h5ad2seurat2

#conda activate seuratdisk
library(Seurat)
library(SeuratDisk)

for (sample_n in c("SRR12082758", "SRR12082760", "SRR14407605")){
  Convert(paste0('/home/dell/Desktop/Public/SeqShare/GSE153164/RAWdata/', sample_n, '/out.gzip.h5ad'), "h5seurat", overwrite=F)
}

for (sample_n in c("SRR13078488", "SRR13078490", "SRR13078492", "SRR13078494", "SRR13078495", "SRR13078497", "SRR13078498")){
  Convert(paste0('/home/dell/DataRelay/Public/SeqShare/PMID33649223/', sample_n, '/out.gzip.h5ad'), "h5seurat", overwrite=F)
}

seuratObject <- LoadH5Seurat(paste0('/home/dell/Desktop/Public/SeqShare/GSE153164/RAWdata/', sample_n, '/out.gzip.h5seurat'))
Convert(paste0('~/Desktop/Public/SeqShare/shilab_E12E14_cortex/zyy_merge/E14 test/out.gzip.h5ad'), "h5seurat", overwrite=F)

seuratObject <- LoadH5Seurat("/home/dell/Desktop/Public/SeqShare/shilab_E12E14_cortex/E16_fastq/out_h5/out.gzip.h5ad")
Convert(paste0('/home/dell/Desktop/Public/SeqShare/shilab_E12E14_cortex/E16_fastq/out_h5/out.gzip.h5ad'), "h5seurat", overwrite=F)