dscore: Armenia_EBA_KuraAraxes f4: -0.001199 Z: -0.939362
  156.  
  157. details: Turkey_Arslantepe_LateC Turkey_N -0.002264 -2.184681
  158. details: Bulgaria_EBA_Yamnaya_o Turkey_N -0.006921 -4.318287
  159. dscore: Turkey_N f4: -0.003086 Z: -2.944660
  160.  
  161. details: Turkey_Arslantepe_LateC Russia_Caucasus_Eneolithic -0.000610 -0.398899
  162. details: Bulgaria_EBA_Yamnaya_o Russia_Caucasus_Eneolithic -0.001433 -0.576456
  163. dscore: Russia_Caucasus_Eneolithic f4: -0.000755 Z: -0.487869
  164.  
  165. gendstat: Mbuti.DG Turkey_Boncuklu_N -3.682
  166. gendstat: Mbuti.DG EHG -1.243
  167. gendstat: Mbuti.DG IRQ_PPN 0.709
  168. gendstat: Mbuti.DG ARM_Masis_Blur_N -1.014
  169. gendstat: Mbuti.DG Iran_GanjDareh_N 0.366
  170. gendstat: Mbuti.DG CHG -2.889
  171. gendstat: Mbuti.DG ONG.SG 0.137
  172. gendstat: Mbuti.DG Tarim_EMBA1 -0.837
  173. gendstat: Mbuti.DG Serbia_IronGates_Mesolithic -1.918
  174. gendstat: Mbuti.DG Russia_Samara_EBA_Yamnaya -0.940
  175. gendstat: Mbuti.DG Armenia_EBA_KuraAraxes -0.939
  176. gendstat: Mbuti.DG Turkey_N -2.945
  177. gendstat: Mbuti.DG Russia_Caucasus_Eneolithic -0.488
  178. gendstat: Turkey_Boncuklu_N EHG 2.187
  179. gendstat: Turkey_Boncuklu_N IRQ_PPN 3.864
  180. gendstat: Turkey_Boncuklu_N ARM_Masis_Blur_N 1.417
  181. gendstat: Turkey_Boncuklu_N Iran_GanjDareh_N 3.851
  182. gendstat: Turkey_Boncuklu_N CHG 0.625
  183. gendstat: Turkey_Boncuklu_N ONG.SG 3.520
  184. gendstat: Turkey_Boncuklu_N Tarim_EMBA1 2.297
  185. gendstat: Turkey_Boncuklu_N Serbia_IronGates_Mesolithic 2.212
  186. gendstat: Turkey_Boncuklu_N Russia_Samara_EBA_Yamnaya 3.283
  187. gendstat: Turkey_Boncuklu_N Armenia_EBA_KuraAraxes 2.589
  188. gendstat: Turkey_Boncuklu_N Turkey_N 1.960
  189. gendstat: Turkey_Boncuklu_N Russia_Caucasus_Eneolithic 2.480
  190. gendstat: EHG IRQ_PPN 1.724
  191. gendstat: EHG ARM_Masis_Blur_N -0.141
  192. gendstat: EHG Iran_GanjDareh_N 1.574
  193. gendstat: EHG CHG -1.435
  194. gendstat: EHG ONG.SG 1.303
  195. gendstat: EHG Tarim_EMBA1 0.438
  196. gendstat: EHG Serbia_IronGates_Mesolithic -0.566
  197. gendstat: EHG Russia_Samara_EBA_Yamnaya 0.659
  198. gendstat: EHG Armenia_EBA_KuraAraxes 0.336
  199. gendstat: EHG Turkey_N -1.142
  200. gendstat: EHG Russia_Caucasus_Eneolithic 0.551
  201. gendstat: IRQ_PPN ARM_Masis_Blur_N -1.428
  202. gendstat: IRQ_PPN Iran_GanjDareh_N -0.483
  203. gendstat: IRQ_PPN CHG -3.009
  204. gendstat: IRQ_PPN ONG.SG -0.610
  205. gendstat: IRQ_PPN Tarim_EMBA1 -1.386
  206. gendstat: IRQ_PPN Serbia_IronGates_Mesolithic -2.299
  207. gendstat: IRQ_PPN Russia_Samara_EBA_Yamnaya -1.553
  208. gendstat: IRQ_PPN Armenia_EBA_KuraAraxes -1.503
  209. gendstat: IRQ_PPN Turkey_N -3.130
  210. gendstat: IRQ_PPN Russia_Caucasus_Eneolithic -1.056
  211. gendstat: ARM_Masis_Blur_N Iran_GanjDareh_N 1.242
  212. gendstat: ARM_Masis_Blur_N CHG -0.935
  213. gendstat: ARM_Masis_Blur_N ONG.SG 1.056
  214. gendstat: ARM_Masis_Blur_N Tarim_EMBA1 0.378
  215. gendstat: ARM_Masis_Blur_N Serbia_IronGates_Mesolithic -0.162
  216. gendstat: ARM_Masis_Blur_N Russia_Samara_EBA_Yamnaya 0.523
  217. gendstat: ARM_Masis_Blur_N Armenia_EBA_KuraAraxes 0.396
  218. gendstat: ARM_Masis_Blur_N Turkey_N -0.634
  219. gendstat: ARM_Masis_Blur_N Russia_Caucasus_Eneolithic 0.557
  220. gendstat: Iran_GanjDareh_N CHG -3.381
  221. gendstat: Iran_GanjDareh_N ONG.SG -0.198
  222. gendstat: Iran_GanjDareh_N Tarim_EMBA1 -1.173
  223. gendstat: Iran_GanjDareh_N Serbia_IronGates_Mesolithic -2.210
  224. gendstat: Iran_GanjDareh_N Russia_Samara_EBA_Yamnaya -1.413
  225. gendstat: Iran_GanjDareh_N Armenia_EBA_KuraAraxes -1.358
  226. gendstat: Iran_GanjDareh_N Turkey_N -3.112
  227. gendstat: Iran_GanjDareh_N Russia_Caucasus_Eneolithic -0.770
  228. gendstat: CHG ONG.SG 2.744
  229. gendstat: CHG Tarim_EMBA1 1.664
  230. gendstat: CHG Serbia_IronGates_Mesolithic 1.167
  231. gendstat: CHG Russia_Samara_EBA_Yamnaya 2.335
  232. gendstat: CHG Armenia_EBA_KuraAraxes 1.890
  233. gendstat: CHG Turkey_N 0.555
  234. gendstat: CHG Russia_Caucasus_Eneolithic 1.904
  235. gendstat: ONG.SG Tarim_EMBA1 -0.976
  236. gendstat: ONG.SG Serbia_IronGates_Mesolithic -2.007
  237. gendstat: ONG.SG Russia_Samara_EBA_Yamnaya -1.018
  238. gendstat: ONG.SG Armenia_EBA_KuraAraxes -0.989
  239. gendstat: ONG.SG Turkey_N -2.770
  240. gendstat: ONG.SG Russia_Caucasus_Eneolithic -0.569
  241. gendstat: Tarim_EMBA1 Serbia_IronGates_Mesolithic -0.865
  242. gendstat: Tarim_EMBA1 Russia_Samara_EBA_Yamnaya 0.168
  243. gendstat: Tarim_EMBA1 Armenia_EBA_KuraAraxes -0.008
  244. gendstat: Tarim_EMBA1 Turkey_N -1.394
  245. gendstat: Tarim_EMBA1 Russia_Caucasus_Eneolithic 0.246
  246. gendstat: Serbia_IronGates_Mesolithic Russia_Samara_EBA_Yamnaya 1.527
  247. gendstat: Serbia_IronGates_Mesolithic Armenia_EBA_KuraAraxes 0.842
  248. gendstat: Serbia_IronGates_Mesolithic Turkey_N -0.931
  249. gendstat: Serbia_IronGates_Mesolithic Russia_Caucasus_Eneolithic 1.008
  250. gendstat: Russia_Samara_EBA_Yamnaya Armenia_EBA_KuraAraxes -0.168
  251. gendstat: Russia_Samara_EBA_Yamnaya Turkey_N -2.326
  252. gendstat: Russia_Samara_EBA_Yamnaya Russia_Caucasus_Eneolithic 0.175
  253. gendstat: Armenia_EBA_KuraAraxes Turkey_N -1.675
  254. gendstat: Armenia_EBA_KuraAraxes Russia_Caucasus_Eneolithic 0.278
  255. gendstat: Turkey_N Russia_Caucasus_Eneolithic 1.629
  256.  
  257. removing /tmp/fsx.5371
  258. ##end of qpAdm: 2.476 seconds cpu 0.782 Mbytes in use
  259.  
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