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misnomer001

ror dali fail

misnomer001
Sep 7th, 2022
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  1. qpAdm: parameter file: parqpadm
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. popleft: left
  5. popright: right
  6. details: YES
  7. allsnps: YES
  8. inbreed: NO
  9. oldallsnps: NO
  10. S1: newpush2
  11. S1X: newpush2
  12. indivname: newpush2.ind
  13. snpname: newpush2.snp
  14. genotypename: newpush2.geno
  15. ## qpAdm version: 1520
  16. seed: 1971516139
  17. inbreed set NO
  18. inbreed set NO
  19. tmp: /tmp/fsx.8849
  20.  
  21. left pops:
  22. Ror
  23. ONG.SG
  24. IVCp_I8726
  25. Kazakhstan_MLBA_Dali
  26.  
  27. right pops:
  28. Mbuti.DG
  29. EHG
  30. CHG
  31. Russia_Shamanka_Eneolithic.SG
  32. WSHG
  33. PPN
  34. Serbia_IronGates_Mesolithic
  35. Iran_GanjDareh_N
  36. Turkey_N
  37. Tarim_EMBA1
  38.  
  39. codimension 1
  40. f4info:
  41. f4rank: 2 dof: 7 chisq: 39.955 tail: 1.28373147e-06 dofdiff: 9 chisqdiff: -39.955 taildiff: 1
  42. B:
  43. scale 1.000 1.000
  44. EHG 1.237 0.725
  45. CHG 1.003 -1.099
  46. Russia_Shamanka_Eneolithic.SG -0.500 1.377
  47. WSHG 0.976 0.305
  48. PPN 1.037 -0.502
  49. Serbia_IronGates_Mesolithic 1.218 1.022
  50. Iran_GanjDareh_N 0.833 -1.930
  51. Turkey_N 1.134 -0.140
  52. Tarim_EMBA1 0.852 0.486
  53. A:
  54. scale 66.348 206.774
  55. ONG.SG -1.536 0.578
  56. IVCp_I8726 -0.282 -1.329
  57. Kazakhstan_MLBA_Dali 0.750 0.948
  58.  
  59.  
  60. full rank
  61. f4info:
  62. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 7 chisqdiff: 39.955 taildiff: 1.28373147e-06
  63. B:
  64. scale 42.031 157.536 74.918
  65. EHG -1.110 -1.164 1.509
  66. CHG -1.136 0.235 0.453
  67. Russia_Shamanka_Eneolithic.SG 0.651 -0.846 0.218
  68. WSHG -0.882 -0.342 1.259
  69. PPN -1.082 -0.070 0.779
  70. Serbia_IronGates_Mesolithic -1.070 -1.626 1.496
  71. Iran_GanjDareh_N -1.038 1.750 0.193
  72. Turkey_N -1.136 -0.726 0.897
  73. Tarim_EMBA1 -0.768 -0.720 1.094
  74. A:
  75. scale 1.732 1.732 1.732
  76. ONG.SG 1.732 0.000 0.000
  77. IVCp_I8726 0.000 1.732 0.000
  78. Kazakhstan_MLBA_Dali 0.000 0.000 1.732
  79.  
  80.  
  81. best coefficients: 0.151 0.392 0.457
  82. totmean: 0.151 0.392 0.457
  83. boot mean: 0.151 0.392 0.457
  84. std. errors: 0.012 0.021 0.016
  85.  
  86. error covariance (* 1,000,000)
  87. 145 -156 10
  88. -156 434 -279
  89. 10 -279 268
  90.  
  91.  
  92. summ: Ror 3 0.000001 0.151 0.392 0.457 145 -156 10 434 -279 ...
  93. 268
  94.  
  95. fixed pat wt dof chisq tail prob
  96. 000 0 7 39.955 1.28373e-06 0.151 0.392 0.457
  97. 001 1 8 317.988 0 0.052 0.948 0.000
  98. 010 1 8 397.813 0 0.257 0.000 0.743
  99. 100 1 8 151.879 7.94966e-29 0.000 0.578 0.422
  100. 011 2 9 2504.697 0 1.000 0.000 0.000
  101. 101 2 9 322.240 0 0.000 1.000 0.000
  102. 110 2 9 751.468 0 0.000 0.000 1.000
  103. best pat: 000 1.28373e-06 - -
  104. best pat: 100 7.94966e-29 chi(nested): 111.924 p-value for nested model: 3.71304e-26
  105. best pat: 101 4.95938e-64 chi(nested): 170.360 p-value for nested model: 6.17289e-39
  106.  
  107. coeffs: 0.151 0.392 0.457
  108.  
  109. ## dscore:: f_4(Base, Fit, Rbase, right2)
  110. ## genstat:: f_4(Base, Fit, right1, right2)
  111.  
  112. details: ONG.SG EHG -0.026413 -23.339402
  113. details: IVCp_I8726 EHG -0.007389 -4.781420
  114. details: Kazakhstan_MLBA_Dali EHG 0.020149 18.424343
  115. dscore: EHG f4: 0.002318 Z: 2.788963
  116.  
  117. details: ONG.SG CHG -0.027037 -23.515046
  118. details: IVCp_I8726 CHG 0.001492 1.002639
  119. details: Kazakhstan_MLBA_Dali CHG 0.006053 5.619062
  120. dscore: CHG f4: -0.000739 Z: -0.892244
  121.  
  122. details: ONG.SG Russia_Shamanka_Eneolithic.SG 0.015491 15.080860
  123. details: IVCp_I8726 Russia_Shamanka_Eneolithic.SG -0.005368 -4.187048
  124. details: Kazakhstan_MLBA_Dali Russia_Shamanka_Eneolithic.SG 0.002904 2.964348
  125. dscore: Russia_Shamanka_Eneolithic.SG f4: 0.001567 Z: 2.177913
  126.  
  127. details: ONG.SG WSHG -0.020989 -17.156004
  128. details: IVCp_I8726 WSHG -0.002170 -1.363715
  129. details: Kazakhstan_MLBA_Dali WSHG 0.016801 13.684699
  130. dscore: WSHG f4: 0.003654 Z: 4.145591
  131.  
  132. details: ONG.SG PPN -0.025745 -22.807296
  133. details: IVCp_I8726 PPN -0.000445 -0.296061
  134. details: Kazakhstan_MLBA_Dali PPN 0.010394 9.559007
  135. dscore: PPN f4: 0.000682 Z: 0.816641
  136.  
  137. details: ONG.SG Serbia_IronGates_Mesolithic -0.025457 -24.541924
  138. details: IVCp_I8726 Serbia_IronGates_Mesolithic -0.010324 -7.828890
  139. details: Kazakhstan_MLBA_Dali Serbia_IronGates_Mesolithic 0.019967 20.879103
  140. dscore: Serbia_IronGates_Mesolithic f4: 0.001230 Z: 1.747915
  141.  
  142. details: ONG.SG Iran_GanjDareh_N -0.024698 -25.102331
  143. details: IVCp_I8726 Iran_GanjDareh_N 0.011109 8.641481
  144. details: Kazakhstan_MLBA_Dali Iran_GanjDareh_N 0.002577 2.805231
  145. dscore: Iran_GanjDareh_N f4: 0.001794 Z: 2.499590
  146.  
  147. details: ONG.SG Turkey_N -0.027032 -28.614770
  148. details: IVCp_I8726 Turkey_N -0.004607 -3.885568
  149. details: Kazakhstan_MLBA_Dali Turkey_N 0.011978 14.726362
  150. dscore: Turkey_N f4: -0.000420 Z: -0.667718
  151.  
  152. details: ONG.SG Tarim_EMBA1 -0.018267 -15.865071
  153. details: IVCp_I8726 Tarim_EMBA1 -0.004572 -2.941136
  154. details: Kazakhstan_MLBA_Dali Tarim_EMBA1 0.014607 12.873420
  155. dscore: Tarim_EMBA1 f4: 0.002122 Z: 2.481448
  156.  
  157. gendstat: Mbuti.DG EHG 2.789
  158. gendstat: Mbuti.DG CHG -0.892
  159. gendstat: Mbuti.DG Russia_Shamanka_Eneolithic.SG 2.178
  160. gendstat: Mbuti.DG WSHG 4.146
  161. gendstat: Mbuti.DG PPN 0.817
  162. gendstat: Mbuti.DG Serbia_IronGates_Mesolithic 1.748
  163. gendstat: Mbuti.DG Iran_GanjDareh_N 2.500
  164. gendstat: Mbuti.DG Turkey_N -0.668
  165. gendstat: Mbuti.DG Tarim_EMBA1 2.481
  166. gendstat: EHG CHG -3.442
  167. gendstat: EHG Russia_Shamanka_Eneolithic.SG -0.982
  168. gendstat: EHG WSHG 1.766
  169. gendstat: EHG PPN -1.795
  170. gendstat: EHG Serbia_IronGates_Mesolithic -1.642
  171. gendstat: EHG Iran_GanjDareh_N -0.640
  172. gendstat: EHG Turkey_N -3.779
  173. gendstat: EHG Tarim_EMBA1 -0.267
  174. gendstat: CHG Russia_Shamanka_Eneolithic.SG 2.814
  175. gendstat: CHG WSHG 4.462
  176. gendstat: CHG PPN 1.555
  177. gendstat: CHG Serbia_IronGates_Mesolithic 2.497
  178. gendstat: CHG Iran_GanjDareh_N 3.421
  179. gendstat: CHG Turkey_N 0.466
  180. gendstat: CHG Tarim_EMBA1 3.030
  181. gendstat: Russia_Shamanka_Eneolithic.SG WSHG 2.674
  182. gendstat: Russia_Shamanka_Eneolithic.SG PPN -1.009
  183. gendstat: Russia_Shamanka_Eneolithic.SG Serbia_IronGates_Mesolithic -0.487
  184. gendstat: Russia_Shamanka_Eneolithic.SG Iran_GanjDareh_N 0.308
  185. gendstat: Russia_Shamanka_Eneolithic.SG Turkey_N -2.942
  186. gendstat: Russia_Shamanka_Eneolithic.SG Tarim_EMBA1 0.740
  187. gendstat: WSHG PPN -3.037
  188. gendstat: WSHG Serbia_IronGates_Mesolithic -3.180
  189. gendstat: WSHG Iran_GanjDareh_N -2.146
  190. gendstat: WSHG Turkey_N -5.022
  191. gendstat: WSHG Tarim_EMBA1 -2.121
  192. gendstat: PPN Serbia_IronGates_Mesolithic 0.680
  193. gendstat: PPN Iran_GanjDareh_N 1.388
  194. gendstat: PPN Turkey_N -1.629
  195. gendstat: PPN Tarim_EMBA1 1.480
  196. gendstat: Serbia_IronGates_Mesolithic Iran_GanjDareh_N 0.800
  197. gendstat: Serbia_IronGates_Mesolithic Turkey_N -3.108
  198. gendstat: Serbia_IronGates_Mesolithic Tarim_EMBA1 1.138
  199. gendstat: Iran_GanjDareh_N Turkey_N -3.652
  200. gendstat: Iran_GanjDareh_N Tarim_EMBA1 0.392
  201. gendstat: Turkey_N Tarim_EMBA1 3.144
  202.  
  203. removing /tmp/fsx.8849
  204. ##end of qpAdm: 6.515 seconds cpu 0.385 Mbytes in use
  205.  
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